Rw7G036690

Sas10/Utp3/C1D family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008750
Physical Location & Seq
Forward (+)
55470247 .. 55473686
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036690.1

Sequence Viewer

Length: 996 bp
ATGGAGGATGCTTCAAATTCAAATGGAACCCAGGAAGATATAGTAAACAAAGAAGCGCCTCAGCTTGCGGCTGTGTTGAAGGAAATGAAGGAAGGATTGGATGTAGTTGATTTCAAAGTCAGGTCTTTAACTGCCAAGGTGAAAGAAAATCACTATCCGACATCCCAAGGGTTTCACTATCTTGAAGCCAAGAATATGCTGCTTCTGCAATATTGCCTGTCACTTGTCTATTACTTACTTCGCAAGGCTAAAGGCCTCCCAATCAGTGAACATCCGGTTGTCCAGAGCCTTGTCGAGACAAGGTTGTTTTTGGAAAAGATTCGACCTATTGACAAGAAGATGCAGTACCAAATTGAGAAGCTGACTAAGGTTACCGCAAGCACAACTGAGAATATACAGCCAAGTGAGAAGCAATCACAATCAAATAAAACAGAAGATTTGTTGAGTTATCGCCCGAACCCTGAAATGATTCCTAGCAAAATAGACTTGACTTCTGAGGATCGTGGCAAGTATATACCACCCAAAATTGCACCAACTTCAATGGAGAAAGATAAGTCCTCAAGATTTGAAAGAAATGCACTCAGAAAGGAGGAGAACACTCTACGACAGTCTAAGCATAGTCGTTATGTGAGGGACATGGTTGACGATTTTGAAGGGAGACCTGAAGAGATTGTGGAAAGTTTTGGAGCTGAAAGTGTAGAATTAGAAAGATTTAAGGCAAAGTTGGATGAGCGGGCACGGATAGAAGAGGATCTTTTTACTCGTGCTCCTATTACAAAGGCAGAGAAAAGGAAGGCAAAACACTTACTAAAGTCAAGAAATGGGTTGCTTGATTTGACCGAAAATTTCTATGAGGAAATTAAAACTTTACCATTGGAAGAGGGGAATGATGAGATGTCAGGTTTCAGTAGTGCTAGAGGTGGAAGAAGCGGAAGAGGTGGAAGAAGTGGAAAAGGTGGAATGAGGGGCCATAAGAAGCGCAAGATGAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

331

Amino Acids

37.96

Weight (kDa)

