Prupe.1G535400_v2.0.a1

Sas10/Utp3/C1D family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008750
Physical Location & Seq
Reverse (-)
43756314 .. 43759326
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G535400.2

Sequence Viewer

Length: 978 bp
ATGGAGGACGCTACAATTTCAAACGCAAGCTCTGAAGATAGAGTAAAGGCAGAAGCTCCTCAGCTTGCTGCTGTGCTGAAGGAAATGAAGGAAGGATTAGATACAGTGAGGATCAAAGTCCAAGCTTTAACTGCAAAGGTGAAATCAAATAATTATCCAACAGTGGAAGGGATAAGCTATCTTGAAGCCAAGCATTTGCTGCTCTTAAACTATTGCCAGTCACTTGTCTATTACTTGCTTCGCAAGGCTAGAGGGTTCTCAATAAATGGCCATCCCGTTGTTCAGAGCCTCGTGGAGATAAGGTTGTTTCTGGAAAAGATTCGACCCATTGACAAGAAGCTACAGTACCAAATCGAGAAGCTCACCAAGGTTACTGCAAGCACAACTGAGAATGTACAGCCAGGTGGAAAGGAATCACAAGCGGGTGTGCCTCAGCAAACAGACGATTTGTTGAAATATCACCCGAACCCTGACATGCTTGTTAGCAAAGCAGATGTGACTTCTAAGGATGGTAATGATGTGTATCGACCTCCCAAATTTGCCCCCACTTCGATGGAGGAAGATAAGTTGTCAAAGCAGGACAAAAATGCATTGAGAAAGGAAAAGAATACTCTACGACAAGCTAGGCATAGTGCTTTTGTTAGGGAACTGGTGGATGATTTGGAGGGGAGGCCTGAAGAGATTGTAGAAAGTGTTGGAGCTGAAAGTTTAGAACTAGCCAGATACAGGGCAAAGATGGAGGACCGTGCACGGCAAGAAGAGGAGCTTTTTATGCGTGCTCCTATTACAAAGAAGGAGAAACAGAGGGAGAAACACTTAAAGAAGTCAAGAAATGGGTTGCTTGGTTTGACGGACAATTTCTATGATGAAGTCAGAACTTTACCTTTGGAAGATGAAAATGATGGGCGGATTCCAAGCTTCAGTAGTGCTAGGGGTGGAATGGGGGGAAGACATAAGAAGCGCAAGATGAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sas10_Utp3

Protein Analysis

326

Amino Acids

36.99

Weight (kDa)

