Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

15190872 .. 15193791

Gene Structure 2920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1142800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTTTATGGAACCATCATGTGGAAGACCAAAATTTGTGCTTTCAAGCACCTCCTTTTATTGAATGGCTGAAGCCATCTTCCGTTTTTTCATCATCATCAACATCATCATCGTCTTCCCCTTGTTTATCTGAGCATGGCACTATACAATGCTTGCCTCTTTTAAGCCAGTTTACGGATACCAAGCCGGTGAAAGTAGAAGATCGCGGGGTGCAGGAAGAGGGTTTTGGAGTCAAAGAAGAGCAGATGGAGAAAGTTACAGTTGCCTTGCACATTGGACTTCCTAATAGTACTAATAGTACAGGTGATAAATCAGAAACATATGATAAAAATAAGAAGGTTTTGAATCTCAAGGAAGAACAAGTAGTCATGAAGAAGAGCATTCATGGTTGTTCGTTTAAGGCAGAAAGTAGGTTTTGGATACCAACGCCTGCTCAGGTTCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATTTGCAGCAAGACCTTCAATAGGTACAATAACATGCAGATGCATATGTGGGGCCACGGATCTGAATATAGAAAAGGGCCAGATTCTCTAAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTACTGTTGTGCTCAAGGCTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCACTCAAAGACTTCAGAACTCTCCAGACTCATTACAAGAGAAAGCACGGAGCAAAGCCATTCATGTGTAGAAAATGTGCCAAAACATTTGCAGTTAAAGGAGACTGGAGAACCCATGAAAAGAACTGTGGCAAGCTGTGGTATTGCACTTGTGGATCGGATTTTAAACACAAAAGATCACTCAAGGACCATATTAGATCATTTGGTAAGGGGCATTCTCCACACCCTTCTCTTGATGGTTTTCACGAGGATGAGAAGGAATGTGTAACTGGTTCGGAAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

313

Amino Acids

35.32

Weight (kDa)

