Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

39410998 .. 39413450

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTTATGGAATAACCAGCACCAGGTGGAAGACTACAGAAATTTGTGTGTTCAAGCTGCACCGCCTTTTATCGAATGGCTCAAACCATCAGCGTCGTCCTCTTTTGCTTCATCACTGTCTTCATCATCATTGACGTCTTTTTGTTCGTTGGACGACCAAAACAGTAGTACTCTGCAATGCTTGCCTCTTTTAAGCAGGTTTACCGATACAAAGCCGGTGAAAAGAGAAGATATTGGGGTACAGAGAGAGGGTTTCGGAGTGAAAGAAGAGCAGATAGAGAAGGTTACAGTGGCACTGCACATTGGACTGCCTAATAGCACAACTGCCGATGATGAGAAGAAGGTTTTGGATGATGTCAAGGAAGAAGACGTAGTACTACCAATAACCAAGAATAGATTTAACGCCAATGGATGCTCTGCGACAGAGAGTAGGTTTTGGATACCGACGCCTGCTCAGATTCTTGTTGGGCCGATGCAGTTTGCTTGTTCCATTTGCAGCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGCCACGGATCTGAATTTAGGAAAGGGCCAGATTCTCTAAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTACTGTTGTGCTCAGGGCTGCAAGAACAATATCAACCATCCAAGAGCCAAGCCACTCAAAGACTTCAGAACTCTCCAAACTCACTACAAGAGAAAGCATGGAGCAAAGCCATTTATGTGCAGAAAATGCGGCAAAACATTTGCAGTCAAAGGTGATTGGAGAACACATGAAAAGAACTGCGGCAAGTTGTGGTATTGCAGCTGTGGATCGGATTTCAAACACAAAAGATCGCTCAAAGACCACATCAGGTCCTTCGGAAAAGGGCATTCTCCACGTCCTTGTGTCGATGGTTTTCATGAGGATGATCAGAAGGAATGCATTACTGGTTCTGAGGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

320

Amino Acids

36.12

Weight (kDa)

