Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

2609996 .. 2613377

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATTCTTATGAGACGAAAGGCTTAAGTTTCGAATCCCCAAGCTTTATTGAATGGCTTAAACCTCAATCTTCTACTACTTCTTCTAAATCTGTGTTATATCGTGGGAAGACAAGAGATGCTATATCAAGATCAAATCACCACCAGAGTCAGATGAACATGTTGGAACGATCTCTATTCTTGTACCAACCACAAGAACCACTCAACACGTCTATTCAATGCTTGCCTCTTCTAAACAAGCTCATGGAAAATAATAGTCAAGCCTCGGATATCAAAGAAGAGAATAAGGATGATGTGGTTACCCTCCAAATCGGATTTCCTAAATACCACCGTGGTAGCTCGGAGGATGGCTCTGATATAACTTTCGATCATCAGAAGAAACCCATCAAGAGAGAGATAATAGAAGATGGTGTGGTGATGATGAAGAAGAGGAGGAAGATGAAGTTTGATGAGGAGATAATTGATTCTGATGTGGAAGTATGTGGGAAGAGGTTTTGGATACCAAGTCCGGCTCAGATTCATGTCGGTCCAATGCAATTTGCTTGCTCTATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGATCTGAGTTCAGAAAAGGGGCTGACTCGTTGAAAGGCACAATCCAACCGGCAGCCATCCTGCGGCTGCCATGCTATTGCTGTGCCGAGGGATGCAAGAACAACATCAACCATCCGCGGTCCAAGCCCCTGAAAGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGCTCCAAGCCCTTTTCTTGCGGAAAATGTGGCAAAGCCTTGGCTGTGAAAGGCGACTGGAGGACCCATGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAGCATAAGAGGTCTCTCAAGGACCACATTAGGTCCTTTGGCAGTGGACATTCTCCTCACCCGTCTCTTTTGTTTGACGGTTTTGAGGAGGATACAGAATGCGTCACCACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

337

Amino Acids

38.6

Weight (kDa)

