Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

16469687 .. 16472939

Gene Structure 3253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1163100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTTTATTGAACCATCATGTTGAAGACCAAAATTTGTGCTTTCAAGCACCTCCTTTTATTGAATGGCTGAAGCCACCTTCCTCTTTTTCATCATCGTCATCATCATCATCATCTTCCTTTTGCGTATCTGAGGATAGCACTATGCAATGCTTGCCTCTTTTAAGCCGGTTTACGGACACCAAGCCTGTGAAAATAGAAGATGCTGGGGTGCAGAAAGAAGGTTATGGGGTCAAAGAAGAGCAGATGGAGAAAGTTACAGTTGCCTTGCACATTGGACCGCCTAATAGTTCTAGTACTACTACAGGTGTTTACTCAGACACATATGATGAGAATAAGAAGGTTTTGAATCTCAAGGAAGAACAAGTAGTCATGAAAAAGAGCTTTCTTGGGTGTTCTTTTAACGCAGAAAGTAGGTTTTGGATACCAACGCCTGCTCAGATTCTTGTCGGGCCGATGCAATTTGCTTGCTCCATTTGCAGCAAGACCTTCAATAGGTACAATAACATGCAGATGCATATGTGGGGCCATGGATCTGAATATAGAAAAGGGCCAGATTCTCTAAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTATTGTTGTGCTCAAGGCTGCAAGAACAACATTAACCACCCAAGAGCCAAGCCACTCAAAGACTTCAGAACTCTCCAAACTCACTACAAGAGAAAGCACGGAGCAAAGCCATTCATGTGTAGAAAATGTGCCAAAACATTTGCAGTTAAAGGAGATTGGAGAACCCATGAAAAGAACTGTGGCAAGCTATGGTATTGCACTTGCGGATCTGATTTTAAACACAAAAGATCTCTCAAGGACCATATTAGATCCTTTGGTAAGGGACATTCTCCGCACCCGTCTCTTGAGGGTTTTCACGAGGATGAGAAGGAATGCGTAACTGGTTCGGAAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

314

Amino Acids

35.35

Weight (kDa)

