Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000039.1

Orthogroup ID

OG0008750

Physical Location & Seq

Genomic Coordinates Reverse (-)

115945 .. 119018

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000039.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgggggatgcttcaaattcaaatggaacccaggaagatatagtaaacaaagaagcgcctcagcttgcggctgtgttgaaggaaatgaaggaaggattagatgtggttgatttcaaagtcagggctttaactgccaaggtgaaagaaaatcagtatccgacatcccaagggtttcactatcttgaagccaagaatatgctgcttctgcaatattgcctgtcacttgtctattacttacttcgcaaggctaaagggctctcaatcagtgaacatccggttgtccagagccttgtcgagacaaggttgtttttggaaaagattcgacctattgacaagaagatgcagtaccaaattgagaagctgactaaggttaccgcaagcaccaccgagaatatacagccaagtgagaagcaatcacaatcaaatagaacagaagatttgttgagttatcgcccgaaccctgaaatgattcctagcaaaatagacgtgacttctgaggatcgtggcaagtatataccacccaaaattgcaccgacttcaatggagaaagataagtcctcaagatttgaaagaaatgcactcagaaaggaggagaacactctacgacagtctaagcatagtcgttatgtgagggacatggttgacgattttgaagggagacctgaagagattgtggaaagttttggagctgaaagtgtagaattagaaagatttaaggcaaagttggatgagcgggcacggatagaagaggatctttttactcgtgctcctattacaaaggcagagaaaaggaaggcaaaacacttattaaagtcaagaaatgggttgcttgatttgactgaaaatttctatgaggaaattaaaactttaccattggaagaggggaatgatgagatgtcaggtttcagtagtgctagaggtggaagaagcggaagaggcggaagaagtggaaaaggtggaatgaggggccataagaagcgcaaggcattgaccattttggatcattttgcagatgaggcattgaaggacaaacttatgcagcttcataactccatttgccttgggtttgacgttccaatgagcttcgtacacgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10_Utp3

Protein Analysis

365

Amino Acids

41.63

Weight (kDa)

