Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

9870683 .. 9873935

Gene Structure 3253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTTTATGGAACCATCATGTGGAAGGCCAAAATTTGTGCTTTCAAGCACCTCCTTTCATTGAATGGCTGAAGCCACCTTCCTCTTTTTCTTCATCATCATCCCCTTCTTTTTGCTTATCTGAGAATAGCACTACTATGCAATGCTTGCCTCTTTTAAGCCAGTTTACAGACACCAAGCCAATGAAAATAGAAGATGCTGGGGTGCAGAAAGAGGGTTTTGGAGTCAAAGAAGAGAAAATGGAGCAAGTTACAGTGGCCTTGCGCATTGGACTGCCAAATAGTACTAGTGAAGCTGATCAATCAGACACTCATCATGAGAATAAGAAGGTTTTGGATCTCAAGGAAGAAGAAGGAGTAGCCATGAGGAAGAGCTTTCATGGGTGCTCTTTTAATGCAGAGAGTAGGTTTTGGATACCAACACCTGCTCAGATTCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATTTGCAGCAAGACCTTCAATAGGTACAATAACATGCAGATGCATATGTGGGGCCACGGATCTGAATTTAGAAAAGGGCCAGATTCTCTCAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTATTGCTGTGCTCAAGGCTGCAAGAACAACATCAATCACCCAAGAGCCAAGCCACTGAAAGACTTCAGAACTCTCCAAACTCACTACAAGAGAAAGCATGGAGCAAAGCCATTCATGTGTAGAAAATGTGCCAAAACATTTGCAGTTAAGGGAGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTATGGTATTGCACCTGTGGATCTGATTTCAAGCACAAAAGGTCACTCAAGGACCACATTAGATCCTTCGGAAAAGGGCACTCTCCACACCCTTCTCTTGATGGTTTTCATGAGGATGAGAAGGAATGCATAACTGGTTCTGAAGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

311

Amino Acids

35.12

Weight (kDa)