8.91

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	200 - 234	4.3e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	237 - 261	1.7e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	207, 579
AclWI	GGATC	2 cut(s)	538, 814
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	2 cut(s)	92, 649
AfaI	GTAC	3 cut(s)	292, 301, 497
AfiI	CCNNNNNNNGG	3 cut(s)	22, 175, 492
AgsI	TTSAA	4 cut(s)	47, 65, 346, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	1 cut(s)	787
AluI	AGCT	1 cut(s)	787
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	2 cut(s)	538, 814
AoxI	GGCC	3 cut(s)	449, 523, 548
ApeKI	GCWGC	2 cut(s)	477, 618
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	449, 523, 548, 838
AsuHPI	GGTGA	2 cut(s)	202, 317
AvaII	GGWCC	1 cut(s)	838
BauI	CACGAG	1 cut(s)	896
BbsI	GAAGAC	2 cut(s)	33, 108
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	489, 605
BccI	CCATC	4 cut(s)	24, 85, 241, 881
BciVI	GTATCC	2 cut(s)	172, 414
BcoDI	GTCTC	1 cut(s)	747
BfuI	GTATCC	2 cut(s)	172, 414
BisI	GCNGC	3 cut(s)	478, 579, 619
BlsI	GCNGC	3 cut(s)	479, 580, 620
BmcAI	AGTACT	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	838
BmgT120I	GGNCC	4 cut(s)	449, 523, 548, 838
BmiI	GGNNCC	2 cut(s)	14, 524
BmsI	GCATC	2 cut(s)	444, 501
BpiI	GAAGAC	2 cut(s)	33, 108
BpmI	CTGGAG	2 cut(s)	659, 778
Bpu10I	CCTNAGC	2 cut(s)	435, 587
BpuEI	CTTGAG	3 cut(s)	335, 597, 818
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 175, 492
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	169, 761, 925
Bse3DI	GCAATG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	907
BseLI	CCNNNNNNNGG	3 cut(s)	22, 175, 492
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	123, 449, 578
BseNI	ACTGG	3 cut(s)	169, 761, 925
BseXI	GCAGC	2 cut(s)	489, 605
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	451, 525, 550
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	22, 175, 492
BsmAI	GTCTC	1 cut(s)	747
BsmI	GAATGC	2 cut(s)	381, 865
BsnI	GGCC	3 cut(s)	451, 525, 550
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	5 cut(s)	202, 530, 806, 827, 848
BspACI	CCGC	2 cut(s)	207, 579
BspANI	GGCC	3 cut(s)	451, 525, 550
BspCNI	CTCAG	3 cut(s)	124, 448, 579
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	14, 524
BspPI	GGATC	2 cut(s)	538, 814
BspQI	GCTCTTC	2 cut(s)	234, 371
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	169, 761, 925
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	5 cut(s)	202, 530, 806, 827, 848
BssSI	CACGAG	1 cut(s)	896
Bst2BI	CACGAG	1 cut(s)	896
Bst4CI	ACNGT	3 cut(s)	262, 605, 779
Bst6I	CTCTTC	4 cut(s)	213, 234, 371, 924
BstC8I	GCNNGC	4 cut(s)	155, 432, 466, 785
BstDEI	CTNAG	3 cut(s)	132, 435, 587
BstDSI	CCRYGG	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	907
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	5 cut(s)	205, 533, 809, 830, 851
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	5 cut(s)	202, 530, 806, 827, 848
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	508
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	489, 605
BstV2I	GAAGAC	2 cut(s)	33, 108
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuI	GTATCC	2 cut(s)	172, 414
BsuRI	GGCC	3 cut(s)	451, 525, 550
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	907
Cac8I	GCNNGC	4 cut(s)	155, 432, 466, 785
CciI	TCATGA	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	449, 523, 548, 838
Csp6I	GTAC	3 cut(s)	291, 300, 496
CviAII	CATG	8 cut(s)	20, 137, 370, 386, 505, 597, 715, 767
CviQI	GTAC	3 cut(s)	291, 300, 496
DdeI	CTNAG	3 cut(s)	132, 435, 587
DpnI	GATC	5 cut(s)	204, 532, 808, 829, 850
DpnII	GATC	5 cut(s)	202, 530, 806, 827, 848
DraI	TTTAAA	1 cut(s)	817
Eam1104I	CTCTTC	4 cut(s)	213, 234, 371, 924