8.77

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	201 - 235	4.3e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	238 - 262	1.8e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	281, 582, 807, 875
AclWI	GGATC	3 cut(s)	541, 817, 846
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	92, 652
AfaI	GTAC	2 cut(s)	298, 500
AfiI	CCNNNNNNNGG	2 cut(s)	175, 495
AgsI	TTSAA	6 cut(s)	13, 26, 47, 65, 349, 493
AluBI	AGCT	2 cut(s)	384, 790
AluI	AGCT	2 cut(s)	384, 790
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	888
AlwI	GGATC	3 cut(s)	541, 817, 846
AoxI	GGCC	3 cut(s)	452, 526, 551
ApeKI	GCWGC	2 cut(s)	480, 621
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	5 cut(s)	278, 452, 526, 551, 841
AvaII	GGWCC	2 cut(s)	278, 841
BauI	CACGAG	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	616
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	492, 608
BccI	CCATC	2 cut(s)	24, 241
BciVI	GTATCC	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	888
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	417
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	3 cut(s)	481, 582, 622
BlsI	GCNGC	3 cut(s)	482, 583, 623
BmcAI	AGTACT	1 cut(s)	298
Bme18I	GGWCC	2 cut(s)	278, 841
BmgT120I	GGNCC	5 cut(s)	278, 452, 526, 551, 841
BmiI	GGNNCC	1 cut(s)	527
BmsI	GCATC	3 cut(s)	193, 447, 504
BpiI	GAAGAC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	4 cut(s)	338, 600, 821, 908
BsaJI	CCNNGG	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 495
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	928
Bse3DI	GCAATG	2 cut(s)	155, 591
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	1 cut(s)	910
BseLI	CCNNNNNNNGG	2 cut(s)	175, 495
BseMI	GCAATG	2 cut(s)	155, 591
BseMII	CTCAG	4 cut(s)	123, 330, 452, 581
BseNI	ACTGG	1 cut(s)	928
BseXI	GCAGC	2 cut(s)	492, 608
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	454, 528, 553
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	2 cut(s)	175, 495
BsmAI	GTCTC	1 cut(s)	888
BsmBI	CGTCTC	1 cut(s)	888
BsmFI	GGGAC	1 cut(s)	879
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	3 cut(s)	454, 528, 553
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	533, 809, 830, 851
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	4 cut(s)	281, 582, 807, 875
BspANI	GGCC	3 cut(s)	454, 528, 553
BspCNI	CTCAG	4 cut(s)	124, 329, 451, 582
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	527
BspPI	GGATC	3 cut(s)	541, 817, 846
BspQI	GCTCTTC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	155, 591
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	928
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	4 cut(s)	533, 809, 830, 851
BssSI	CACGAG	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	529
Bst2BI	CACGAG	1 cut(s)	899
Bst4CI	ACNGT	2 cut(s)	262, 782
Bst6I	CTCTTC	2 cut(s)	234, 927
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	4 cut(s)	155, 435, 469, 788
BstDEI	CTNAG	4 cut(s)	132, 316, 438, 590
BstDSI	CCRYGG	1 cut(s)	529
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	910
BstKTI	GATC	4 cut(s)	536, 812, 833, 854
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	4 cut(s)	533, 809, 830, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 477
BstNSI	RCATGY	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	492, 608
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	4 cut(s)	533, 809, 830, 851
BstYI	RGATCY	4 cut(s)	533, 809, 830, 851
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	454, 528, 553
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	910
Cac8I	GCNNGC	4 cut(s)	155, 435, 469, 788
CciI	TCATGA	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	5 cut(s)	278, 452, 526, 551, 841
Csp6I	GTAC	2 cut(s)	297, 499
CviAII	CATG	7 cut(s)	20, 373, 508, 530, 600, 718, 770
CviQI	GTAC	2 cut(s)	297, 499
DdeI	CTNAG	4 cut(s)	132, 316, 438, 590
DpnI	GATC	4 cut(s)	535, 811, 832, 853
DpnII	GATC	4 cut(s)	533, 809, 830, 851
DraI	TTTAAA	1 cut(s)	820
Eam1104I	CTCTTC	2 cut(s)	234, 927
EarI	CTCTTC	2 cut(s)	234, 927
Eco130I	CCWWGG	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	278, 841
Eco57I	CTGAAG	2 cut(s)	92, 652
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	7 cut(s)	23, 376, 511, 533, 603, 721, 773
FaqI	GGGAC	1 cut(s)	879
FatI	CATG	7 cut(s)	19, 372, 507, 529, 599, 717, 769
FauNDI	CATATG	2 cut(s)	325, 519
Fnu4HI	GCNGC	3 cut(s)	481, 582, 622
FokI	GGATG	1 cut(s)	917
Fsp4HI	GCNGC	3 cut(s)	481, 582, 622
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	481, 582, 622
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	454, 528, 553
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	7 cut(s)	23, 376, 511, 533, 603, 721, 773
HinfI	GANTC	3 cut(s)	349, 442, 557
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	174, 313
Hpy188I	TCNGA	7 cut(s)	133, 319, 441, 538, 671, 814, 931
Hpy188III	TCNNGA	3 cut(s)	373, 887, 899
Hpy8I	GTNNAC	2 cut(s)	174, 313
HpyAV	CCTTC	5 cut(s)	90, 215, 334, 499, 904
HpyCH4III	ACNGT	2 cut(s)	262, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 477
HpyF3I	CTNAG	4 cut(s)	132, 316, 438, 590
Hsp92II	CATG	7 cut(s)	23, 376, 511, 533, 603, 721, 773
Kzo9I	GATC	4 cut(s)	533, 809, 830, 851
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	476, 704
LpnPI	CCDG	8 cut(s)	182, 192, 201, 291, 447, 567, 591, 909
Lsp1109I	GCAGC	2 cut(s)	492, 608
LweI	GCATC	3 cut(s)	193, 447, 504
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	256, 919
MalI	GATC	4 cut(s)	535, 811, 832, 853
MboI	GATC	4 cut(s)	533, 809, 830, 851
MboII	GAAGA	5 cut(s)	38, 108, 212, 251, 371
MflI	RGATCY	4 cut(s)	533, 809, 830, 851
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	2 cut(s)	34, 461
MnlI	CCTC	8 cut(s)	63, 94, 127, 168, 585, 883, 895, 928
Mph1103I	ATGCAT	1 cut(s)	519
MseI	TTAA	5 cut(s)	164, 402, 636, 750, 819
MslI	CAYNNNNRTG	3 cut(s)	512, 718, 903
MspI	CCGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	920
MwoI	GCNNNNNNNGC	2 cut(s)	154, 477
NcoI	CCATGG	1 cut(s)	529
NdeI	CATATG	2 cut(s)	325, 519
NdeII	GATC	4 cut(s)	533, 809, 830, 851
NlaIII	CATG	7 cut(s)	23, 376, 511, 533, 603, 721, 773
NlaIV	GGNNCC	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	234
PctI	GAATGC	1 cut(s)	920
PfeI	GAWTC	3 cut(s)	349, 442, 557
PkrI	GCNGC	3 cut(s)	482, 583, 623
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	5 cut(s)	278, 452, 526, 551, 841
PsuI	RGATCY	4 cut(s)	533, 809, 830, 851
RsaI	GTAC	2 cut(s)	298, 500
RsaNI	GTAC	2 cut(s)	297, 499
RseI	CAYNNNNRTG	3 cut(s)	512, 718, 903
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	164, 402, 636, 750, 819
SatI	GCNGC	3 cut(s)	481, 582, 622
Sau3AI	GATC	4 cut(s)	533, 809, 830, 851
Sau96I	GGNCC	5 cut(s)	278, 452, 526, 551, 841
ScaI	AGTACT	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	193, 447, 504
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	278, 841
SmiMI	CAYNNNNRTG	3 cut(s)	512, 718, 903
SmlI	CTYRAG	4 cut(s)	353, 615, 836, 887
SmoI	CTYRAG	4 cut(s)	353, 615, 836, 887
Sse9I	AATT	2 cut(s)	34, 461
SsiI	CCGC	4 cut(s)	281, 582, 807, 875
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	262, 782
TasI	AATT	2 cut(s)	34, 461
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	349, 442, 557
Tru1I	TTAA	5 cut(s)	164, 402, 636, 750, 819
Tru9I	TTAA	5 cut(s)	164, 402, 636, 750, 819
TseI	GCWGC	2 cut(s)	480, 621
TspDTI	ATGAA	4 cut(s)	81, 389, 706, 786
TspGWI	ACGGA	2 cut(s)	191, 717
VpaK11BI	GGWCC	2 cut(s)	278, 841
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.