MD15G1388800.v1.1

Sas10/Utp3/C1D family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008750
Physical Location & Seq
Reverse (-)
48141308 .. 48142617
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1388800.v1.1.491

Sequence Viewer

Length: 702 bp
ATGATTTGCATCAAAAGGCACATGTTTCATTTGTTTTCTTCTCCATGTCAAATGTATAAGGTGAAAGCAAATAATTATCCAACAGTAGACGGGATAAGCTATCTTGAAGCCAAGCATTTGCTGCTTCTAAACTATTACCAGTCACTTGTCTATTACTTACTTCGTAAGGCTAAAGGGTTTTCAATAAATGGGCATCTTGTTGTTCGTAGCCTTGTGGAGATAAGGTTGTTTCTGGAAAAGCTCCAATACCAAGTTGAGAAGCTTACGAAGGCTACTTCAAGCACAATTGAAGATGTAAGGCCACGTGGAAATGAACCACAATCCAGTGTGCCTTGGCAAACAGATGATTTGTTGAGATACCGCCCTAACCCTGAAATGCTTGTTAGCAAAACAGATGTGAATTCTAAGGTGAAATATTGTATAGAACTAGCCCGATATAGGGCAAAGAGGGATGAACGTGAACGACAAGAAGAGGTACTTTTTACGCGTGCTCCTATTACAAAGAAGGAGAAACAGAGAGAGAAACACTTAAAGAAGTCAAGAAATGGATTACTTGGTTTGACGGACAATTTCTATGTTGAAATCAAGGGTTTACCTTTGGACGATGAGAATGATGAGCAGGTAGCAAGCTTCAGTAGTGCTAGGGGTGGAATGGGGAGGCATAAGAAGCACAAGGTATATCATGTAAAGTATAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

234

Amino Acids

27.36

Weight (kDa)

9.64

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 27 - 80 1.6e-12 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 487
AciI CCGC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 616
AcvI CACGTG 1 cut(s) 305
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 438, 439
AflIII ACRYGT 2 cut(s) 21, 485
AgsI TTSAA 5 cut(s) 107, 183, 279, 290, 581
AluBI AGCT 4 cut(s) 99, 241, 262, 630
AluI AGCT 4 cut(s) 99, 241, 262, 630
Alw21I GWGCWC 1 cut(s) 493
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 73, 421
BbrPI CACGTG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 108
BfaI CTAG 2 cut(s) 428, 642
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BmsI GCATC 2 cut(s) 18, 202
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 332
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 475, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 439
Bse1I ACTGG 2 cut(s) 139, 324
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 457
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 438, 439
BseNI ACTGG 2 cut(s) 139, 324
BseXI GCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 438, 439
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 493
BspACI CCGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 301
BspFNI CGCG 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 610
BsrI ACTGG 2 cut(s) 139, 324
BssECI CCNNGG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 465
BstAPI GCANNNNNTGC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 489, 628
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 2 cut(s) 121, 667
BstNSI RCATGY 1 cut(s) 25
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 489, 628
Csp6I GTAC 1 cut(s) 476
CviAII CATG 3 cut(s) 22, 45, 683
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 616
Eco72I CACGTG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 3 cut(s) 25, 48, 686
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FatI CATG 3 cut(s) 21, 44, 682
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 2 cut(s) 428, 642
GluI GCNGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 3 cut(s) 25, 48, 686
HindIII AAGCTT 2 cut(s) 260, 628
HphI GGTGA 2 cut(s) 73, 421
Hpy166II GTNNAC 3 cut(s) 88, 461, 593
Hpy188III TCNNGA 3 cut(s) 104, 233, 540
Hpy8I GTNNAC 3 cut(s) 88, 461, 593
HpyAV CCTTC 2 cut(s) 262, 499
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 304, 457
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 667
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 304, 457
Hsp92II CATG 3 cut(s) 25, 48, 686
LmnI GCTCC 2 cut(s) 246, 496
LpnPI CCDG 5 cut(s) 152, 218, 337, 384, 605
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 2 cut(s) 18, 202
MaeI CTAG 2 cut(s) 428, 642
MaeII ACGT 2 cut(s) 304, 457
MaeIII GTNAC 1 cut(s) 141
MboII GAAGA 3 cut(s) 30, 302, 482
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 4 cut(s) 73, 285, 400, 568
MluI ACGCGT 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 3 cut(s) 441, 466, 651
MseI TTAA 1 cut(s) 530
MunI CAATTG 1 cut(s) 285
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 2 cut(s) 121, 667
NlaIII CATG 3 cut(s) 25, 48, 686
NmuCI GTSAC 1 cut(s) 141
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PkrI GCNGC 1 cut(s) 123
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 305
PscI ACATGT 1 cut(s) 21
PspCI CACGTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 2 cut(s) 18, 202
Sse9I AATT 4 cut(s) 73, 285, 400, 568
SsiI CCGC 1 cut(s) 361
SspI AATATT 1 cut(s) 416
SspMI CTAG 2 cut(s) 428, 642
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 307, 460
TasI AATT 4 cut(s) 73, 285, 400, 568
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 17, 327, 468
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 1 cut(s) 331
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 428, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.