AT2G28725

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12328605 .. 12328943
339 bp
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UTR
Exon/CDS
Intron
AT2G28725.1

Sequence Viewer

Length: 339 bp
ATGGAACCAATTCTTGAAAAAACCTCAACACGTTGGGAAGTTCTTGTTCAAACAGCAACATGGACAATTCTCCTAATGATCACAGTGGCTTTGGCTTCATTTGCTCCGGAGATGGCGTTTGTGTCGAAATTAAAGTCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTACCGGGAGAAATGTTAATCTTGCCGTCAGAAATGGTGAAGAATTCATATTTAGACGTTTTTTTACCAACGATATTCGCAGGAGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTTTTGGTATTGAAGGTGTTGTAGAAGAAATCGAAGAACAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.39

Weight (kDa)

4.38

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AcsI RAATTY 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 17, 50, 305
Aor13HI TCCGGA 1 cut(s) 106
ApoI RAATTY 1 cut(s) 214
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 220
BccI CCATC 3 cut(s) 106, 140, 160
BceAI ACGGC 1 cut(s) 181
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 246, 276
Bse3DI GCAATG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 106
BseMI GCAATG 1 cut(s) 264
BsiSI CCGG 2 cut(s) 107, 176
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 78, 287
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 264
BssMI GATC 2 cut(s) 78, 287
Bst4CI ACNGT 1 cut(s) 85
BstKTI GATC 2 cut(s) 81, 290
BstMBI GATC 2 cut(s) 78, 287
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 90
CviAII CATG 2 cut(s) 60, 291
CviJI RGCY 2 cut(s) 89, 95
CviKI_1 RGCY 2 cut(s) 89, 95
DpnI GATC 2 cut(s) 80, 289
DpnII GATC 2 cut(s) 78, 287
EcoRI GAATTC 1 cut(s) 214
FaeI CATG 2 cut(s) 63, 294
FaiI YATR 4 cut(s) 61, 220, 260, 292
FatI CATG 2 cut(s) 59, 290
FbaI TGATCA 1 cut(s) 78
HapII CCGG 2 cut(s) 107, 176
Hin1II CATG 2 cut(s) 63, 294
HinfI GANTC 1 cut(s) 160
HpaII CCGG 2 cut(s) 107, 176
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 145, 165, 202
Hpy188III TCNNGA 2 cut(s) 14, 107
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 31, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpySE526I ACGT 2 cut(s) 31, 228
Hsp92II CATG 2 cut(s) 63, 294
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 287
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 120, 189, 237
MaeII ACGT 2 cut(s) 31, 228
MalI GATC 2 cut(s) 80, 289
MboI GATC 2 cut(s) 78, 287
MboII GAAGA 4 cut(s) 132, 223, 329, 338
MluCI AATT 4 cut(s) 9, 66, 128, 214
MnlI CCTC 1 cut(s) 34
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 2 cut(s) 131, 188
MspI CCGG 2 cut(s) 107, 176
MspR9I CCNGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 177
NdeII GATC 2 cut(s) 78, 287
NlaIII CATG 2 cut(s) 63, 294
NlaIV GGNNCC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 131, 188
Sau3AI GATC 2 cut(s) 78, 287
ScrFI CCNGG 1 cut(s) 177
SetI ASST 4 cut(s) 26, 34, 231, 310
Sse9I AATT 4 cut(s) 9, 66, 128, 214
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 34, 231
TaqI TCGA 2 cut(s) 125, 324
TasI AATT 4 cut(s) 9, 66, 128, 214
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 2 cut(s) 131, 188
Tru9I TTAA 2 cut(s) 131, 188
TscAI CASTG 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 87, 207
TspRI CASTG 1 cut(s) 90
XapI RAATTY 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.