AT1G07840

Sas10/Utp3/C1D family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008750
Physical Location & Seq
Forward (+)
2424045 .. 2426728
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07840.3

Sequence Viewer

Length: 939 bp
ATGGAGGAGATCACCAAACCGGTCCTTGTTGGAATAGTTAAGAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGAAATGAAGAATGTTCTAGATGTGGTTAGGAGCAAAGTGGAAGCTCTGACTGCATTGGTAAAAGCAAACAGTTTTCCGACAGCGGGTGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTTCTAAGTTATTGCCAGGATCTTGTATATTATATTCTAAGGAAAGCAAAAGGACTCTCTATTGATGGTCATCCTCTTGTAAGGAGCCTTGTAGAGATACGTATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTACCAGATTCAGAAGCTCACCACAGCCGGTGGGCCTGTGACAGAGCTAGCTCATTCCGAGGGAAAGGGGTCGTGTGAAGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCTGACTTACTTGCTGACAAAGAGGATGACCAAGAGGATGATGGTGTTTATCGACCCCCGAAATTTGCCCCTATGTCTATGGAAGATAAGACTTCAAAACAAGAAAGAGATGCTGCCAGAAAAGAGAAACACTTTTTTAGACAAGCCACTGAAAATACATACATGAAAGATGTGTTGGACGATCTGGAGGACAGGCCTGAAGAGATTAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAAGAGGTTTATGGCACAGTATGAAAGGCAACAAAAGGCAGAAGAAGAGCTCTTTACCCGGGCACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCATGAACTAACCGAGAACTTTTACGATGATATCAAGTTCTTGGATAAGGATGGTGAAAAGCCAAGAAGCTTCGGCCGTAATAAAAGGGGAGGGCCATTCAAGAAAAGAAAGACAAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

312

Amino Acids

36.08

Weight (kDa)