9.22

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 26 - 106 3e-15 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 733
AciI CCGC 4 cut(s) 68, 375, 733, 930
AclWI GGATC 2 cut(s) 507, 759
AcsI RAATTY 2 cut(s) 16, 844
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 1 cut(s) 347
AgsI TTSAA 8 cut(s) 15, 21, 79, 115, 185, 540, 569, 653
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 3 cut(s) 64, 361, 689
AluI AGCT 3 cut(s) 64, 361, 689
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 2 cut(s) 290, 652
AlwI GGATC 2 cut(s) 507, 759
AoxI GGCC 2 cut(s) 253, 967
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 16, 844
Asp700I GAANNNNTTC 2 cut(s) 318, 468
AspLEI GCGC 2 cut(s) 58, 981
AspS9I GGNCC 1 cut(s) 967
AsuHPI GGTGA 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 739
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BauI CACGAG 1 cut(s) 762
Bbv12I GWGCWC 1 cut(s) 769
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 290, 652
BfaI CTAG 2 cut(s) 474, 915
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 2 cut(s) 69, 200
BlsI GCNGC 2 cut(s) 70, 201
Bme1390I CCNGG 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 967
BmiI GGNNCC 2 cut(s) 28, 968
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 544
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 3 cut(s) 30, 135, 166
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 751, 781
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 3 cut(s) 30, 135, 166
BseGI GGATG 5 cut(s) 13, 106, 161, 271, 733
BseMII CTCAG 4 cut(s) 74, 378, 486, 595
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 1 cut(s) 186
BshFI GGCC 2 cut(s) 255, 969
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 647
BsmAI GTCTC 2 cut(s) 290, 652
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 2 cut(s) 255, 969
Bso31I GGTCTC 1 cut(s) 652
Bsp1286I GDGCHC 2 cut(s) 739, 769
Bsp143I GATC 2 cut(s) 499, 751
BspACI CCGC 4 cut(s) 68, 375, 733, 930
BspANI GGCC 2 cut(s) 255, 969
BspCNI CTCAG 4 cut(s) 73, 379, 487, 594
BspLI GGNNCC 2 cut(s) 28, 968
BspPI GGATC 2 cut(s) 507, 759
BspTNI GGTCTC 1 cut(s) 652
BsrBI CCGCTC 1 cut(s) 733
BssECI CCNNGG 3 cut(s) 30, 135, 166
BssMI GATC 2 cut(s) 499, 751
BssSI CACGAG 1 cut(s) 762
BssT1I CCWWGG 2 cut(s) 135, 166
Bst2BI CACGAG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 4 cut(s) 660, 741, 873, 928
BstC8I GCNNGC 3 cut(s) 66, 379, 735
BstDEI CTNAG 6 cut(s) 60, 366, 387, 495, 581, 612
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 5 cut(s) 13, 106, 161, 271, 733
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 2 cut(s) 58, 981
BstKTI GATC 2 cut(s) 502, 754
BstMAI GTCTC 2 cut(s) 290, 652
BstMBI GATC 2 cut(s) 499, 751
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 739
BstV1I GCAGC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 2 cut(s) 255, 969
BtsCI GGATG 5 cut(s) 13, 106, 161, 271, 733
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 66, 379, 735
CfoI GCGC 2 cut(s) 58, 981
Cfr13I GGNCC 1 cut(s) 967
Csp6I GTAC 1 cut(s) 346
CviAII CATG 1 cut(s) 637
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 6 cut(s) 60, 366, 387, 495, 581, 612
DpnI GATC 2 cut(s) 501, 753
DpnII GATC 2 cut(s) 499, 751
Eam1104I CTCTTC 4 cut(s) 660, 741, 873, 928
EarI CTCTTC 4 cut(s) 660, 741, 873, 928
Eco130I CCWWGG 2 cut(s) 135, 166
Eco147I AGGCCT 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 135, 166
ErhI CCWWGG 2 cut(s) 135, 166
FaeI CATG 1 cut(s) 640
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FaqI GGGAC 1 cut(s) 647
FatI CATG 1 cut(s) 636
FauI CCCGC 1 cut(s) 726
Fnu4HI GCNGC 2 cut(s) 69, 200
FokI GGATG 5 cut(s) 20, 113, 148, 258, 740
Fsp4HI GCNGC 2 cut(s) 69, 200
FspBI CTAG 2 cut(s) 474, 915
GlaI GCGC 2 cut(s) 57, 980
GluI GCNGC 2 cut(s) 69, 200
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 255, 969
HapII CCGG 1 cut(s) 275
HhaI GCGC 2 cut(s) 58, 981
Hin1II CATG 1 cut(s) 640
Hin6I GCGC 2 cut(s) 56, 979
HinP1I GCGC 2 cut(s) 56, 979
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 2 cut(s) 319, 469
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 46, 269, 643
Hpy188I TCNGA 3 cut(s) 159, 496, 584
Hpy188III TCNNGA 5 cut(s) 182, 283, 295, 561, 816
Hpy8I GTNNAC 3 cut(s) 46, 269, 643
HpyAV CCTTC 5 cut(s) 73, 82, 86, 647, 787
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4V TGCA 4 cut(s) 208, 343, 530, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 6 cut(s) 60, 366, 387, 495, 581, 612
Hsp92II CATG 1 cut(s) 640
HspAI GCGC 2 cut(s) 56, 979
Kzo9I GATC 2 cut(s) 499, 751
LmnI GCTCC 2 cut(s) 686, 772
LpnPI CCDG 9 cut(s) 17, 44, 106, 230, 288, 296, 474, 675, 885
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 330
MaeI CTAG 2 cut(s) 474, 915
MaeIII GTNAC 2 cut(s) 219, 370
MalI GATC 2 cut(s) 501, 753
MbiI CCGCTC 1 cut(s) 733
MboI GATC 2 cut(s) 499, 751
MboII GAAGA 9 cut(s) 47, 349, 446, 677, 758, 890, 936, 945, 954
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 2 cut(s) 739, 769
MluCI AATT 6 cut(s) 16, 351, 525, 701, 844, 858
MmeI TCCRAC 2 cut(s) 182, 705
MroXI GAANNNNTTC 2 cut(s) 318, 468
MseI TTAA 3 cut(s) 128, 714, 861
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 2 cut(s) 499, 751
NlaIII CATG 1 cut(s) 640
NlaIV GGNNCC 2 cut(s) 28, 968
NmuCI GTSAC 1 cut(s) 219
PceI AGGCCT 1 cut(s) 255
PdmI GAANNNNTTC 2 cut(s) 318, 468
PfeI GAWTC 2 cut(s) 319, 469
PkrI GCNGC 2 cut(s) 70, 201
Psp6I CCWGG 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 28, 968
PspPI GGNCC 1 cut(s) 967
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 3 cut(s) 128, 714, 861
SatI GCNGC 2 cut(s) 69, 200
Sau3AI GATC 2 cut(s) 499, 751
Sau96I GGNCC 1 cut(s) 967
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 2 cut(s) 739, 769
SfaNI GCATC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 6 cut(s) 16, 351, 525, 701, 844, 858
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 4 cut(s) 68, 375, 733, 930
SspI AATATT 1 cut(s) 212
SspMI CTAG 2 cut(s) 474, 915
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 135, 166
TaaI ACNGT 1 cut(s) 609
TaqI TCGA 2 cut(s) 294, 322
TaqII GACCGA 1 cut(s) 854
TasI AATT 6 cut(s) 16, 351, 525, 701, 844, 858
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 319, 469
Tru1I TTAA 3 cut(s) 128, 714, 861
Tru9I TTAA 3 cut(s) 128, 714, 861
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 754
TspRI CASTG 1 cut(s) 271
XapI RAATTY 2 cut(s) 16, 844
XmnI GAANNNNTTC 2 cut(s) 318, 468
XspI CTAG 2 cut(s) 474, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.