Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008750

Physical Location & Seq

Genomic Coordinates Forward (+)

17705686 .. 17708494

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAAGACGCTTCAAATTCAAACCCAATCTCTGAAAATAGAGTAAAGCAAGAAGCTCCCCAGCTTGCTGCTTTGTTGAGAGAAATGAAGGAAGGATTAGATACAGTGAGGGCAAAAGTCCAAGCTTTAACTGCAAAGGTGAAAGCAAATAATTATCCGACAGCAGACGGGATAAGCTATCTTGAAGCCAAGCATTTGCTGCTTCTAAACTATTGCCAGTCACTTGTCTATTACTTACTTCGTAAGGCTAAAGGGTTTTCAATAAATGGGCACCCCGTTGTTCGTAGCCTTGTGGAGATAAGGTTGTTTCTGGAAAAGATTCGACCCATTGACAAGAAGCTCCAGTACCAAGTTGAGAAGCTCACCAAGGTTACTACGAGCACAACCGAAGATGTAGGGCCAAGTGGGAAGGAACCACAACCCAATGTGCCTCAGCAAACAGATGATTTGCTGAGATACCGCCCTAACCCTGACATGCTTGTTAGCAAAACAGATGTGAATTCTAAGGATGGTAAGGATGTGTATCGACCTCCCAAATTTGCCCCGACTTCGATGGAGGAAGATAAGTTGTCAAAGCAGGAAAAAAATGCATTGAGAAGGGATAAGAATACTTTACGACAAGCTAAGCAGAGTGCTTATGTGAGGGAACTGGTGGATGATTTGGAGGGGAGGCCTGAAGAGATTGTAGAACGTGTTGGAGCTGAAAGCATAGAACTAGCGAGATACAGGGCAAAGAGGGATGAACGTGAACGGCAAGAAGAGGAACTTTTCATGCGTGCTCCTATTACAAAGAAGGAGAAACAGAGAGAAAAACACTTAAAGAAATCAAGAAATGGGTTGCTTGGTTTGACGGAGAATTTCTATGATGAAATTAAGGGTTTACCCTTGGACGATGAGAATGATGAGCAGGTTGGAAGCTCCCGCAGTGCTAGGGGTGGAATGGGGAGGCATAAGAAGCGCAAGGTATGTCATAATCTCTTAAAAAGGAATCAAATGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

335

Amino Acids

38.45

Weight (kDa)