9.02

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	227 - 261	6.4e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	264 - 288	7.3e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	724
AciI	CCGC	5 cut(s)	670, 722, 724, 801, 861
AclWI	GGATC	2 cut(s)	616, 895
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	740
AdeI	CACNNNGTG	1 cut(s)	1011
AfaI	GTAC	4 cut(s)	185, 575, 751, 880
AfiI	CCNNNNNNNGG	1 cut(s)	669
AflII	CTTAAG	1 cut(s)	25
AflIII	ACRYGT	3 cut(s)	159, 207, 881
AgsI	TTSAA	5 cut(s)	53, 218, 568, 640, 898
AjiI	CACGTC	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	4 cut(s)	45, 241, 339, 868
AluI	AGCT	4 cut(s)	45, 241, 339, 868
Alw26I	GTCTC	3 cut(s)	8, 915, 966
AlwI	GGATC	2 cut(s)	616, 895
ApeKI	GCWGC	3 cut(s)	555, 659, 673
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	743
AspS9I	GGNCC	5 cut(s)	527, 726, 843, 919, 930
AsuHPI	GGTGA	4 cut(s)	131, 427, 947, 994
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	5 cut(s)	527, 726, 843, 919, 930
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	567, 660, 671
BccI	CCATC	5 cut(s)	341, 392, 401, 671, 726
BciVI	GTATCC	2 cut(s)	492, 982
BcoDI	GTCTC	3 cut(s)	8, 915, 966
BfrI	CTTAAG	1 cut(s)	25
BfuI	GTATCC	2 cut(s)	492, 982
BisI	GCNGC	4 cut(s)	556, 660, 671, 674
BlsI	GCNGC	4 cut(s)	557, 661, 672, 675
Bme18I	GGWCC	5 cut(s)	527, 726, 843, 919, 930
BmgBI	CACGTC	1 cut(s)	210
BmgT120I	GGNCC	5 cut(s)	527, 726, 843, 919, 930
BmiI	GGNNCC	2 cut(s)	784, 845
BmsI	GCATC	3 cut(s)	109, 579, 689
BpiI	GAAGAC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	859
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	899
BsaI	GGTCTC	1 cut(s)	915
BsaJI	CCNNGG	5 cut(s)	264, 331, 693, 722, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	669
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	842
BseDI	CCNNGG	5 cut(s)	264, 331, 693, 722, 819
BseGI	GGATG	5 cut(s)	295, 352, 663, 704, 718
BseLI	CCNNNNNNNGG	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	527, 603
BseNI	ACTGG	1 cut(s)	842
BseRI	GAGGAG	4 cut(s)	445, 467, 942, 998
BseXI	GCAGC	3 cut(s)	567, 660, 671
Bsh1236I	CGCG	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	509, 656
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	669
BsmAI	GTCTC	3 cut(s)	8, 915, 966
BsmBI	CGTCTC	2 cut(s)	8, 966
BsmFI	GGGAC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	1001
Bso31I	GGTCTC	1 cut(s)	915
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	878
Bsp143I	GATC	5 cut(s)	131, 170, 367, 608, 887
BspACI	CCGC	5 cut(s)	670, 722, 724, 801, 861
BspCNI	CTCAG	2 cut(s)	526, 604
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	784, 845
BspPI	GGATC	2 cut(s)	616, 895
BspT104I	TTCGAA	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	915
BsrFI	RCCGGY	1 cut(s)	655
BsrGI	TGTACA	1 cut(s)	878
BsrI	ACTGG	1 cut(s)	842
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	5 cut(s)	264, 331, 693, 722, 819
BssMI	GATC	5 cut(s)	131, 170, 367, 608, 887
BssT1I	CCWWGG	1 cut(s)	819
Bst4CI	ACNGT	2 cut(s)	332, 977
Bst6I	CTCTTC	4 cut(s)	234, 273, 422, 482
BstAFI	CTTAAG	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	878
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	224, 544
BstDEI	CTNAG	2 cut(s)	513, 612
BstDSI	CCRYGG	2 cut(s)	331, 722
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	5 cut(s)	295, 352, 663, 704, 718
BstFNI	CGCG	1 cut(s)	724
BstKTI	GATC	5 cut(s)	134, 173, 370, 611, 890
BstMAI	GTCTC	3 cut(s)	8, 915, 966
BstMBI	GATC	5 cut(s)	131, 170, 367, 608, 887
BstMWI	GCNNNNNNNGC	2 cut(s)	552, 730
BstNSI	RCATGY	3 cut(s)	163, 586, 885
BstPI	GGTNACC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	567, 660, 671
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuI	GTATCC	2 cut(s)	492, 982
BtgI	CCRYGG	2 cut(s)	331, 722
BtrI	CACGTC	1 cut(s)	210
BtsCI	GGATG	5 cut(s)	295, 352, 663, 704, 718
BtsI	GCAGTG	1 cut(s)	946
BtsIMutI	CAGTG	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	224, 544
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	5 cut(s)	527, 726, 843, 919, 930
Cfr42I	CCGCGG	1 cut(s)	725
CseI	GACGC	1 cut(s)	988
Csp6I	GTAC	4 cut(s)	184, 574, 750, 879
CviAII	CATG	9 cut(s)	160, 244, 521, 583, 605, 678, 779, 848, 882
CviQI	GTAC	4 cut(s)	184, 574, 750, 879
DdeI	CTNAG	2 cut(s)	513, 612
DpnI	GATC	5 cut(s)	133, 172, 369, 610, 889
DpnII	GATC	5 cut(s)	131, 170, 367, 608, 887
DraIII	CACNNNGTG	1 cut(s)	1011
Eam1104I	CTCTTC	4 cut(s)	234, 273, 422, 482
EarI	CTCTTC	4 cut(s)	234, 273, 422, 482
Eco130I	CCWWGG	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	915
