Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

8474634 .. 8477720

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCAAGACAGAGAGAAAGGAGAGCATCAATTGAATTCGTCAGAGCTTCAAATGTGTTCGCCGAAAAAAAAGAAAGGTGTCTCGTTTTGTGAAGCTTTCCCACAAAAGGTCTGGATAAATTCTCTGAGGAGAGAATTAATCAAGGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCATCCCCCTCTACAGATGGGTTTATGGAACCATCATGTGGAAGACCAAAATTTGTGCTTTCAAGCACCTCCTTTTATTGAATGGCTGAAGCCATCTTCCTCTTTTTCATCATCATCAACATCATCATCGTCTTCCCCTTGTTTATCTGAGCATGGCACTATACAATGCTTGCCTCTTTTAAGCCAGTTTACGGATACCAAGCTGGTGAAAGTAGAAGATCGCGGGGTTCAGGAAGAGGGTTTTGGAGTCAAAGAAGAGCAGATGGAGAAAGTTACAGTTTCCTTGCACATTGGACTTCCTAATAGTACTAGTAGTACAGGTGATAAATCAGAAACATATGATGAAAATAAGAAGGTTTTGAATCTCAAGGAAGAACAAGTAGTCATGAAGAAGAGCATTCATGGTTGTTCGTTTAAGGCAGAAAGTAGGTTTTGGATACCAACGCCTGCTCAGGTTCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATTTGCAGCAAGACCTTCAATAGGTACAATAACATGCAGATGCATATGTGGGGCCACGGATCTGAATATAGAAAAGGGCCGGATTCTCTAAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTACTGTTGTGCTCAAGGCTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCACTCAAAGACTTCAGAACTCTCCAGACTCATTACAAGAGAAAGCACGGAGCAAAGCCATTCATGTGTAGAAAATGTGCCAAAACATTTGCAGTTAAAGGAGACTGGAGAACCCATGAAAAGAACTGTGGCAAGCTGTGGTATTGCACTTGTGGATCGGATTTTAAACACAAAAGATCACTCAAGGACCATATTAGATCATTTGGTAAGGGGCATTCTCCACACCCTTCTCTTGATGGTTTTCACGAGGATGAGAAGGAATGTGTAACTGGTTCGGAAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

380

Amino Acids

42.96

Weight (kDa)