8.71

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	1 cut(s)	573
AclWI	GGATC	4 cut(s)	345, 532, 808, 837
AcsI	RAATTY	2 cut(s)	34, 530
AcuI	CTGAAG	2 cut(s)	92, 643
AfaI	GTAC	2 cut(s)	286, 491
AfiI	CCNNNNNNNGG	2 cut(s)	22, 486
AgsI	TTSAA	4 cut(s)	47, 65, 484, 811
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	3 cut(s)	296, 375, 781
AluI	AGCT	3 cut(s)	296, 375, 781
Alw21I	GWGCWC	2 cut(s)	389, 607
AlwI	GGATC	4 cut(s)	345, 532, 808, 837
AoxI	GGCC	5 cut(s)	28, 258, 443, 517, 542
ApeKI	GCWGC	2 cut(s)	471, 612
ApoI	RAATTY	2 cut(s)	34, 530
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	4 cut(s)	443, 517, 542, 832
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	861
Bbv12I	GWGCWC	2 cut(s)	389, 607
BbvCI	CCTCAGC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	483, 599
BccI	CCATC	2 cut(s)	24, 875
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	298
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	472, 573, 613
BlsI	GCNGC	3 cut(s)	473, 574, 614
BmcAI	AGTACT	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	832
BmgT120I	GGNCC	4 cut(s)	443, 517, 542, 832
BmiI	GGNNCC	2 cut(s)	14, 518
BmsI	GCATC	3 cut(s)	187, 438, 495
Bpu10I	CCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	3 cut(s)	326, 591, 812
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 486
Bse1I	ACTGG	2 cut(s)	163, 919
Bse3DI	GCAATG	2 cut(s)	149, 582
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	101, 901
BseLI	CCNNNNNNNGG	2 cut(s)	22, 486
BseMI	GCAATG	2 cut(s)	149, 582
BseMII	CTCAG	3 cut(s)	114, 443, 572
BseNI	ACTGG	2 cut(s)	163, 919
BseSI	GKGCMC	1 cut(s)	861
BseXI	GCAGC	2 cut(s)	483, 599
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	5 cut(s)	30, 260, 445, 519, 544
BsiHKAI	GWGCWC	2 cut(s)	389, 607
BslI	CCNNNNNNNGG	2 cut(s)	22, 486
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	5 cut(s)	30, 260, 445, 519, 544
Bsp1286I	GDGCHC	3 cut(s)	389, 607, 861
Bsp143I	GATC	5 cut(s)	298, 337, 524, 800, 842
BspACI	CCGC	1 cut(s)	573
BspANI	GGCC	5 cut(s)	30, 260, 445, 519, 544
BspCNI	CTCAG	3 cut(s)	115, 442, 573
BspHI	TCATGA	2 cut(s)	316, 889
BspLI	GGNNCC	2 cut(s)	14, 518
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	4 cut(s)	345, 532, 808, 837
BspQI	GCTCTTC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	149, 582
BsrI	ACTGG	2 cut(s)	163, 919
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	5 cut(s)	298, 337, 524, 800, 842
Bst4CI	ACNGT	2 cut(s)	256, 773
Bst6I	CTCTTC	2 cut(s)	228, 365
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	149, 460
BstDEI	CTNAG	3 cut(s)	123, 429, 581
BstDSI	CCRYGG	1 cut(s)	520
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	101, 901
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	5 cut(s)	301, 340, 527, 803, 845
BstMBI	GATC	5 cut(s)	298, 337, 524, 800, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 468
BstNSI	RCATGY	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	861
BstV1I	GCAGC	2 cut(s)	483, 599
BstX2I	RGATCY	4 cut(s)	337, 524, 800, 842
BstYI	RGATCY	4 cut(s)	337, 524, 800, 842
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	30, 260, 445, 519, 544
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	101, 901
BtsIMutI	CAGTG	2 cut(s)	261, 647
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	149, 460
CciI	TCATGA	2 cut(s)	316, 889
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	4 cut(s)	443, 517, 542, 832
Csp6I	GTAC	2 cut(s)	285, 490
CviQI	GTAC	2 cut(s)	285, 490
DdeI	CTNAG	3 cut(s)	123, 429, 581
DpnI	GATC	5 cut(s)	300, 339, 526, 802, 844
DpnII	GATC	5 cut(s)	298, 337, 524, 800, 842
Eam1104I	CTCTTC	2 cut(s)	228, 365
EarI	CTCTTC	2 cut(s)	228, 365
Eco47I	GGWCC	1 cut(s)	832
Eco57I	CTGAAG	2 cut(s)	92, 643
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoT22I	ATGCAT	2 cut(s)	510, 911
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	472, 573, 613
FokI	GGATG	2 cut(s)	88, 908
Fsp4HI	GCNGC	3 cut(s)	472, 573, 613
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	472, 573, 613
GsaI	CCCAGC	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	30, 260, 445, 519, 544
HhaI	GCGC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	225, 433, 548
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	8 cut(s)	124, 307, 432, 529, 662, 805, 851, 922
Hpy188III	TCNNGA	3 cut(s)	317, 878, 890
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	9 cut(s)	20, 90, 117, 322, 347, 490, 856, 882, 895
HpyCH4III	ACNGT	2 cut(s)	256, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 468
HpyF3I	CTNAG	3 cut(s)	123, 429, 581
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	5 cut(s)	298, 337, 524, 800, 842
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	3 cut(s)	244, 467, 695
LpnPI	CCDG	7 cut(s)	176, 186, 438, 558, 582, 808, 900
Lsp1109I	GCAGC	2 cut(s)	483, 599
LweI	GCATC	3 cut(s)	187, 438, 495
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	250, 822
MalI	GATC	5 cut(s)	300, 339, 526, 802, 844
MboI	GATC	5 cut(s)	298, 337, 524, 800, 842
MboII	GAAGA	7 cut(s)	84, 206, 245, 359, 362, 382, 778
MflI	RGATCY	4 cut(s)	337, 524, 800, 842
MhlI	GDGCHC	3 cut(s)	389, 607, 861
MluCI	AATT	2 cut(s)	34, 530
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	7 cut(s)	63, 94, 162, 208, 360, 576, 886
Mph1103I	ATGCAT	2 cut(s)	510, 911
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	3 cut(s)	158, 393, 741
MslI	CAYNNNNRTG	4 cut(s)	137, 503, 709, 894
Mva1269I	GAATGC	1 cut(s)	911
MwoI	GCNNNNNNNGC	2 cut(s)	148, 468
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	5 cut(s)	298, 337, 524, 800, 842
NlaIV	GGNNCC	2 cut(s)	14, 518
NmuCI	GTSAC	1 cut(s)	822
NsbI	TGCGCA	1 cut(s)	266
NsiI	ATGCAT	2 cut(s)	510, 911
NspI	RCATGY	1 cut(s)	502
PagI	TCATGA	2 cut(s)	316, 889
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	911
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	2 cut(s)	433, 548
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	473, 574, 614
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	14, 518
PspPI	GGNCC	4 cut(s)	443, 517, 542, 832
PsuI	RGATCY	4 cut(s)	337, 524, 800, 842
RsaI	GTAC	2 cut(s)	286, 491
RsaNI	GTAC	2 cut(s)	285, 490
RseI	CAYNNNNRTG	4 cut(s)	137, 503, 709, 894
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	158, 393, 741
SatI	GCNGC	3 cut(s)	472, 573, 613
Sau3AI	GATC	5 cut(s)	298, 337, 524, 800, 842
Sau96I	GGNCC	4 cut(s)	443, 517, 542, 832
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	3 cut(s)	389, 607, 861
SfaNI	GCATC	3 cut(s)	187, 438, 495
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	4 cut(s)	137, 503, 709, 894
SmlI	CTYRAG	3 cut(s)	341, 606, 827
SmoI	CTYRAG	3 cut(s)	341, 606, 827
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	2 cut(s)	34, 530
SsiI	CCGC	1 cut(s)	573
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	256, 773
TasI	AATT	2 cut(s)	34, 530
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	433, 548
Tru1I	TTAA	3 cut(s)	158, 393, 741
Tru9I	TTAA	3 cut(s)	158, 393, 741
TscAI	CASTG	2 cut(s)	261, 654
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	2 cut(s)	471, 612
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	6 cut(s)	49, 84, 200, 368, 697, 878
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	261, 654
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	832
XagI	CCTNNNNNAGG	1 cut(s)	484
XapI	RAATTY	2 cut(s)	34, 530
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	286
Zsp2I	ATGCAT	2 cut(s)	510, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.