8.95

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 24 - 104 1.2e-16 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 757
AciI CCGC 2 cut(s) 158, 810
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 3 cut(s) 320, 450, 675
AfaI GTAC 1 cut(s) 341
AfeI AGCGCT 1 cut(s) 794
AfiI CCNNNNNNNGG 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 4 cut(s) 441, 552, 799, 916
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 8 cut(s) 50, 58, 119, 355, 385, 389, 745, 885
AluI AGCT 8 cut(s) 50, 58, 119, 355, 385, 389, 745, 885
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 753
Aor51HI AGCGCT 1 cut(s) 794
AoxI GGCC 5 cut(s) 180, 371, 650, 889, 908
ApeKI GCWGC 2 cut(s) 569, 807
ApoI RAATTY 1 cut(s) 518
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 3 cut(s) 22, 371, 908
AsuC2I CCSGG 2 cut(s) 754, 755
AsuHPI GGTGA 3 cut(s) 4, 349, 881
AsuNHI GCTAGC 2 cut(s) 58, 385
AvaI CYCGRG 1 cut(s) 753
AvaII GGWCC 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 760
BaeI ACNNNNGTAYC 4 cut(s) 284, 317, 323, 356
BanI GGYRCC 1 cut(s) 757
BanII GRGCYC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 556, 819
BccI CCATC 3 cut(s) 254, 491, 860
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 2 cut(s) 754, 755
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 3 cut(s) 59, 92, 386
BfoI RGCGCY 1 cut(s) 796
BglII AGATCT 1 cut(s) 433
BisI GCNGC 2 cut(s) 570, 808
BlsI GCNGC 2 cut(s) 571, 809
Bme1390I CCNGG 3 cut(s) 212, 754, 755
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 753
BmgT120I GGNCC 3 cut(s) 22, 371, 908
BmiI GGNNCC 2 cut(s) 281, 759
BmrFI CCNGG 3 cut(s) 212, 754, 755
BmsI GCATC 3 cut(s) 71, 196, 556
BmtI GCTAGC 2 cut(s) 62, 389
BpmI CTGGAG 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 754, 755
BsaAI YACGTR 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 396, 753
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse118I RCCGGY 2 cut(s) 19, 365
Bse3DI GCAATG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 396, 753
BseGI GGATG 5 cut(s) 62, 265, 487, 499, 871
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 760
BseX3I CGGCCG 1 cut(s) 889
BseXI GCAGC 2 cut(s) 556, 819
Bsh1285I CGRYCG 1 cut(s) 892
BshFI GGCC 5 cut(s) 182, 373, 652, 891, 910
BshNI GGYRCC 1 cut(s) 757
BshTI ACCGGT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 892
BsiHKAI GWGCWC 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 3 cut(s) 20, 366, 754
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 5 cut(s) 182, 373, 652, 891, 910
BsoBI CYCGRG 1 cut(s) 753
Bsp1286I GDGCHC 2 cut(s) 747, 760
Bsp143I GATC 4 cut(s) 9, 214, 433, 637
BspACI CCGC 2 cut(s) 158, 810
BspANI GGCC 5 cut(s) 182, 373, 652, 891, 910
BspLI GGNNCC 2 cut(s) 281, 759
BspOI GCTAGC 2 cut(s) 62, 389
BspPI GGATC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 735
BspT107I GGYRCC 1 cut(s) 757
BsrDI GCAATG 1 cut(s) 694
BsrFI RCCGGY 2 cut(s) 19, 365
BssAI RCCGGY 2 cut(s) 19, 365
BssECI CCNNGG 2 cut(s) 396, 753
BssMI GATC 4 cut(s) 9, 214, 433, 637
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 146, 714
Bst6I CTCTTC 4 cut(s) 651, 692, 735, 776
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 60, 387
BstDEI CTNAG 2 cut(s) 200, 233
BstF5I GGATG 5 cut(s) 62, 265, 487, 499, 871
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 4 cut(s) 12, 217, 436, 640
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 4 cut(s) 9, 214, 433, 637
BstMCI CGRYCG 1 cut(s) 892
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 210, 752, 753
BstSLI GKGCMC 1 cut(s) 760
BstSNI TACGTA 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 556, 819
BstX2I RGATCY 2 cut(s) 214, 433
BstYI RGATCY 2 cut(s) 214, 433
BstZI CGGCCG 1 cut(s) 889
BsuRI GGCC 5 cut(s) 182, 373, 652, 891, 910
BtsCI GGATG 5 cut(s) 62, 265, 487, 499, 871
BtsIMutI CAGTG 2 cut(s) 603, 934
Cac8I GCNNGC 2 cut(s) 60, 387
CfoI GCGC 1 cut(s) 795
Cfr10I RCCGGY 2 cut(s) 19, 365
Cfr13I GGNCC 3 cut(s) 22, 371, 908
Cfr9I CCCGGG 1 cut(s) 753
Csp6I GTAC 1 cut(s) 340
CspAI ACCGGT 1 cut(s) 19
CviAII CATG 2 cut(s) 619, 818
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 200, 233
DpnI GATC 4 cut(s) 11, 216, 435, 639