EarI	CTCTTC	4 cut(s)	213, 234, 371, 924
Eco47I	GGWCC	1 cut(s)	838
Eco57I	CTGAAG	2 cut(s)	92, 649
EcoNI	CCTNNNNNAGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	516
FaeI	CATG	8 cut(s)	23, 140, 373, 389, 508, 600, 718, 770
FatI	CATG	8 cut(s)	19, 136, 369, 385, 504, 596, 714, 766
FauI	CCCGC	1 cut(s)	200
FauNDI	CATATG	2 cut(s)	322, 516
Fnu4HI	GCNGC	3 cut(s)	478, 579, 619
FokI	GGATG	1 cut(s)	914
Fsp4HI	GCNGC	3 cut(s)	478, 579, 619
GluI	GCNGC	3 cut(s)	478, 579, 619
GsuI	CTGGAG	2 cut(s)	659, 778
HaeIII	GGCC	3 cut(s)	451, 525, 550
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	8 cut(s)	23, 140, 373, 389, 508, 600, 718, 770
HinfI	GANTC	4 cut(s)	231, 346, 554, 679
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	202, 317
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	6 cut(s)	133, 316, 535, 668, 811, 928
Hpy188III	TCNNGA	4 cut(s)	370, 676, 884, 896
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	331, 496, 888, 901
HpyCH4III	ACNGT	3 cut(s)	262, 605, 779
HpyCH4V	TGCA	9 cut(s)	214, 271, 457, 477, 508, 514, 621, 743, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	3 cut(s)	132, 435, 587
Hsp92II	CATG	8 cut(s)	23, 140, 373, 389, 508, 600, 718, 770
Kzo9I	GATC	5 cut(s)	202, 530, 806, 827, 848
LguI	GCTCTTC	2 cut(s)	234, 371
LmnI	GCTCC	2 cut(s)	473, 701
Lsp1109I	GCAGC	2 cut(s)	489, 605
LweI	GCATC	2 cut(s)	444, 501
MaeIII	GTNAC	2 cut(s)	256, 916
MalI	GATC	5 cut(s)	204, 532, 808, 829, 850
MboI	GATC	5 cut(s)	202, 530, 806, 827, 848
MboII	GAAGA	9 cut(s)	38, 72, 108, 212, 230, 251, 368, 385, 388
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	240, 673
MnlI	CCTC	6 cut(s)	63, 168, 214, 582, 892, 925
Mph1103I	ATGCAT	1 cut(s)	516
MseI	TTAA	4 cut(s)	164, 399, 747, 816
MslI	CAYNNNNRTG	3 cut(s)	509, 715, 900
MspI	CCGG	1 cut(s)	188
Mva1269I	GAATGC	2 cut(s)	381, 865
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeI	CATATG	2 cut(s)	322, 516
NdeII	GATC	5 cut(s)	202, 530, 806, 827, 848
NlaIII	CATG	8 cut(s)	23, 140, 373, 389, 508, 600, 718, 770
NlaIV	GGNNCC	2 cut(s)	14, 524
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	1 cut(s)	369
PciSI	GCTCTTC	2 cut(s)	234, 371
PctI	GAATGC	2 cut(s)	381, 865
PfeI	GAWTC	2 cut(s)	346, 554
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	479, 580, 620
PleI	GAGTC	2 cut(s)	239, 673
PpsI	GAGTC	2 cut(s)	239, 673
PspN4I	GGNNCC	2 cut(s)	14, 524
PspPI	GGNCC	4 cut(s)	449, 523, 548, 838
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	3 cut(s)	292, 301, 497
RsaNI	GTAC	3 cut(s)	291, 300, 496
RseI	CAYNNNNRTG	3 cut(s)	509, 715, 900
SapI	GCTCTTC	2 cut(s)	234, 371
SaqAI	TTAA	4 cut(s)	164, 399, 747, 816
SatI	GCNGC	3 cut(s)	478, 579, 619
Sau3AI	GATC	5 cut(s)	202, 530, 806, 827, 848
Sau96I	GGNCC	4 cut(s)	449, 523, 548, 838
ScaI	AGTACT	1 cut(s)	292
SchI	GAGTC	2 cut(s)	240, 673
SduI	GDGCHC	1 cut(s)	613
SetI	ASST	8 cut(s)	55, 307, 342, 416, 441, 488, 497, 789
SfaNI	GCATC	2 cut(s)	444, 501
SinI	GGWCC	1 cut(s)	838
SmiMI	CAYNNNNRTG	3 cut(s)	509, 715, 900
SmlI	CTYRAG	3 cut(s)	350, 612, 833
SmoI	CTYRAG	3 cut(s)	350, 612, 833
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	207, 579
TaaI	ACNGT	3 cut(s)	262, 605, 779
TasI	AATT	1 cut(s)	34
TatI	WGTACW	2 cut(s)	290, 299
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	346, 554
Tru1I	TTAA	4 cut(s)	164, 399, 747, 816
Tru9I	TTAA	4 cut(s)	164, 399, 747, 816
TseI	GCWGC	2 cut(s)	477, 618
TspDTI	ATGAA	5 cut(s)	81, 374, 386, 703, 783
TspGWI	ACGGA	4 cut(s)	73, 191, 543, 714
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	838
XagI	CCTNNNNNAGG	1 cut(s)	490
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	508
ZrmI	AGTACT	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.