Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008750

Physical Location & Seq

Genomic Coordinates Reverse (-)

25051741 .. 25054888

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34380.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGGATGCTTCAAATTCAAAAGGAGGCCAGGAAGATATAATAAACAAAGAAGCGCCTCAGCTTGTGGCTGTGTTGAAGGAAATGAAGGAAGGATTAGATGTAGTTGATTTCAAAGTCAAGGCTTTAATTGCCAAGGTGAAAGAAAATCAGTATCCTACATCCCAAGGGTTTCACTATCTTGAAGCCAAGAATATGCTGCTTCTGCACTATTGCCTGTCACTTGTCTATTACTTTCTTCGCAAGGCTGAAGGGCTCTTAATCAGTGGACATCCGGTTGTTCAGAGCCTCGTTGAGACAAGGTTGTTTCTGGAAAAGATTCGACCTATTGACAAGAAGATGCAGTACCAAATTGAGAAGCTGACCAAGGTTACAGCGTGCACAACTGAGAATGCACAGCTAAGTGAGAAGCAATCACAATCAAATAACACTAAAGATTTGTTGAGTTATCGCCCAAACCCTGATATGATTCCTAGCAAAATAGACACAACTTCTGAGGATCATGGCAAGTATATACCACCCAAAATTGCACCAACTTCAATGGAGAAAGATAAGTCATCAAGATTCGAAAGAAATGCACTGAGAAAGGAAGAGAACACCATACGACAATCTAAGCATAGTCGTTATGTTAAAGACATGGTTGATGATTTCGAAGGGAGACCTGAAGAGATTGTGGATGGTTATGGACCTCAAAGTTATGAAGCAGAAAGATTTAAGGCAAAGCTGGATGAGCGTGCACGGCAAGAAGAGGAGCTCTTTACTCGTGCTCCTATTACAAAGGAGGAGAAAAGGAAGGCAAAACACTTATTAAAGTCGAGTAATGGGTTGCTTGGTTTGACCGAAAATTTCTTTGACGAAATTAAAAGTCTACCATTGGATGAGGGGAATGATGAGATGTCAAGTTTTAGTAACGCTAGAGATGGAAGAGGTGGAAGAAGCGGAAGAGGTGGAATGAGGGGCCATAAGAAGCGCAAGATGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

329

Amino Acids

37.61

Weight (kDa)

