Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Forward (+)

282704 .. 285133

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000776.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgggtttatggaataaccagcaccaggtggaagactaccgaaatttgtgtgttcaagcagcaccgccttttatcgaatggctcaaaccatcagcgtcgtcctcttttgcttcatcactgtcttcatcatcattgacgtctttttgttcgaattcgttggacgaccaaaacagtagtactctgcaatgcttgcctcttttaagcaggtttaccgatacaaagccggtgaaaagagaagatattggggtacagagagagggtttcggagtgaaagaagagcagatagagaaggttacagtggcactgcacattggactgcctaatagcgcaactgcagatgatgagaagaaggttttggatgatgtcaaggaagaagacgtagtactaccaataaccaagaatagatttaactccaatggatgctctgcgacagagagtaggttttggataccgacgcctgctcagattctagttgggccgatgcagtttgcttgttccatttgcagcaagaccttcaatagatacaacaacatgcagatgcatatgtggggccacggatctgaatttaggaaagggccagattctctaaaaggaacacaaccagccgcaatgctgaggctaccatgctactgttgtgctcagggctgcaagaacaatatcaaccatccaagagccaagccactcaaagacttcagaactctccaaactcactacaagagaaagcatggagcaaagccatttatgtgcagaaaatgcggcaaaacatttgcagtcaaaggtgattggagaacacatgaaaagaactgcggcaagttgtggtattgcagctgtggatcggatttcaaacacaaaagatcgctcaaagaccacatcaggtccttcggaaaagggcattctccgcgtccttgtgtcgatggttttcatgaggatgatcagaaggaatgcattactggttctgaggatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

322

Amino Acids

36.3

Weight (kDa)