9.31

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 422, 907
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 4 cut(s) 54, 98, 696, 904
AfaI GTAC 2 cut(s) 347, 396
AfiI CCNNNNNNNGG 1 cut(s) 726
AgsI TTSAA 3 cut(s) 21, 185, 454
AjnI CCWGG 1 cut(s) 400
Alw21I GWGCWC 2 cut(s) 751, 781
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 268, 671
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 2 cut(s) 68, 199
ApoI RAATTY 1 cut(s) 536
Asp700I GAANNNNTTC 1 cut(s) 318
AspLEI GCGC 1 cut(s) 963
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 3 cut(s) 151, 355, 452
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 751
BalI TGGCCA 1 cut(s) 270
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 955
Bbv12I GWGCWC 2 cut(s) 751, 781
BbvCI CCTCAGC 2 cut(s) 60, 432
BbvI GCAGC 2 cut(s) 55, 186
BccI CCATC 5 cut(s) 279, 503, 547, 730, 896
BceAI ACGGC 1 cut(s) 767
BciT130I CCWGG 1 cut(s) 402
BfaI CTAG 4 cut(s) 249, 624, 716, 930
BfmI CTRYAG 1 cut(s) 341
BisI GCNGC 2 cut(s) 69, 200
BlsI GCNGC 2 cut(s) 70, 201
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 955
Bpu10I CCTNAGC 2 cut(s) 60, 432
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 726
Bse1I ACTGG 2 cut(s) 217, 654
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 3 cut(s) 271, 514, 661
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 726
BseMII CTCAG 3 cut(s) 74, 378, 446
BseNI ACTGG 2 cut(s) 217, 654
BseRI GAGGAG 2 cut(s) 48, 776
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 2 cut(s) 55, 186
BshFI GGCC 2 cut(s) 270, 673
BsiHKAI GWGCWC 2 cut(s) 751, 781
BslI CCNNNNNNNGG 1 cut(s) 726
BsnI GGCC 2 cut(s) 270, 673
Bsp1286I GDGCHC 2 cut(s) 751, 781
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 422, 907
BspANI GGCC 2 cut(s) 270, 673
BspCNI CTCAG 3 cut(s) 73, 379, 445
BspPI GGATC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 394
BsrI ACTGG 2 cut(s) 217, 654
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 4 cut(s) 106, 163, 345, 746
Bst6I CTCTTC 2 cut(s) 672, 753
BstAPI GCANNNNNTGC 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 394
BstC8I GCNNGC 4 cut(s) 28, 66, 379, 777
BstDEI CTNAG 4 cut(s) 60, 387, 432, 504
BstF5I GGATG 3 cut(s) 271, 514, 661
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 131, 199, 772
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 751
BstV1I GCAGC 2 cut(s) 55, 186
BstV2I GAAGAC 1 cut(s) 955
BstXI CCANNNNNNTGG 1 cut(s) 553
BsuRI GGCC 2 cut(s) 270, 673
BtsCI GGATG 3 cut(s) 271, 514, 661
BtsIMutI CAGTG 2 cut(s) 111, 168
Cac8I GCNNGC 4 cut(s) 28, 66, 379, 777
CfoI GCGC 1 cut(s) 963
Cfr13I GGNCC 1 cut(s) 742
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 346, 395
CviAII CATG 1 cut(s) 475
CviQI GTAC 2 cut(s) 346, 395
DdeI CTNAG 4 cut(s) 60, 387, 432, 504
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 672, 753
EarI CTCTTC 2 cut(s) 672, 753
EciI GGCGGA 1 cut(s) 922
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 4 cut(s) 54, 98, 696, 904
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 478
FaiI YATR 5 cut(s) 476, 630, 773, 864, 954
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 1 cut(s) 474
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 69, 200
FokI GGATG 3 cut(s) 258, 521, 668
Fsp4HI GCNGC 2 cut(s) 69, 200
FspBI CTAG 4 cut(s) 249, 624, 716, 930
GlaI GCGC 1 cut(s) 962
GluI GCNGC 2 cut(s) 69, 200
HaeIII GGCC 2 cut(s) 270, 673
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 963
Hin1II CATG 1 cut(s) 478
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HindIII AAGCTT 2 cut(s) 123, 916
HinfI GANTC 3 cut(s) 319, 413, 910
HphI GGTGA 3 cut(s) 151, 355, 452
Hpy166II GTNNAC 1 cut(s) 749
Hpy188I TCNGA 3 cut(s) 34, 285, 875
Hpy188III TCNNGA 4 cut(s) 182, 311, 355, 828
Hpy8I GTNNAC 1 cut(s) 749
HpyAV CCTTC 5 cut(s) 73, 82, 86, 161, 787
HpyCH4III ACNGT 4 cut(s) 106, 163, 345, 746
HpyCH4V TGCA 4 cut(s) 134, 377, 590, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 199, 772
HpyF3I CTNAG 4 cut(s) 60, 387, 432, 504
Hsp92II CATG 1 cut(s) 478
HspAI GCGC 1 cut(s) 961
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 4 cut(s) 61, 698, 763, 784
Lsp1109I GCAGC 2 cut(s) 55, 186
MaeI CTAG 4 cut(s) 249, 624, 716, 930
MaeIII GTNAC 3 cut(s) 219, 370, 496
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 6 cut(s) 47, 572, 689, 770, 902, 960
MhlI GDGCHC 2 cut(s) 751, 781
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 4 cut(s) 15, 151, 536, 856
MluNI TGGCCA 1 cut(s) 270
MmeI TCCRAC 2 cut(s) 182, 676
Mox20I TGGCCA 1 cut(s) 270
Mph1103I ATGCAT 1 cut(s) 592
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 270
MseI TTAA 3 cut(s) 128, 206, 818
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 131, 199, 772
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 219, 496
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 478
PceI AGGCCT 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 319, 413, 910
PkrI GCNGC 2 cut(s) 70, 201
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspPI GGNCC 1 cut(s) 742
RsaI GTAC 2 cut(s) 347, 396
RsaNI GTAC 2 cut(s) 346, 395
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 3 cut(s) 128, 206, 818
SatI GCNGC 2 cut(s) 69, 200
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 742
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 751, 781
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 4 cut(s) 15, 151, 536, 856
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 2 cut(s) 422, 907
SspMI CTAG 4 cut(s) 249, 624, 716, 930
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 4 cut(s) 106, 163, 345, 746
TaqI TCGA 4 cut(s) 322, 354, 526, 551
TasI AATT 4 cut(s) 15, 151, 536, 856
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 3 cut(s) 319, 413, 910
Tru1I TTAA 3 cut(s) 128, 206, 818
Tru9I TTAA 3 cut(s) 128, 206, 818
TscAI CASTG 2 cut(s) 111, 168
TseFI GTSAC 2 cut(s) 219, 496
TseI GCWGC 2 cut(s) 68, 199
Tsp45I GTSAC 2 cut(s) 219, 496
TspDTI ATGAA 3 cut(s) 101, 882, 909
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 2 cut(s) 111, 168
VneI GTGCAC 1 cut(s) 747
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 4 cut(s) 249, 624, 716, 930
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.