8.76

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	207 - 241	4.5e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	244 - 268	6.8e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	189
AciI	CCGC	4 cut(s)	65, 600, 750, 801
AclWI	GGATC	2 cut(s)	559, 835
AcsI	RAATTY	2 cut(s)	43, 557
AcuI	CTGAAG	1 cut(s)	670
AcyI	GRCGYC	2 cut(s)	137, 449
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	3 cut(s)	172, 243, 378
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	56, 511, 838
AjiI	CACGTC	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	2 cut(s)	59, 822
AluI	AGCT	2 cut(s)	59, 822
Alw21I	GWGCWC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	559, 835
AoxI	GGCC	3 cut(s)	470, 544, 569
ApeKI	GCWGC	4 cut(s)	59, 498, 639, 819
ApoI	RAATTY	2 cut(s)	43, 557
AspS9I	GGNCC	4 cut(s)	470, 544, 569, 870
AsuHPI	GGTGA	2 cut(s)	232, 785
AvaII	GGWCC	1 cut(s)	870
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BbsI	GAAGAC	3 cut(s)	39, 114, 375
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	46, 510, 626, 831
BccI	CCATC	3 cut(s)	97, 666, 902
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	925
BfmI	CTRYAG	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
BlsI	GCNGC	7 cut(s)	61, 500, 601, 641, 752, 803, 821
BmcAI	AGTACT	2 cut(s)	172, 378
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	870
BmgBI	CACGTC	1 cut(s)	896
BmgT120I	GGNCC	4 cut(s)	470, 544, 569, 870
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	404, 465, 522
BpiI	GAAGAC	3 cut(s)	39, 114, 375
Bpu10I	CCTNAGC	2 cut(s)	608, 633
BsaHI	GRCGYC	2 cut(s)	137, 449
BsaJI	CCNNGG	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	2 cut(s)	185, 609
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	5 cut(s)	358, 419, 658, 928, 961
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	185, 609
BseMII	CTCAG	4 cut(s)	470, 599, 647, 942
BseNI	ACTGG	1 cut(s)	949
BseXI	GCAGC	4 cut(s)	46, 510, 626, 831
BsgI	GTGCAG	3 cut(s)	45, 284, 760
BshFI	GGCC	3 cut(s)	472, 546, 571
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	2 cut(s)	886, 941
BsnI	GGCC	3 cut(s)	472, 546, 571
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	4 cut(s)	551, 827, 848, 925
BspACI	CCGC	4 cut(s)	65, 600, 750, 801
BspANI	GGCC	3 cut(s)	472, 546, 571
BspCNI	CTCAG	4 cut(s)	469, 600, 646, 943
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	545
BspMI	ACCTGC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	559, 835
BspQI	GCTCTTC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	185, 609
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	949
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	4 cut(s)	551, 827, 848, 925
BssNI	GRCGYC	2 cut(s)	137, 449
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	4 cut(s)	120, 167, 292, 626
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	2 cut(s)	137, 449
BstAPI	GCANNNNNTGC	2 cut(s)	184, 747
BstC8I	GCNNGC	2 cut(s)	185, 453
BstDEI	CTNAG	4 cut(s)	456, 608, 633, 951
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	5 cut(s)	358, 419, 658, 928, 961
BstKTI	GATC	4 cut(s)	554, 830, 851, 928
BstMBI	GATC	4 cut(s)	551, 827, 848, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 747
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	46, 510, 626, 831
BstV2I	GAAGAC	3 cut(s)	39, 114, 375
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	472, 546, 571
BtgI	CCRYGG	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	896
BtsCI	GGATG	5 cut(s)	358, 419, 658, 928, 961
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	116, 296, 297
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	185, 453
CciI	TCATGA	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	470, 544, 569, 870
CseI	GACGC	2 cut(s)	84, 457
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	171, 242, 377
CviAII	CATG	5 cut(s)	526, 618, 719, 788, 917
CviQI	GTAC	3 cut(s)	171, 242, 377
DdeI	CTNAG	4 cut(s)	456, 608, 633, 951
DpnI	GATC	4 cut(s)	553, 829, 850, 927
DpnII	GATC	4 cut(s)	551, 827, 848, 925
DraIII	CACNNNGTG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	870
EcoRII	CCWGG	1 cut(s)	24
EcoT22I	ATGCAT	2 cut(s)	537, 941
FaeI	CATG	5 cut(s)	529, 621, 722, 791, 920
FaiI	YATR	9 cut(s)	10, 527, 537, 539, 619, 720, 737, 789, 918
FatI	CATG	5 cut(s)	525, 617, 718, 787, 916
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
FokI	GGATG	4 cut(s)	365, 426, 645, 935
Fsp4HI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
GluI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
HaeIII	GGCC	3 cut(s)	472, 546, 571
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	2 cut(s)	84, 457
Hin1I	GRCGYC	2 cut(s)	137, 449
Hin1II	CATG	5 cut(s)	529, 621, 722, 791, 920
HinfI	GANTC	2 cut(s)	460, 575
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	232, 785
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	8 cut(s)	260, 459, 556, 689, 832, 878, 930, 952
Hpy188III	TCNNGA	1 cut(s)	917
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	100, 451
HpyAV	CCTTC	5 cut(s)	277, 337, 517, 883, 925
HpyCH4III	ACNGT	4 cut(s)	120, 167, 292, 626
HpyCH4IV	ACGT	3 cut(s)	137, 372, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 747
HpyF3I	CTNAG	4 cut(s)	456, 608, 633, 951
HpySE526I	ACGT	3 cut(s)	137, 372, 895
Hsp92I	GRCGYC	2 cut(s)	137, 449
Hsp92II	CATG	5 cut(s)	529, 621, 722, 791, 920
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	4 cut(s)	551, 827, 848, 925
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	4 cut(s)	46, 510, 626, 831
LweI	GCATC	3 cut(s)	404, 465, 522
MabI	ACCWGGT	1 cut(s)	24
MaeII	ACGT	3 cut(s)	137, 372, 895
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	553, 829, 850, 927
MboI	GATC	4 cut(s)	551, 827, 848, 925
MboII	GAAGA	7 cut(s)	44, 114, 242, 281, 352, 377, 380
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	2 cut(s)	43, 557
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	112, 198, 244, 603, 913, 946
Mph1103I	ATGCAT	2 cut(s)	537, 941
MseI	TTAA	2 cut(s)	194, 402
MslI	CAYNNNNRTG	3 cut(s)	530, 736, 921
MspA1I	CMGCKG	1 cut(s)	822
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	886, 941
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	184, 747
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	4 cut(s)	551, 827, 848, 925
NlaIII	CATG	5 cut(s)	529, 621, 722, 791, 920
NlaIV	GGNNCC	1 cut(s)	545
NsiI	ATGCAT	2 cut(s)	537, 941
NspI	RCATGY	1 cut(s)	529
PagI	TCATGA	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	264
PctI	GAATGC	2 cut(s)	886, 941
PfeI	GAWTC	2 cut(s)	460, 575
PkrI	GCNGC	7 cut(s)	61, 500, 601, 641, 752, 803, 821
PpuMI	RGGWCCY	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	4 cut(s)	470, 544, 569, 870
PspPPI	RGGWCCY	1 cut(s)	870
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	822
RsaI	GTAC	3 cut(s)	172, 243, 378
RsaNI	GTAC	3 cut(s)	171, 242, 377
RseI	CAYNNNNRTG	3 cut(s)	530, 736, 921
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	194, 402
SatI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
Sau3AI	GATC	4 cut(s)	551, 827, 848, 925
Sau96I	GGNCC	4 cut(s)	470, 544, 569, 870
ScaI	AGTACT	2 cut(s)	172, 378
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	634
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	404, 465, 522
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	3 cut(s)	530, 736, 921
Sse9I	AATT	2 cut(s)	43, 557
SsiI	CCGC	4 cut(s)	65, 600, 750, 801
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	120, 167, 292, 626
TaiI	ACGT	3 cut(s)	140, 375, 898
TaqI	TCGA	2 cut(s)	75, 906
TasI	AATT	2 cut(s)	43, 557
TatI	WGTACW	2 cut(s)	170, 376
TauI	GCSGC	3 cut(s)	602, 753, 804
TfiI	GAWTC	2 cut(s)	460, 575
Tru1I	TTAA	2 cut(s)	194, 402
Tru9I	TTAA	2 cut(s)	194, 402
TscAI	CASTG	3 cut(s)	123, 297, 303
TseI	GCWGC	4 cut(s)	59, 498, 639, 819
TspDTI	ATGAA	4 cut(s)	102, 114, 804, 905
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	3 cut(s)	123, 297, 303
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	2 cut(s)	43, 557
XceI	RCATGY	1 cut(s)	529
ZraI	GACGTC	1 cut(s)	138
ZrmI	AGTACT	2 cut(s)	172, 378
Zsp2I	ATGCAT	2 cut(s)	537, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.