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	5 cut(s)	527, 726, 843, 919, 930
Eco57I	CTGAAG	1 cut(s)	740
Eco91I	GGTNACC	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	843, 930
EcoO65I	GGTNACC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	819
EcoT22I	ATGCAT	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	819
Esp3I	CGTCTC	2 cut(s)	8, 966
FaeI	CATG	9 cut(s)	163, 247, 524, 586, 608, 681, 782, 851, 885
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	9 cut(s)	159, 243, 520, 582, 604, 677, 778, 847, 881
FauNDI	CATATG	1 cut(s)	594
Fnu4HI	GCNGC	4 cut(s)	556, 660, 671, 674
FokI	GGATG	5 cut(s)	302, 359, 650, 705, 711
Fsp4HI	GCNGC	4 cut(s)	556, 660, 671, 674
GluI	GCNGC	4 cut(s)	556, 660, 671, 674
GsuI	CTGGAG	1 cut(s)	859
HapII	CCGG	2 cut(s)	509, 656
HgaI	GACGC	1 cut(s)	988
Hin1II	CATG	9 cut(s)	163, 247, 524, 586, 608, 681, 782, 851, 885
HindIII	AAGCTT	2 cut(s)	43, 866
HinfI	GANTC	5 cut(s)	35, 148, 464, 517, 632
HpaII	CCGG	2 cut(s)	509, 656
HphI	GGTGA	4 cut(s)	131, 427, 947, 994
Hpy166II	GTNNAC	2 cut(s)	752, 944
Hpy188III	TCNNGA	2 cut(s)	129, 388
Hpy8I	GTNNAC	2 cut(s)	752, 944
HpyCH4III	ACNGT	2 cut(s)	332, 977
HpyCH4IV	ACGT	2 cut(s)	209, 772
HpyCH4V	TGCA	5 cut(s)	535, 555, 586, 592, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	552, 730
HpyF3I	CTNAG	2 cut(s)	513, 612
HpySE526I	ACGT	2 cut(s)	209, 772
Hsp92II	CATG	9 cut(s)	163, 247, 524, 586, 608, 681, 782, 851, 885
KspI	CCGCGG	1 cut(s)	725
Kzo9I	GATC	5 cut(s)	131, 170, 367, 608, 887
LmnI	GCTCC	1 cut(s)	788
LpnPI	CCDG	6 cut(s)	158, 522, 669, 680, 749, 823
Lsp1109I	GCAGC	3 cut(s)	567, 660, 671
LweI	GCATC	3 cut(s)	109, 579, 689
MaeII	ACGT	2 cut(s)	209, 772
MaeIII	GTNAC	2 cut(s)	298, 1000
MalI	GATC	5 cut(s)	133, 172, 369, 610, 889
MboI	GATC	5 cut(s)	131, 170, 367, 608, 887
MflI	RGATCY	1 cut(s)	608
MluCI	AATT	3 cut(s)	4, 459, 536
MlyI	GAGTC	2 cut(s)	157, 626
MmeI	TCCRAC	2 cut(s)	144, 676
Mph1103I	ATGCAT	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	2 cut(s)	26, 60
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	724
MspCI	CTTAAG	1 cut(s)	25
MspI	CCGG	2 cut(s)	509, 656
Mva1269I	GAATGC	1 cut(s)	1001
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	2 cut(s)	552, 730
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	5 cut(s)	131, 170, 367, 608, 887
NlaIII	CATG	9 cut(s)	163, 247, 524, 586, 608, 681, 782, 851, 885
NlaIV	GGNNCC	2 cut(s)	784, 845
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	1 cut(s)	1000
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	3 cut(s)	163, 586, 885
NspV	TTCGAA	1 cut(s)	33
PciI	ACATGT	2 cut(s)	159, 881
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	35, 464, 517
PkrI	GCNGC	4 cut(s)	557, 661, 672, 675
PleI	GAGTC	2 cut(s)	156, 626
PpsI	GAGTC	2 cut(s)	156, 626
PpuMI	RGGWCCY	2 cut(s)	843, 930
PscI	ACATGT	2 cut(s)	159, 881
Psp5II	RGGWCCY	2 cut(s)	843, 930
PspEI	GGTNACC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	784, 845
PspPI	GGNCC	5 cut(s)	527, 726, 843, 919, 930
PspPPI	RGGWCCY	2 cut(s)	843, 930
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	4 cut(s)	185, 575, 751, 880
RsaNI	GTAC	4 cut(s)	184, 574, 750, 879
RseI	CAYNNNNRTG	1 cut(s)	587
SacII	CCGCGG	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	26, 60
SatI	GCNGC	4 cut(s)	556, 660, 671, 674
Sau3AI	GATC	5 cut(s)	131, 170, 367, 608, 887
Sau96I	GGNCC	5 cut(s)	527, 726, 843, 919, 930
SchI	GAGTC	2 cut(s)	157, 626
SfaNI	GCATC	3 cut(s)	109, 579, 689
Sfr303I	CCGCGG	1 cut(s)	725
SfuI	TTCGAA	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	725
SinI	GGWCC	5 cut(s)	527, 726, 843, 919, 930
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	2 cut(s)	25, 914
SmoI	CTYRAG	2 cut(s)	25, 914
Sse9I	AATT	3 cut(s)	4, 459, 536
SsiI	CCGC	5 cut(s)	670, 722, 724, 801, 861
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	2 cut(s)	332, 977
TaiI	ACGT	2 cut(s)	212, 775
TaqI	TCGA	2 cut(s)	33, 366
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	3 cut(s)	4, 459, 536
TatI	WGTACW	1 cut(s)	878
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	3 cut(s)	35, 464, 517
Tru1I	TTAA	2 cut(s)	26, 60
Tru9I	TTAA	2 cut(s)	26, 60
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	3 cut(s)	555, 659, 673
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	5 cut(s)	17, 170, 437, 455, 509
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	1 cut(s)	946
Vha464I	CTTAAG	1 cut(s)	25
VpaK11BI	GGWCC	5 cut(s)	527, 726, 843, 919, 930
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	3 cut(s)	163, 586, 885
XmnI	GAANNNNTTC	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.