8.89

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	1 cut(s)	408
AciI	CCGC	2 cut(s)	408, 780
AclWI	GGATC	2 cut(s)	739, 1015
AcsI	RAATTY	3 cut(s)	34, 118, 235
AcuI	CTGAAG	2 cut(s)	293, 850
AfaI	GTAC	3 cut(s)	493, 502, 698
AfiI	CCNNNNNNNGG	4 cut(s)	106, 223, 376, 693
AgsI	TTSAA	6 cut(s)	34, 50, 248, 266, 547, 691
AhlI	ACTAGT	1 cut(s)	494
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	5 cut(s)	46, 95, 148, 388, 988
AluI	AGCT	5 cut(s)	46, 95, 148, 388, 988
Alw21I	GWGCWC	2 cut(s)	150, 814
Alw26I	GTCTC	2 cut(s)	85, 948
AlwI	GGATC	2 cut(s)	739, 1015
AoxI	GGCC	3 cut(s)	650, 724, 749
ApeKI	GCWGC	2 cut(s)	678, 819
ApoI	RAATTY	3 cut(s)	34, 118, 235
AseI	ATTAAT	1 cut(s)	137
AspS9I	GGNCC	4 cut(s)	650, 724, 749, 1039
AsuHPI	GGTGA	2 cut(s)	403, 518
AvaII	GGWCC	1 cut(s)	1039
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	1097
BbsI	GAAGAC	2 cut(s)	234, 309
Bbv12I	GWGCWC	2 cut(s)	150, 814
BbvCI	CCTCAGC	1 cut(s)	788
BbvI	GCAGC	2 cut(s)	690, 806
BccI	CCATC	6 cut(s)	195, 196, 225, 286, 442, 1082
BciVI	GTATCC	2 cut(s)	373, 615
BcoDI	GTCTC	2 cut(s)	85, 948
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	197
BfuI	GTATCC	2 cut(s)	373, 615
BisI	GCNGC	3 cut(s)	679, 780, 820
BlsI	GCNGC	3 cut(s)	680, 781, 821
BmcAI	AGTACT	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	1039
BmgT120I	GGNCC	4 cut(s)	650, 724, 749, 1039
BmiI	GGNNCC	2 cut(s)	215, 725
BmsI	GCATC	3 cut(s)	34, 645, 702
BpiI	GAAGAC	2 cut(s)	234, 309
BpmI	CTGGAG	2 cut(s)	860, 979
Bpu10I	CCTNAGC	2 cut(s)	636, 788
BpuEI	CTTGAG	3 cut(s)	536, 798, 1019
BsaJI	CCNNGG	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 223, 376, 693
Bse1I	ACTGG	3 cut(s)	370, 962, 1126
Bse3DI	GCAATG	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	2 cut(s)	187, 1108
BseLI	CCNNNNNNNGG	4 cut(s)	106, 223, 376, 693
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	4 cut(s)	116, 324, 650, 779
BseNI	ACTGG	3 cut(s)	370, 962, 1126
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	690, 806
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	652, 726, 751
BsiHKAI	GWGCWC	2 cut(s)	150, 814
BsiSI	CCGG	1 cut(s)	752
BslI	CCNNNNNNNGG	4 cut(s)	106, 223, 376, 693
BsmAI	GTCTC	2 cut(s)	85, 948
BsmI	GAATGC	2 cut(s)	582, 1066
BsnI	GGCC	3 cut(s)	652, 726, 751
Bsp1286I	GDGCHC	2 cut(s)	150, 814
Bsp143I	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
BspACI	CCGC	2 cut(s)	408, 780
BspANI	GGCC	3 cut(s)	652, 726, 751
BspCNI	CTCAG	4 cut(s)	117, 325, 649, 780
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	215, 725
BspPI	GGATC	2 cut(s)	739, 1015
BspQI	GCTCTTC	2 cut(s)	435, 572
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	3 cut(s)	370, 962, 1126
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
BssSI	CACGAG	1 cut(s)	1097
Bst2BI	CACGAG	1 cut(s)	1097
Bst4CI	ACNGT	3 cut(s)	463, 806, 980
Bst6I	CTCTTC	4 cut(s)	414, 435, 572, 1125
BstC8I	GCNNGC	4 cut(s)	356, 633, 667, 986
BstDEI	CTNAG	4 cut(s)	125, 333, 636, 788
BstDSI	CCRYGG	1 cut(s)	727
BstENI	CCTNNNNNAGG	1 cut(s)	691
BstF5I	GGATG	2 cut(s)	187, 1108
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	5 cut(s)	406, 734, 1010, 1031, 1052
BstMAI	GTCTC	2 cut(s)	85, 948
BstMBI	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
BstMWI	GCNNNNNNNGC	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	690, 806
BstV2I	GAAGAC	2 cut(s)	234, 309
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BsuI	GTATCC	2 cut(s)	373, 615
BsuRI	GGCC	3 cut(s)	652, 726, 751
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	2 cut(s)	187, 1108
Cac8I	GCNNGC	4 cut(s)	356, 633, 667, 986
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	4 cut(s)	650, 724, 749, 1039
Csp6I	GTAC	3 cut(s)	492, 501, 697
CviAII	CATG	8 cut(s)	221, 338, 571, 587, 706, 798, 916, 968
CviQI	GTAC	3 cut(s)	492, 501, 697
DdeI	CTNAG	4 cut(s)	125, 333, 636, 788
DpnI	GATC	5 cut(s)	405, 733, 1009, 1030, 1051
DpnII	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
DraI	TTTAAA	1 cut(s)	1018
Eam1104I	CTCTTC	4 cut(s)	414, 435, 572, 1125
EarI	CTCTTC	4 cut(s)	414, 435, 572, 1125
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	1039
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	293, 850