9.07

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	26 - 106	4.5e-14	Sas10/Utp3/C1D family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07840 AT1G07840 AT1G07840
fragaria_vesca	FvH4_5g34380 FvH4_5g34380 FvH4_5g34380 FvH4_5g34380
malus_domestica	MD08G1202000.v1.1 MD08G1202600.v1.1 MD15G1388800.v1.1
prunus_persica	Prupe.1G535400_v2.0.a1 Prupe.1G535400_v2.0.a1
pyrus_communis	pycom08g17500
rosa_chinensis	RchiOBHm_Chr7g0234971
rosa_laevigata	RLG00000001189
rosa_multiflora	Rmu_sc0000039.1_g000015
rosa_roxburghii	Rroxscaffold_3G00226410
rosa_rugosa	Rorug07G0286800
rosa_samantha	Rh7AG441600 Rh7BG414400 Rh7CG462900 Rh7DG431100
rosa_wichuraiana	Rw7G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	868
AciI	CCGC	1 cut(s)	939
AclWI	GGATC	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	16, 844
AcuI	CTGAAG	2 cut(s)	270, 684
AfaI	GTAC	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	15, 21, 79, 115, 185, 540
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	5 cut(s)	64, 361, 400, 724, 754
AluI	AGCT	5 cut(s)	64, 361, 400, 724, 754
Alw21I	GWGCWC	4 cut(s)	383, 739, 756, 769
Alw26I	GTCTC	2 cut(s)	290, 652
Alw44I	GTGCAC	2 cut(s)	379, 735
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	2 cut(s)	28, 958
ApaLI	GTGCAC	2 cut(s)	379, 735
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	16, 844
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	58, 972
AspS9I	GGNCC	2 cut(s)	686, 958
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	2 cut(s)	567, 651
AvaII	GGWCC	1 cut(s)	686
BaeGI	GKGCMC	2 cut(s)	383, 739
BanII	GRGCYC	2 cut(s)	258, 756
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BauI	CACGAG	1 cut(s)	762
Bbv12I	GWGCWC	4 cut(s)	383, 739, 756, 769
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	671, 914
BceAI	ACGGC	1 cut(s)	755
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	290, 652
BfaI	CTAG	2 cut(s)	474, 915
BfoI	RGCGCY	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	686, 958
BmiI	GGNNCC	1 cut(s)	959
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	60
Bpu14I	TTCGAA	2 cut(s)	567, 651
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	135, 166, 366
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	135, 166, 366
BseGI	GGATG	6 cut(s)	13, 161, 271, 682, 733, 883
BseMII	CTCAG	4 cut(s)	74, 378, 486, 572
BseRI	GAGGAG	2 cut(s)	764, 797
BseSI	GKGCMC	2 cut(s)	383, 739
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	30, 960
BsiHKAI	GWGCWC	4 cut(s)	383, 739, 756, 769
BsiSI	CCGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	290, 652
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	30, 960
Bso31I	GGTCTC	1 cut(s)	652
Bsp119I	TTCGAA	2 cut(s)	567, 651
Bsp1286I	GDGCHC	5 cut(s)	258, 383, 739, 756, 769
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	1 cut(s)	939
BspANI	GGCC	2 cut(s)	30, 960
BspCNI	CTCAG	4 cut(s)	73, 379, 487, 573
BspLI	GGNNCC	1 cut(s)	959
BspPI	GGATC	1 cut(s)	507
BspT104I	TTCGAA	2 cut(s)	567, 651
BspTNI	GGTCTC	1 cut(s)	652
BssECI	CCNNGG	3 cut(s)	135, 166, 366
BssMI	GATC	1 cut(s)	499
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	3 cut(s)	135, 166, 366
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	5 cut(s)	585, 660, 741, 919, 937
BstBI	TTCGAA	2 cut(s)	567, 651
BstC8I	GCNNGC	2 cut(s)	379, 735
BstDEI	CTNAG	6 cut(s)	60, 387, 401, 495, 581, 612
BstF5I	GGATG	6 cut(s)	13, 161, 271, 682, 733, 883
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 972
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	290, 652
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 205, 730, 739
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	383, 739
BstV1I	GCAGC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	30, 960
BtsCI	GGATG	6 cut(s)	13, 161, 271, 682, 733, 883
BtsIMutI	CAGTG	2 cut(s)	271, 578
Cac8I	GCNNGC	2 cut(s)	379, 735
CfoI	GCGC	2 cut(s)	58, 972
Cfr13I	GGNCC	2 cut(s)	686, 958
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	503, 637
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	6 cut(s)	60, 387, 401, 495, 581, 612
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
Eam1104I	CTCTTC	5 cut(s)	585, 660, 741, 919, 937
EarI	CTCTTC	5 cut(s)	585, 660, 741, 919, 937
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	3 cut(s)	135, 166, 366
Eco24I	GRGCYC	2 cut(s)	258, 756
Eco31I	GGTCTC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	2 cut(s)	270, 684
EcoICRI	GAGCTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	3 cut(s)	135, 166, 366
EcoT38I	GRGCYC	2 cut(s)	258, 756
ErhI	CCWWGG	3 cut(s)	135, 166, 366
FaeI	CATG	2 cut(s)	506, 640
FatI	CATG	2 cut(s)	502, 636
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	6 cut(s)	20, 148, 258, 689, 740, 890
FriOI	GRGCYC	2 cut(s)	258, 756
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	2 cut(s)	474, 915
GlaI	GCGC	2 cut(s)	57, 971
GluI	GCNGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	30, 960
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	2 cut(s)	58, 972
Hin1II	CATG	2 cut(s)	506, 640
Hin6I	GCGC	2 cut(s)	56, 970
HinP1I	GCGC	2 cut(s)	56, 970
HinfI	GANTC	3 cut(s)	319, 469, 564
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	269, 381, 737, 869
Hpy188I	TCNGA	2 cut(s)	285, 496
Hpy188III	TCNNGA	3 cut(s)	182, 311, 561
Hpy8I	GTNNAC	4 cut(s)	269, 381, 737, 869
HpyAV	CCTTC	6 cut(s)	73, 82, 86, 245, 647, 787
HpyCH4V	TGCA	7 cut(s)	208, 343, 381, 395, 530, 578, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 205, 730, 739
HpyF3I	CTNAG	6 cut(s)	60, 387, 401, 495, 581, 612
Hsp92II	CATG	2 cut(s)	506, 640
HspAI	GCGC	2 cut(s)	56, 970
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	2 cut(s)	751, 772
LpnPI	CCDG	8 cut(s)	17, 44, 230, 288, 296, 474, 675, 710
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	474, 915
MaeIII	GTNAC	3 cut(s)	219, 370, 908
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	9 cut(s)	47, 230, 349, 602, 677, 758, 936, 945, 954
MhlI	GDGCHC	5 cut(s)	258, 383, 739, 756, 769
MluCI	AATT	6 cut(s)	16, 129, 351, 525, 844, 858
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	6 cut(s)	128, 260, 630, 714, 809, 861
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	131, 205, 730, 739
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	2 cut(s)	506, 640
NlaIV	GGNNCC	1 cut(s)	959
NmuCI	GTSAC	1 cut(s)	219
NspV	TTCGAA	2 cut(s)	567, 651
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	319, 469, 564
PkrI	GCNGC	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	959
PspPI	GGNCC	2 cut(s)	686, 958
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	128, 260, 630, 714, 809, 861
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	2 cut(s)	686, 958
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	5 cut(s)	258, 383, 739, 756, 769
SfaNI	GCATC	1 cut(s)	330
SfuI	TTCGAA	2 cut(s)	567, 651
SinI	GGWCC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	16, 129, 351, 525, 844, 858
SsiI	CCGC	1 cut(s)	939
SspMI	CTAG	2 cut(s)	474, 915
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	3 cut(s)	135, 166, 366
TaqI	TCGA	4 cut(s)	322, 567, 651, 815
TaqII	GACCGA	1 cut(s)	854
TasI	AATT	6 cut(s)	16, 129, 351, 525, 844, 858
TfiI	GAWTC	3 cut(s)	319, 469, 564
Tru1I	TTAA	6 cut(s)	128, 260, 630, 714, 809, 861
Tru9I	TTAA	6 cut(s)	128, 260, 630, 714, 809, 861
TscAI	CASTG	2 cut(s)	271, 585
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	101, 714
TspRI	CASTG	2 cut(s)	271, 585
VneI	GTGCAC	2 cut(s)	379, 735
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	2 cut(s)	16, 844
XmiI	GTMKAC	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	2 cut(s)	474, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.