8.73

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07840 AT1G07840 AT1G07840
fragaria_vesca	FvH4_5g34380 FvH4_5g34380 FvH4_5g34380 FvH4_5g34380
malus_domestica	MD08G1202000.v1.1 MD08G1202600.v1.1 MD15G1388800.v1.1
prunus_persica	Prupe.1G535400_v2.0.a1 Prupe.1G535400_v2.0.a1
pyrus_communis	pycom08g17500
rosa_chinensis	RchiOBHm_Chr7g0234971
rosa_laevigata	RLG00000001189
rosa_multiflora	Rmu_sc0000039.1_g000015
rosa_roxburghii	Rroxscaffold_3G00226410
rosa_rugosa	Rorug07G0286800
rosa_samantha	Rh7AG441600 Rh7BG414400 Rh7CG462900 Rh7DG431100
rosa_wichuraiana	Rw7G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	733
AciI	CCGC	5 cut(s)	68, 375, 733, 930, 939
AclWI	GGATC	3 cut(s)	507, 759, 1008
AcsI	RAATTY	2 cut(s)	16, 844
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	2 cut(s)	347, 1089
AgsI	TTSAA	9 cut(s)	15, 21, 79, 115, 185, 540, 569, 653, 1024
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	5 cut(s)	64, 361, 689, 1042, 1083
AluI	AGCT	5 cut(s)	64, 361, 689, 1042, 1083
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	2 cut(s)	290, 652
AlwI	GGATC	3 cut(s)	507, 759, 1008
AoxI	GGCC	1 cut(s)	967
ApeKI	GCWGC	2 cut(s)	199, 1039
ApoI	RAATTY	2 cut(s)	16, 844
Asp700I	GAANNNNTTC	2 cut(s)	318, 468
AspLEI	GCGC	2 cut(s)	58, 981
AspS9I	GGNCC	1 cut(s)	967
AsuHPI	GGTGA	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BauI	CACGAG	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	186, 1051
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	290, 652
BfaI	CTAG	2 cut(s)	474, 915
BfoI	RGCGCY	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	3 cut(s)	69, 200, 1040
BlsI	GCNGC	3 cut(s)	70, 201, 1041
Bme1390I	CCNGG	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	967
BmiI	GGNNCC	2 cut(s)	28, 968
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	4 cut(s)	30, 135, 166, 1060
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	30, 135, 166, 1060
BseGI	GGATG	4 cut(s)	13, 161, 271, 733
BseMII	CTCAG	3 cut(s)	74, 486, 595
BseRI	GAGGAG	1 cut(s)	605
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	2 cut(s)	186, 1051
BshFI	GGCC	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	647
BsmAI	GTCTC	2 cut(s)	290, 652
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	969
Bso31I	GGTCTC	1 cut(s)	652
Bsp1286I	GDGCHC	3 cut(s)	258, 739, 769
Bsp143I	GATC	3 cut(s)	499, 751, 1000
BspACI	CCGC	5 cut(s)	68, 375, 733, 930, 939
BspANI	GGCC	1 cut(s)	969
BspCNI	CTCAG	3 cut(s)	73, 487, 594
BspLI	GGNNCC	2 cut(s)	28, 968
BspPI	GGATC	3 cut(s)	507, 759, 1008
BspTNI	GGTCTC	1 cut(s)	652
BsrBI	CCGCTC	1 cut(s)	733
BssECI	CCNNGG	4 cut(s)	30, 135, 166, 1060
BssMI	GATC	3 cut(s)	499, 751, 1000
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	3 cut(s)	135, 166, 1060
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	4 cut(s)	660, 741, 873, 928
BstC8I	GCNNGC	3 cut(s)	66, 379, 735
BstDEI	CTNAG	5 cut(s)	60, 366, 495, 581, 612
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	13, 161, 271, 733
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 981
BstKTI	GATC	3 cut(s)	502, 754, 1003
BstMAI	GTCTC	2 cut(s)	290, 652
BstMBI	GATC	3 cut(s)	499, 751, 1000
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 205, 936, 1016
BstNI	CCWGG	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	2 cut(s)	186, 1051
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	969
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	4 cut(s)	13, 161, 271, 733
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	66, 379, 735
CfoI	GCGC	2 cut(s)	58, 981
Cfr13I	GGNCC	1 cut(s)	967
Csp6I	GTAC	2 cut(s)	346, 1088
CviAII	CATG	1 cut(s)	637
CviQI	GTAC	2 cut(s)	346, 1088
DdeI	CTNAG	5 cut(s)	60, 366, 495, 581, 612
DpnI	GATC	3 cut(s)	501, 753, 1002
DpnII	GATC	3 cut(s)	499, 751, 1000
Eam1104I	CTCTTC	4 cut(s)	660, 741, 873, 928
EarI	CTCTTC	4 cut(s)	660, 741, 873, 928