9.52

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07840 AT1G07840 AT1G07840
fragaria_vesca	FvH4_5g34380 FvH4_5g34380 FvH4_5g34380 FvH4_5g34380
malus_domestica	MD08G1202000.v1.1 MD08G1202600.v1.1 MD15G1388800.v1.1
prunus_persica	Prupe.1G535400_v2.0.a1 Prupe.1G535400_v2.0.a1
pyrus_communis	pycom08g17500
rosa_chinensis	RchiOBHm_Chr7g0234971
rosa_laevigata	RLG00000001189
rosa_multiflora	Rmu_sc0000039.1_g000015
rosa_roxburghii	Rroxscaffold_3G00226410
rosa_rugosa	Rorug07G0286800
rosa_samantha	Rh7AG441600 Rh7BG414400 Rh7CG462900 Rh7DG431100
rosa_wichuraiana	Rw7G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	898
AccB1I	GGYRCC	1 cut(s)	270
AciI	CCGC	2 cut(s)	460, 922
AcsI	RAATTY	4 cut(s)	16, 499, 536, 856
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	4 cut(s)	15, 21, 185, 261
AluBI	AGCT	9 cut(s)	56, 64, 125, 177, 340, 361, 623, 701, 918
AluI	AGCT	9 cut(s)	56, 64, 125, 177, 340, 361, 623, 701, 918
Alw21I	GWGCWC	2 cut(s)	383, 781
AoxI	GGCC	2 cut(s)	398, 671
ApeKI	GCWGC	2 cut(s)	68, 199
ApoI	RAATTY	4 cut(s)	16, 499, 536, 856
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	960
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	151, 355
BaeGI	GKGCMC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	270
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	383, 781
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	55, 186
BccI	CCATC	2 cut(s)	503, 547
BceAI	ACGGC	1 cut(s)	767
BfaI	CTAG	2 cut(s)	716, 930
BfuAI	ACCTGC	1 cut(s)	898
BisI	GCNGC	2 cut(s)	69, 200
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	2 cut(s)	70, 201
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	272, 414
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	366, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse1I	ACTGG	3 cut(s)	217, 343, 654
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	366, 885
BseGI	GGATG	4 cut(s)	514, 523, 661, 745
BseJI	GATNNNNATC	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	443, 446
BseNI	ACTGG	3 cut(s)	217, 343, 654
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	55, 186
BseYI	CCCAGC	1 cut(s)	60
BshFI	GGCC	2 cut(s)	400, 673
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	383, 781
BsnI	GGCC	2 cut(s)	400, 673
Bsp1286I	GDGCHC	3 cut(s)	273, 383, 781
Bsp1720I	GCTNAGC	1 cut(s)	624
BspACI	CCGC	2 cut(s)	460, 922
BspANI	GGCC	2 cut(s)	400, 673
BspCNI	CTCAG	2 cut(s)	444, 445
BspLI	GGNNCC	2 cut(s)	272, 414
BspMI	ACCTGC	1 cut(s)	898
BspT107I	GGYRCC	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	217, 343, 654
BssECI	CCNNGG	2 cut(s)	366, 885
BssT1I	CCWWGG	2 cut(s)	366, 885
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	672, 753
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	66, 777
BstDEI	CTNAG	4 cut(s)	432, 452, 504, 624
BstF5I	GGATG	4 cut(s)	514, 523, 661, 745
BstHHI	GCGC	1 cut(s)	960
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 199, 955
BstNSI	RCATGY	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	55, 186
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	400, 673
BtsCI	GGATG	4 cut(s)	514, 523, 661, 745
BtsI	GCAGTG	1 cut(s)	931
BtsIMutI	CAGTG	2 cut(s)	111, 931
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	2 cut(s)	66, 777
CfoI	GCGC	1 cut(s)	960
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	475, 772
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	432, 452, 504, 624
Eam1104I	CTCTTC	2 cut(s)	672, 753
EarI	CTCTTC	2 cut(s)	672, 753
Eco130I	CCWWGG	2 cut(s)	366, 885
Eco147I	AGGCCT	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	366, 885
EcoT22I	ATGCAT	1 cut(s)	592
ErhI	CCWWGG	2 cut(s)	366, 885
FaeI	CATG	2 cut(s)	478, 775
FaiI	YATR	8 cut(s)	476, 639, 710, 773, 864, 951, 967, 972
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FatI	CATG	2 cut(s)	474, 771
FauI	CCCGC	1 cut(s)	929
Fnu4HI	GCNGC	2 cut(s)	69, 200
FokI	GGATG	4 cut(s)	521, 530, 668, 752
Fsp4HI	GCNGC	2 cut(s)	69, 200
FspBI	CTAG	2 cut(s)	716, 930
GlaI	GCGC	1 cut(s)	959
GluI	GCNGC	2 cut(s)	69, 200
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	400, 673
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	960
Hin1II	CATG	2 cut(s)	478, 775
Hin6I	GCGC	1 cut(s)	958
HinP1I	GCGC	1 cut(s)	958
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	2 cut(s)	319, 988
HphI	GGTGA	2 cut(s)	151, 355
Hpy166II	GTNNAC	2 cut(s)	749, 881
Hpy188I	TCNGA	2 cut(s)	34, 159
Hpy188III	TCNNGA	3 cut(s)	182, 311, 828
Hpy8I	GTNNAC	2 cut(s)	749, 881
HpyAV	CCTTC	5 cut(s)	82, 86, 403, 591, 787
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	691, 745
HpyCH4V	TGCA	2 cut(s)	134, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 199, 955
HpyF3I	CTNAG	4 cut(s)	432, 452, 504, 624
HpySE526I	ACGT	2 cut(s)	691, 745
Hsp92II	CATG	2 cut(s)	478, 775
HspAI	GCGC	1 cut(s)	958
LmnI	GCTCC	5 cut(s)	61, 345, 698, 784, 923
Lsp1109I	GCAGC	2 cut(s)	55, 186
MaeI	CTAG	2 cut(s)	716, 930
MaeII	ACGT	2 cut(s)	691, 745
MaeIII	GTNAC	2 cut(s)	219, 370
MboII	GAAGA	5 cut(s)	17, 401, 572, 689, 770
MhlI	GDGCHC	3 cut(s)	273, 383, 781
MluCI	AATT	6 cut(s)	16, 151, 499, 536, 856, 870
MmeI	TCCRAC	3 cut(s)	182, 676, 892
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	4 cut(s)	128, 818, 873, 980
MwoI	GCNNNNNNNGC	3 cut(s)	131, 199, 955
NlaIII	CATG	2 cut(s)	478, 775
NlaIV	GGNNCC	2 cut(s)	272, 414
NmuCI	GTSAC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	319, 988
PkrI	GCNGC	2 cut(s)	70, 201
PspFI	CCCAGC	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	272, 414
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	128, 818, 873, 980
SatI	GCNGC	2 cut(s)	69, 200
Sau96I	GGNCC	1 cut(s)	398
SduI	GDGCHC	3 cut(s)	273, 383, 781
Sse9I	AATT	6 cut(s)	16, 151, 499, 536, 856, 870
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	2 cut(s)	460, 922
SspMI	CTAG	2 cut(s)	716, 930
StuI	AGGCCT	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	366, 885
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	694, 748
TaqI	TCGA	3 cut(s)	322, 526, 551
TasI	AATT	6 cut(s)	16, 151, 499, 536, 856, 870
TfiI	GAWTC	2 cut(s)	319, 988
Tru1I	TTAA	4 cut(s)	128, 818, 873, 980
Tru9I	TTAA	4 cut(s)	128, 818, 873, 980
TscAI	CASTG	2 cut(s)	111, 931
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	2 cut(s)	68, 199
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	4 cut(s)	101, 756, 760, 882
TspGWI	ACGGA	1 cut(s)	866
TspRI	CASTG	2 cut(s)	111, 931
XapI	RAATTY	4 cut(s)	16, 499, 536, 856
XceI	RCATGY	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	2 cut(s)	716, 930
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.