Rmu_sc0035398.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035398.1
OG0015900
Physical Location & Seq
Forward (+)
1 .. 263
263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035398.1_g000001.1.cds

Sequence Viewer

Length: 263 bp
tggccgtggcggccttctctcccgagatggcttttgtcacggccatatctccgtcatcggcattctccaagtcctgcgcggtggaggggtttgttaggataccgttagagtacccgagagaggcaatgtgttttccggctcacatggtccggcggtccggcttggatttcttcgtccccacggtgtttgccgctctggtcgtggcgggttctgcgttggtcgtcagatcgttggccttggggttgggtggtggaggtgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

8.82

Weight (kDa)

8.1

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 79
AciI CCGC 5 cut(s) 10, 79, 153, 191, 205
AcoI YGGCCR 2 cut(s) 2, 41
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 120
Ama87I CYCGRG 2 cut(s) 22, 114
AoxI GGCC 4 cut(s) 2, 11, 41, 233
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 147, 155
AvaI CYCGRG 2 cut(s) 22, 114
AvaII GGWCC 2 cut(s) 147, 155
BccI CCATC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 56
BciVI GTATCC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 11, 191
BlsI GCNGC 2 cut(s) 12, 192
Bme18I GGWCC 2 cut(s) 147, 155
BmeT110I CYCGRG 2 cut(s) 22, 114
BmgT120I GGNCC 2 cut(s) 147, 155
BsaJI CCNNGG 3 cut(s) 5, 179, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 5, 179, 236
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 4, 13, 43, 235
BsiHKCI CYCGRG 2 cut(s) 22, 114
BsiSI CCGG 3 cut(s) 136, 150, 158
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 4 cut(s) 4, 13, 43, 235
BsoBI CYCGRG 2 cut(s) 22, 114
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 5 cut(s) 10, 79, 153, 191, 205
BspANI GGCC 4 cut(s) 4, 13, 43, 235
BspFNI CGCG 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 5, 179, 236
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 104, 183
BstDSI CCRYGG 2 cut(s) 5, 179
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 10, 211
BstUI CGCG 1 cut(s) 79
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 4 cut(s) 4, 13, 43, 235
BtgI CCRYGG 2 cut(s) 5, 179
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 147, 155
CpoI CGGWCCG 1 cut(s) 155
Csp6I GTAC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CspI CGGWCCG 1 cut(s) 155
CviAII CATG 1 cut(s) 144
CviJI RGCY 7 cut(s) 4, 13, 31, 43, 139, 161, 235
CviKI_1 RGCY 7 cut(s) 4, 13, 31, 43, 139, 161, 235
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 2 cut(s) 2, 41
Eco130I CCWWGG 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 147, 155
Eco88I CYCGRG 2 cut(s) 22, 114
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 147
FaiI YATR 2 cut(s) 46, 145
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 143
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 11, 191
Fsp4HI GCNGC 2 cut(s) 11, 191
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 11, 191
HaeIII GGCC 4 cut(s) 4, 13, 43, 235
HapII CCGG 3 cut(s) 136, 150, 158
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 147
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HpaII CCGG 3 cut(s) 136, 150, 158
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 2 cut(s) 104, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 211
Hsp92II CATG 1 cut(s) 147
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 87, 149, 163, 171, 181
MaeIII GTNAC 1 cut(s) 36
MalI GATC 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 193
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 162
MnlI CCTC 3 cut(s) 78, 114, 247
MspI CCGG 3 cut(s) 136, 150, 158
Mva1269I GAATGC 1 cut(s) 61
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 10, 211
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 36
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 12, 192
PspPI GGNCC 2 cut(s) 147, 155
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
Rsr2I CGGWCCG 1 cut(s) 155
RsrII CGGWCCG 1 cut(s) 155
SatI GCNGC 2 cut(s) 11, 191
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 147, 155
SetI ASST 1 cut(s) 258
SfiI GGCCNNNNNGGCC 1 cut(s) 10
SinI GGWCC 2 cut(s) 147, 155
SsiI CCGC 5 cut(s) 10, 79, 153, 191, 205
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 2 cut(s) 104, 183
TauI GCSGC 2 cut(s) 13, 193
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 147, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.