EciI	GGCGGA	1 cut(s)	954
Eco130I	CCWWGG	3 cut(s)	135, 166, 1060
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	684
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	3 cut(s)	135, 166, 1060
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	3 cut(s)	135, 166, 1060
FaeI	CATG	1 cut(s)	640
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	1 cut(s)	636
FauI	CCCGC	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	69, 200, 1040
FokI	GGATG	4 cut(s)	20, 148, 258, 740
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	69, 200, 1040
FspBI	CTAG	2 cut(s)	474, 915
GlaI	GCGC	2 cut(s)	57, 980
GluI	GCNGC	3 cut(s)	69, 200, 1040
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	969
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	2 cut(s)	58, 981
Hin1II	CATG	1 cut(s)	640
Hin6I	GCGC	2 cut(s)	56, 979
HinP1I	GCGC	2 cut(s)	56, 979
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	2 cut(s)	319, 469
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	46, 269, 643, 1090
Hpy188I	TCNGA	3 cut(s)	159, 496, 584
Hpy188III	TCNNGA	5 cut(s)	182, 283, 295, 561, 816
Hpy8I	GTNNAC	4 cut(s)	46, 269, 643, 1090
HpyAV	CCTTC	6 cut(s)	73, 82, 86, 647, 787, 1018
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4IV	ACGT	2 cut(s)	486, 1071
HpyCH4V	TGCA	6 cut(s)	208, 343, 530, 578, 1010, 1039
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 205, 936, 1016
HpyF3I	CTNAG	5 cut(s)	60, 366, 495, 581, 612
HpySE526I	ACGT	2 cut(s)	486, 1071
Hsp92II	CATG	1 cut(s)	640
HspAI	GCGC	2 cut(s)	56, 979
Kzo9I	GATC	3 cut(s)	499, 751, 1000
LmnI	GCTCC	2 cut(s)	686, 772
LpnPI	CCDG	9 cut(s)	17, 44, 106, 230, 288, 296, 474, 675, 885
Lsp1109I	GCAGC	2 cut(s)	186, 1051
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	474, 915
MaeII	ACGT	2 cut(s)	486, 1071
MaeIII	GTNAC	3 cut(s)	219, 370, 487
MalI	GATC	3 cut(s)	501, 753, 1002
MbiI	CCGCTC	1 cut(s)	733
MboI	GATC	3 cut(s)	499, 751, 1000
MboII	GAAGA	9 cut(s)	47, 349, 446, 677, 758, 890, 936, 945, 954
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	3 cut(s)	258, 739, 769
MluCI	AATT	6 cut(s)	16, 351, 525, 701, 844, 858
MmeI	TCCRAC	2 cut(s)	182, 705
MroXI	GAANNNNTTC	2 cut(s)	318, 468
MseI	TTAA	4 cut(s)	128, 714, 809, 861
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	131, 205, 936, 1016
NdeII	GATC	3 cut(s)	499, 751, 1000
NlaIII	CATG	1 cut(s)	640
NlaIV	GGNNCC	2 cut(s)	28, 968
NmuCI	GTSAC	2 cut(s)	219, 487
PdmI	GAANNNNTTC	2 cut(s)	318, 468
PfeI	GAWTC	2 cut(s)	319, 469
PkrI	GCNGC	3 cut(s)	70, 201, 1041
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	28, 968
PspPI	GGNCC	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	2 cut(s)	347, 1089
RsaNI	GTAC	2 cut(s)	346, 1088
SaqAI	TTAA	4 cut(s)	128, 714, 809, 861
SatI	GCNGC	3 cut(s)	69, 200, 1040
Sau3AI	GATC	3 cut(s)	499, 751, 1000
Sau96I	GGNCC	1 cut(s)	967
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	3 cut(s)	258, 739, 769
SfaNI	GCATC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	6 cut(s)	16, 351, 525, 701, 844, 858
SsiI	CCGC	5 cut(s)	68, 375, 733, 930, 939
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	474, 915
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	3 cut(s)	135, 166, 1060
TaaI	ACNGT	1 cut(s)	609
TaiI	ACGT	2 cut(s)	489, 1074
TaqI	TCGA	2 cut(s)	294, 322
TasI	AATT	6 cut(s)	16, 351, 525, 701, 844, 858
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	319, 469
Tru1I	TTAA	4 cut(s)	128, 714, 809, 861
Tru9I	TTAA	4 cut(s)	128, 714, 809, 861
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	219, 487
TseI	GCWGC	2 cut(s)	199, 1039
Tsp45I	GTSAC	2 cut(s)	219, 487
TspDTI	ATGAA	2 cut(s)	101, 1034
TspGWI	ACGGA	1 cut(s)	754
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	16, 844
XmnI	GAANNNNTTC	2 cut(s)	318, 468
XspI	CTAG	2 cut(s)	474, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.