8.76

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	195
AccII	CGCG	1 cut(s)	901
AciI	CCGC	5 cut(s)	65, 606, 756, 807, 899
AclWI	GGATC	2 cut(s)	565, 841
AcsI	RAATTY	3 cut(s)	43, 151, 563
AcuI	CTGAAG	1 cut(s)	676
AcyI	GRCGYC	2 cut(s)	137, 455
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	3 cut(s)	178, 249, 384
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	56, 517, 844
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	1 cut(s)	828
AluI	AGCT	1 cut(s)	828
Alw21I	GWGCWC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	565, 841
AoxI	GGCC	3 cut(s)	476, 550, 575
ApeKI	GCWGC	4 cut(s)	59, 504, 645, 825
ApoI	RAATTY	3 cut(s)	43, 151, 563
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	476, 550, 575, 876
AsuHPI	GGTGA	2 cut(s)	238, 791
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	876
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbsI	GAAGAC	3 cut(s)	39, 114, 381
Bbv12I	GWGCWC	1 cut(s)	640
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	4 cut(s)	71, 516, 632, 837
BccI	CCATC	3 cut(s)	97, 672, 908
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	1 cut(s)	931
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	7 cut(s)	60, 505, 606, 646, 757, 808, 826
BlsI	GCNGC	7 cut(s)	61, 506, 607, 647, 758, 809, 827
BmcAI	AGTACT	2 cut(s)	178, 384
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	876
BmgT120I	GGNCC	4 cut(s)	476, 550, 575, 876
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	410, 471, 528
BpiI	GAAGAC	3 cut(s)	39, 114, 381
Bpu10I	CCTNAGC	2 cut(s)	614, 639
Bpu14I	TTCGAA	1 cut(s)	149
BsaHI	GRCGYC	2 cut(s)	137, 455
BsaJI	CCNNGG	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	955
Bse3DI	GCAATG	2 cut(s)	191, 615
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	5 cut(s)	364, 425, 664, 934, 967
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	191, 615
BseMII	CTCAG	4 cut(s)	476, 605, 653, 948
BseNI	ACTGG	1 cut(s)	955
BseXI	GCAGC	4 cut(s)	71, 516, 632, 837
BsgI	GTGCAG	2 cut(s)	290, 766
Bsh1236I	CGCG	1 cut(s)	901
BshFI	GGCC	3 cut(s)	478, 552, 577
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	2 cut(s)	892, 947
BsnI	GGCC	3 cut(s)	478, 552, 577
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	557, 833, 854, 931
BspACI	CCGC	5 cut(s)	65, 606, 756, 807, 899
BspANI	GGCC	3 cut(s)	478, 552, 577
BspCNI	CTCAG	4 cut(s)	475, 606, 652, 949
BspFNI	CGCG	1 cut(s)	901
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	565, 841
BspQI	GCTCTTC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	191, 615
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	955
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	4 cut(s)	557, 833, 854, 931
BssNI	GRCGYC	2 cut(s)	137, 455
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	4 cut(s)	120, 173, 298, 632
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	2 cut(s)	137, 455
BstAPI	GCANNNNNTGC	2 cut(s)	190, 753
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	191, 459
BstDEI	CTNAG	4 cut(s)	462, 614, 639, 957
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	5 cut(s)	364, 425, 664, 934, 967
BstFNI	CGCG	1 cut(s)	901
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	560, 836, 857, 934
BstMBI	GATC	4 cut(s)	557, 833, 854, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 753, 898
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	901
BstV1I	GCAGC	4 cut(s)	71, 516, 632, 837
BstV2I	GAAGAC	3 cut(s)	39, 114, 381
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	478, 552, 577
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	5 cut(s)	364, 425, 664, 934, 967
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	3 cut(s)	116, 302, 303
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	191, 459
CciI	TCATGA	1 cut(s)	922
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	4 cut(s)	476, 550, 575, 876
CseI	GACGC	3 cut(s)	84, 463, 890
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	177, 248, 383
CviAII	CATG	5 cut(s)	532, 624, 725, 794, 923
CviQI	GTAC	3 cut(s)	177, 248, 383
DdeI	CTNAG	4 cut(s)	462, 614, 639, 957
DpnI	GATC	4 cut(s)	559, 835, 856, 933
DpnII	GATC	4 cut(s)	557, 833, 854, 931
DraIII	CACNNNGTG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	876
Eco57I	CTGAAG	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	24
EcoT22I	ATGCAT	2 cut(s)	543, 947
FaeI	CATG	5 cut(s)	535, 627, 728, 797, 926
FaiI	YATR	9 cut(s)	10, 533, 543, 545, 625, 726, 743, 795, 924
FatI	CATG	5 cut(s)	531, 623, 724, 793, 922
FauNDI	CATATG	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	7 cut(s)	60, 505, 606, 646, 757, 808, 826
FokI	GGATG	4 cut(s)	371, 432, 651, 941
Fsp4HI	GCNGC	7 cut(s)	60, 505, 606, 646, 757, 808, 826
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	7 cut(s)	60, 505, 606, 646, 757, 808, 826
HaeIII	GGCC	3 cut(s)	478, 552, 577
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	3 cut(s)	84, 463, 890
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	2 cut(s)	137, 455
Hin1II	CATG	5 cut(s)	535, 627, 728, 797, 926
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	466, 581
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	238, 791
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	8 cut(s)	266, 465, 562, 695, 838, 884, 936, 958
Hpy188III	TCNNGA	1 cut(s)	923
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	2 cut(s)	100, 457
HpyAV	CCTTC	5 cut(s)	283, 343, 523, 889, 931
HpyCH4III	ACNGT	4 cut(s)	120, 173, 298, 632
HpyCH4IV	ACGT	2 cut(s)	137, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 753, 898
HpyF3I	CTNAG	4 cut(s)	462, 614, 639, 957
HpySE526I	ACGT	2 cut(s)	137, 378
Hsp92I	GRCGYC	2 cut(s)	137, 455
Hsp92II	CATG	5 cut(s)	535, 627, 728, 797, 926
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	4 cut(s)	557, 833, 854, 931
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	4 cut(s)	71, 516, 632, 837
LweI	GCATC	3 cut(s)	410, 471, 528
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	2 cut(s)	137, 378
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	4 cut(s)	559, 835, 856, 933
MboI	GATC	4 cut(s)	557, 833, 854, 931
MboII	GAAGA	7 cut(s)	44, 114, 248, 287, 358, 383, 386
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	3 cut(s)	43, 151, 563
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	112, 204, 250, 609, 919, 952
Mph1103I	ATGCAT	2 cut(s)	543, 947
MseI	TTAA	2 cut(s)	200, 408
MslI	CAYNNNNRTG	3 cut(s)	536, 742, 927
MspA1I	CMGCKG	1 cut(s)	828
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	892, 947
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	901
MwoI	GCNNNNNNNGC	3 cut(s)	190, 753, 898
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	4 cut(s)	557, 833, 854, 931
NlaIII	CATG	5 cut(s)	535, 627, 728, 797, 926
NlaIV	GGNNCC	1 cut(s)	551
NsiI	ATGCAT	2 cut(s)	543, 947
NspI	RCATGY	1 cut(s)	535
NspV	TTCGAA	1 cut(s)	149
PagI	TCATGA	1 cut(s)	922
PciSI	GCTCTTC	1 cut(s)	270
PctI	GAATGC	2 cut(s)	892, 947
PfeI	GAWTC	2 cut(s)	466, 581
PkrI	GCNGC	7 cut(s)	61, 506, 607, 647, 758, 809, 827
PpuMI	RGGWCCY	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	4 cut(s)	476, 550, 575, 876
PspPPI	RGGWCCY	1 cut(s)	876
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	828
RsaI	GTAC	3 cut(s)	178, 249, 384
RsaNI	GTAC	3 cut(s)	177, 248, 383
RseI	CAYNNNNRTG	3 cut(s)	536, 742, 927
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	200, 408
SatI	GCNGC	7 cut(s)	60, 505, 606, 646, 757, 808, 826
Sau3AI	GATC	4 cut(s)	557, 833, 854, 931
Sau96I	GGNCC	4 cut(s)	476, 550, 575, 876
ScaI	AGTACT	2 cut(s)	178, 384
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	640
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	410, 471, 528
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	876
SmiMI	CAYNNNNRTG	3 cut(s)	536, 742, 927
Sse9I	AATT	3 cut(s)	43, 151, 563
SsiI	CCGC	5 cut(s)	65, 606, 756, 807, 899
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	120, 173, 298, 632
TaiI	ACGT	2 cut(s)	140, 381
TaqI	TCGA	3 cut(s)	75, 149, 912
TasI	AATT	3 cut(s)	43, 151, 563
TatI	WGTACW	2 cut(s)	176, 382
TauI	GCSGC	3 cut(s)	608, 759, 810
TfiI	GAWTC	2 cut(s)	466, 581
Tru1I	TTAA	2 cut(s)	200, 408
Tru9I	TTAA	2 cut(s)	200, 408
TscAI	CASTG	3 cut(s)	123, 303, 309
TseI	GCWGC	4 cut(s)	59, 504, 645, 825
TspDTI	ATGAA	4 cut(s)	102, 114, 810, 911
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	3 cut(s)	123, 303, 309
VpaK11BI	GGWCC	1 cut(s)	876
XapI	RAATTY	3 cut(s)	43, 151, 563
XceI	RCATGY	1 cut(s)	535
XspI	CTAG	1 cut(s)	470
ZraI	GACGTC	1 cut(s)	138
ZrmI	AGTACT	2 cut(s)	178, 384
Zsp2I	ATGCAT	2 cut(s)	543, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.