DpnII GATC 4 cut(s) 9, 214, 433, 637
EaeI YGGCCR 1 cut(s) 889
EagI CGGCCG 1 cut(s) 889
Eam1104I CTCTTC 4 cut(s) 651, 692, 735, 776
EarI CTCTTC 4 cut(s) 651, 692, 735, 776
Ecl136II GAGCTC 1 cut(s) 745
EclXI CGGCCG 1 cut(s) 889
Eco105I TACGTA 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 747
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 794
Eco52I CGGCCG 1 cut(s) 889
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 3 cut(s) 320, 450, 675
Eco88I CYCGRG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 745
EcoRII CCWGG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 847
EcoT38I GRGCYC 1 cut(s) 747
FaeI CATG 2 cut(s) 622, 821
FaqI GGGAC 1 cut(s) 303
FatI CATG 2 cut(s) 618, 817
FauI CCCGC 2 cut(s) 151, 803
Fnu4HI GCNGC 2 cut(s) 570, 808
FokI GGATG 5 cut(s) 49, 252, 494, 506, 878
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 570, 808
FspBI CTAG 3 cut(s) 59, 92, 386
GlaI GCGC 1 cut(s) 794
GluI GCNGC 2 cut(s) 570, 808
GsuI CTGGAG 1 cut(s) 662
HaeII RGCGCY 1 cut(s) 796
HaeIII GGCC 5 cut(s) 182, 373, 652, 891, 910
HapII CCGG 3 cut(s) 20, 366, 754
HhaI GCGC 1 cut(s) 795
Hin1II CATG 2 cut(s) 622, 821
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 3 cut(s) 249, 313, 346
HpaII CCGG 3 cut(s) 20, 366, 754
HphI GGTGA 3 cut(s) 4, 349, 881
Hpy188I TCNGA 5 cut(s) 123, 153, 351, 397, 430
Hpy188III TCNNGA 5 cut(s) 92, 176, 305, 641, 916
HpyCH4III ACNGT 2 cut(s) 146, 714
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 128, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 200, 233
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 622, 821
HspAI GCGC 1 cut(s) 793
Kzo9I GATC 4 cut(s) 9, 214, 433, 637
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 3 cut(s) 55, 105, 279
Lsp1109I GCAGC 2 cut(s) 556, 819
LweI GCATC 3 cut(s) 71, 196, 556
MaeI CTAG 3 cut(s) 59, 92, 386
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 192, 376
MalI GATC 4 cut(s) 11, 216, 435, 639
MboI GATC 4 cut(s) 9, 214, 433, 637
MboII GAAGA 8 cut(s) 94, 443, 551, 668, 709, 749, 752, 793
MflI RGATCY 2 cut(s) 214, 433
MhlI GDGCHC 2 cut(s) 747, 760
MluCI AATT 2 cut(s) 442, 518
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 3 cut(s) 10, 176, 612
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 1 cut(s) 39
MspA1I CMGCKG 2 cut(s) 158, 810
MspI CCGG 3 cut(s) 20, 366, 754
MspR9I CCNGG 3 cut(s) 212, 754, 755
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 2 cut(s) 754, 755
NdeII GATC 4 cut(s) 9, 214, 433, 637
NheI GCTAGC 2 cut(s) 58, 385
NlaIII CATG 2 cut(s) 622, 821
NlaIV GGNNCC 2 cut(s) 281, 759
NmuCI GTSAC 1 cut(s) 376
PceI AGGCCT 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 313, 346
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 2 cut(s) 571, 809
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 296
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 281, 759
PspPI GGNCC 3 cut(s) 22, 371, 908
PsuI RGATCY 2 cut(s) 214, 433
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SacI GAGCTC 1 cut(s) 747
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 570, 808
Sau3AI GATC 4 cut(s) 9, 214, 433, 637
Sau96I GGNCC 3 cut(s) 22, 371, 908
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 3 cut(s) 212, 754, 755
SduI GDGCHC 2 cut(s) 747, 760
SfaNI GCATC 3 cut(s) 71, 196, 556
SinI GGWCC 1 cut(s) 22
SmaI CCCGGG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SnaBI TACGTA 1 cut(s) 296
Sse9I AATT 2 cut(s) 442, 518
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 2 cut(s) 158, 810
SspMI CTAG 3 cut(s) 59, 92, 386
SstI GAGCTC 1 cut(s) 747
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 3 cut(s) 210, 752, 753
TaaI ACNGT 2 cut(s) 146, 714
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 508
TasI AATT 2 cut(s) 442, 518
TfiI GAWTC 2 cut(s) 313, 346
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 569, 807
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 95, 635, 732, 834
TspGWI ACGGA 1 cut(s) 55
TspMI CCCGGG 1 cut(s) 753
TspRI CASTG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmaI CCCGGG 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 3 cut(s) 59, 92, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.