EcoICRI	GAGCTC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	8 cut(s)	224, 341, 574, 590, 709, 801, 919, 971
FatI	CATG	8 cut(s)	220, 337, 570, 586, 705, 797, 915, 967
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	2 cut(s)	523, 717
Fnu4HI	GCNGC	3 cut(s)	679, 780, 820
FokI	GGATG	2 cut(s)	174, 1115
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	679, 780, 820
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	3 cut(s)	679, 780, 820
GsuI	CTGGAG	2 cut(s)	860, 979
HaeIII	GGCC	3 cut(s)	652, 726, 751
HapII	CCGG	1 cut(s)	752
Hin1II	CATG	8 cut(s)	224, 341, 574, 590, 709, 801, 919, 971
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	432, 547, 755, 880
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	2 cut(s)	403, 518
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	8 cut(s)	43, 126, 334, 517, 736, 869, 1012, 1129
Hpy188III	TCNNGA	6 cut(s)	112, 416, 571, 877, 1085, 1097
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	4 cut(s)	532, 697, 1089, 1102
HpyCH4III	ACNGT	3 cut(s)	463, 806, 980
HpyCH4V	TGCA	9 cut(s)	4, 472, 658, 678, 709, 715, 822, 944, 999
HpyF10VI	GCNNNNNNNGC	1 cut(s)	675
HpyF3I	CTNAG	4 cut(s)	125, 333, 636, 788
Hsp92II	CATG	8 cut(s)	224, 341, 574, 590, 709, 801, 919, 971
Kzo9I	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
LguI	GCTCTTC	2 cut(s)	435, 572
LmnI	GCTCC	3 cut(s)	145, 674, 902
Lsp1109I	GCAGC	2 cut(s)	690, 806
LweI	GCATC	3 cut(s)	34, 645, 702
MaeI	CTAG	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	457, 1117
MalI	GATC	5 cut(s)	405, 733, 1009, 1030, 1051
MboI	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
MboII	GAAGA	9 cut(s)	239, 273, 309, 413, 431, 452, 569, 586, 589
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	2 cut(s)	150, 814
MluCI	AATT	5 cut(s)	29, 34, 118, 134, 235
MlyI	GAGTC	2 cut(s)	441, 874
MnlI	CCTC	9 cut(s)	120, 204, 264, 295, 369, 415, 783, 1093, 1126
Mph1103I	ATGCAT	1 cut(s)	717
MseI	TTAA	5 cut(s)	137, 365, 600, 948, 1017
MslI	CAYNNNNRTG	3 cut(s)	710, 916, 1101
MspI	CCGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	2 cut(s)	582, 1066
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	675
NdeI	CATATG	2 cut(s)	523, 717
NdeII	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
NlaIII	CATG	8 cut(s)	224, 341, 574, 590, 709, 801, 919, 971
NlaIV	GGNNCC	2 cut(s)	215, 725
NsiI	ATGCAT	1 cut(s)	717
NspI	RCATGY	1 cut(s)	709
PagI	TCATGA	1 cut(s)	570
PciSI	GCTCTTC	2 cut(s)	435, 572
PctI	GAATGC	2 cut(s)	582, 1066
PfeI	GAWTC	2 cut(s)	547, 755
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	680, 781, 821
PleI	GAGTC	2 cut(s)	440, 874
PpsI	GAGTC	2 cut(s)	440, 874
PshBI	ATTAAT	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	215, 725
PspPI	GGNCC	4 cut(s)	650, 724, 749, 1039
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	3 cut(s)	493, 502, 698
RsaNI	GTAC	3 cut(s)	492, 501, 697
RseI	CAYNNNNRTG	3 cut(s)	710, 916, 1101
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	2 cut(s)	435, 572
SaqAI	TTAA	5 cut(s)	137, 365, 600, 948, 1017
SatI	GCNGC	3 cut(s)	679, 780, 820
Sau3AI	GATC	5 cut(s)	403, 731, 1007, 1028, 1049
Sau96I	GGNCC	4 cut(s)	650, 724, 749, 1039
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	2 cut(s)	441, 874
SduI	GDGCHC	2 cut(s)	150, 814
SfaNI	GCATC	3 cut(s)	34, 645, 702
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	1039
SmiMI	CAYNNNNRTG	3 cut(s)	710, 916, 1101
SmlI	CTYRAG	3 cut(s)	551, 813, 1034
SmoI	CTYRAG	3 cut(s)	551, 813, 1034
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	5 cut(s)	29, 34, 118, 134, 235
SsiI	CCGC	2 cut(s)	408, 780
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	463, 806, 980
TasI	AATT	5 cut(s)	29, 34, 118, 134, 235
TatI	WGTACW	2 cut(s)	491, 500
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	547, 755
Tru1I	TTAA	5 cut(s)	137, 365, 600, 948, 1017
Tru9I	TTAA	5 cut(s)	137, 365, 600, 948, 1017
TseI	GCWGC	2 cut(s)	678, 819
TspDTI	ATGAA	6 cut(s)	282, 543, 575, 587, 904, 984
TspGWI	ACGGA	3 cut(s)	392, 744, 915
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	1039
VspI	ATTAAT	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	691
XapI	RAATTY	3 cut(s)	34, 118, 235
XceI	RCATGY	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.