Prupe.6G081800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015900
Physical Location & Seq
Reverse (-)
5534797 .. 5535448
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G081800.1

Sequence Viewer

Length: 402 bp
ATGTCTCTCCCGTTCTTCCACTCACTTCTCCGAGCCCTCACGTCCAGGTGGCCGGTTTTTCTCTATGCGGCCACCTGGACTCTTTTTCTGACGGTGACAGTGGCCGTGGCTTCTTTCTCTCCTGAGATTGCATTCGTCACGGCCATATCTCCCTCCTCGCCCTTCTCCAAGTCTTGTGCTGGAGAGGGGTTTGTTAGAATACCCTTGGATTATCCAAGAGAGGCAATGTGCTTCCCGACTAACATGGTTCGGAGGTCCAACTTGGATTTCTTTGTGCCTACGGTGTTTGCTGCTTTGATTGTGGCGGGTTCGGCTTTTGTGGTGCGGTCCTTGGCCTTGTGGGAGGGGACAGAGAGACGCAGAGAGGTTGATGATGGCTTGATGTTGTTCTCTAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.86

Weight (kDa)

8.84

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 68, 305, 325
AcoI YGGCCR 4 cut(s) 50, 69, 102, 141
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 2 cut(s) 44, 74
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
Alw26I GTCTC 2 cut(s) 9, 349
AoxI GGCC 5 cut(s) 50, 69, 102, 141, 333
ApeKI GCWGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 255, 327
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 255, 327
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 368
BceAI ACGGC 2 cut(s) 89, 156
BciT130I CCWGG 2 cut(s) 46, 76
BcoDI GTCTC 2 cut(s) 9, 349
BfaI CTAG 1 cut(s) 393
BisI GCNGC 2 cut(s) 69, 291
BlsI GCNGC 2 cut(s) 70, 292
Bme1390I CCNGG 2 cut(s) 46, 76
Bme18I GGWCC 2 cut(s) 255, 327
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 255, 327
BmrFI CCNGG 2 cut(s) 46, 76
BpmI CTGGAG 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 105, 204, 330
Bse118I RCCGGY 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 46, 76
BseDI CCNNGG 3 cut(s) 105, 204, 330
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 5 cut(s) 52, 71, 104, 143, 335
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 9, 349
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 5 cut(s) 52, 71, 104, 143, 335
Bsp1286I GDGCHC 1 cut(s) 37
BspACI CCGC 3 cut(s) 68, 305, 325
BspANI GGCC 5 cut(s) 52, 71, 104, 143, 335
BspCNI CTCAG 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 105, 204, 330
BssT1I CCWWGG 2 cut(s) 204, 330
Bst2UI CCWGG 2 cut(s) 46, 76
Bst4CI ACNGT 3 cut(s) 94, 100, 283
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 9, 349
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 46, 76
BstSCI CCNGG 2 cut(s) 44, 74
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 5 cut(s) 52, 71, 104, 143, 335
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 255, 327
CseI GACGC 1 cut(s) 366
CviAII CATG 1 cut(s) 244
CviJI RGCY 9 cut(s) 35, 52, 71, 104, 110, 143, 314, 335, 378
CviKI_1 RGCY 9 cut(s) 35, 52, 71, 104, 110, 143, 314, 335, 378
DdeI CTNAG 1 cut(s) 123
EaeI YGGCCR 4 cut(s) 50, 69, 102, 141
Eco130I CCWWGG 2 cut(s) 204, 330
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 255, 327
EcoRII CCWGG 2 cut(s) 44, 74
EcoT14I CCWWGG 2 cut(s) 204, 330
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 204, 330
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 66, 146, 245
FaqI GGGAC 1 cut(s) 361
FatI CATG 1 cut(s) 243
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 69, 291
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 69, 291
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 69, 291
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 5 cut(s) 52, 71, 104, 143, 335
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 247
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 32, 90, 252
Hpy188III TCNNGA 3 cut(s) 122, 235, 393
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 3 cut(s) 94, 100, 283
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 247
LpnPI CCDG 7 cut(s) 31, 58, 61, 66, 88, 135, 165
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 94, 136
MboII GAAGA 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 37
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 8 cut(s) 47, 163, 166, 178, 214, 246, 337, 358
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 46, 76
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 2 cut(s) 46, 76
MwoI GCNNNNNNNGC 1 cut(s) 311
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 94, 136
PctI GAATGC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 70, 292
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 44, 74
PspGI CCWGG 2 cut(s) 44, 74
PspPI GGNCC 2 cut(s) 255, 327
SatI GCNGC 2 cut(s) 69, 291
Sau96I GGNCC 2 cut(s) 255, 327
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 46, 76
SduI GDGCHC 1 cut(s) 37
SetI ASST 5 cut(s) 44, 50, 77, 257, 369
SinI GGWCC 2 cut(s) 255, 327
SsiI CCGC 3 cut(s) 68, 305, 325
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 44, 74
StyI CCWWGG 2 cut(s) 204, 330
TaaI ACNGT 3 cut(s) 94, 100, 283
TaiI ACGT 1 cut(s) 44
TauI GCSGC 1 cut(s) 71
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 2 cut(s) 94, 136
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 2 cut(s) 94, 136
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 255, 327
XbaI TCTAGA 1 cut(s) 392
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.