Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014106

Physical Location & Seq

Genomic Coordinates Reverse (-)

17775459 .. 17779209

Gene Structure 3751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTTATGGAATAACCAGCACCAGCAGGTGGAAGACTACCGAAATTTGTGTTTTCAGGCAGCTCCGCCGTTTATCGAATGGCTCAAACCATCAGCATCGTCCTCTTTGTCTTCATCACTGTCTTCATCATCGTTGACGTCTTTCTGTTCGTTGGAGGACCAAAACAGCAGTAGTCTGCAATGCCTGCCTCTCTTGAGCAGGTTTATCGATACCAAGCCGGTGAAAAGAGAAGATATTGGGGTGCGGAGAGAGGGTTCCGGAGTGAAAGAAGAGCAGATAGAGAATGTTACGGTGGCGCTGCACATAGGACTGCCTAATAGTACAACTGCAAATGATGAGAAGAACGTTTCGGATGGTGTTAAGGAAGTAGACGCAGTGCTACCAATAACCAAGAATAGGTTTAACGTCAATCGATACTCTGCGACTGCGACAGAGAGTAGATTCTGGATACCGACGCCTGCTCAGATTCTTGTTGGACCGATGCAGTTTGCTTGTTCCATTTGCAGCAAGACCTTCAATAGGTACAACAACATGCAGATGCATATGTGGGGACACGGATCCGAATTTAGGAAAGGGCCAGATTCTCTGAAAGGAGCACAACCAGCCGCAATGCTGAGGCTACCATGCTACTGTTGTGCTCAGGGCTGCAAGAACAACATCAACCATCCAAGAGCCAAGCCACTCAAGGACTTCAGAACTCTCCAAACTCACTACAAGAGAAAGCACGGCGCAAAGCCGTTTATGTGCAGAAAATGCGGCAAAACCTTTGCCGTCAAAGGTGATTGGAGAACTCATGAAAAGAACTGCGGCAAGTTGTGGTATTGCAGCTGCGGATCGGATTTCAAGCACAAAAGATCGCTCAAAGACCACATCCGATCCTTCGGGAAAGGTCATTCTCCGCGTACTTGTGTCGATGGTTTTCATGAGGATGATCAGAAGGAATGCATCACTGGCTCTGAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-met

Protein Analysis

324

Amino Acids

36.42

Weight (kDa)

9.01

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	210 - 244	4.5e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	247 - 271	6.8e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08290
fragaria_vesca	FvH4_3g24680
malus_domestica	MD03G1142800.v1.1 MD11G1163100.v1.1
prunus_persica	Prupe.6G127700_v2.0.a1
pyrus_communis	pycom03g09720 pycom11g13450
rosa_chinensis	RchiOBHm_Chr5g0044241
rosa_laevigata	RLG00000034258
rosa_multiflora	Rmu_sc0000776.1_g000055
rosa_roxburghii	Rroxscaffold_1G00036730
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297100 Rh5BG304500 Rh5CG331400 Rh5DG313400
rosa_wichuraiana	Rw5G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AatII	GACGTC	1 cut(s)	143
Acc36I	ACCTGC	2 cut(s)	19, 192
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	1 cut(s)	904
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	7 cut(s)	68, 247, 609, 759, 810, 834, 902
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	4 cut(s)	555, 568, 844, 873
AcsI	RAATTY	2 cut(s)	46, 566
AcuI	CTGAAG	1 cut(s)	679
AcyI	GRCGYC	2 cut(s)	140, 458
AfaI	GTAC	3 cut(s)	325, 527, 907
AfiI	CCNNNNNNNGG	4 cut(s)	31, 399, 522, 570
AgsI	TTSAA	2 cut(s)	520, 847
AloI	GAACNNNNNNTCC	2 cut(s)	241, 273
AluBI	AGCT	2 cut(s)	65, 831
AluI	AGCT	2 cut(s)	65, 831
Alw21I	GWGCWC	2 cut(s)	601, 643
AlwI	GGATC	4 cut(s)	555, 568, 844, 873
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	6 cut(s)	62, 301, 507, 648, 828, 831
ApoI	RAATTY	2 cut(s)	46, 566
AspLEI	GCGC	2 cut(s)	301, 734
AspS9I	GGNCC	3 cut(s)	160, 479, 578
AsuHPI	GGTGA	2 cut(s)	235, 794
AvaII	GGWCC	2 cut(s)	160, 479
BamHI	GGATCC	1 cut(s)	560
BbsI	GAAGAC	3 cut(s)	42, 105, 117
Bbv12I	GWGCWC	2 cut(s)	601, 643
BbvCI	CCTCAGC	1 cut(s)	617
BbvI	GCAGC	6 cut(s)	74, 288, 519, 635, 818, 840
BccI	CCATC	4 cut(s)	100, 350, 675, 911
BceAI	ACGGC	4 cut(s)	55, 724, 745, 758
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	934
BfoI	RGCGCY	1 cut(s)	302
BfuAI	ACCTGC	2 cut(s)	19, 192
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	9 cut(s)	63, 302, 508, 609, 649, 760, 811, 829, 832
BlsI	GCNGC	9 cut(s)	64, 303, 509, 610, 650, 761, 812, 830, 833
Bme18I	GGWCC	2 cut(s)	160, 479
BmgT120I	GGNCC	3 cut(s)	160, 479, 578
BmiI	GGNNCC	2 cut(s)	259, 562
BmsI	GCATC	4 cut(s)	107, 474, 531, 957
BpiI	GAAGAC	3 cut(s)	42, 105, 117
Bpu10I	CCTNAGC	2 cut(s)	617, 642
BpuEI	CTTGAG	2 cut(s)	217, 671
Bsa29I	ATCGAT	2 cut(s)	210, 415
BsaHI	GRCGYC	2 cut(s)	140, 458
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 399, 522, 570
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	958
Bse3DI	GCAATG	2 cut(s)	188, 618
BseAI	TCCGGA	1 cut(s)	260
BseCI	ATCGAT	2 cut(s)	210, 415
BseGI	GGATG	5 cut(s)	361, 667, 873, 937, 970
BseLI	CCNNNNNNNGG	4 cut(s)	31, 399, 522, 570
BseMI	GCAATG	2 cut(s)	188, 618
BseMII	CTCAG	4 cut(s)	479, 608, 656, 951
BseNI	ACTGG	1 cut(s)	958
BseXI	GCAGC	6 cut(s)	74, 288, 519, 635, 818, 840
BsgI	GTGCAG	2 cut(s)	287, 769
Bsh1236I	CGCG	1 cut(s)	904
BshFI	GGCC	1 cut(s)	580
BshVI	ATCGAT	2 cut(s)	210, 415
BsiHKAI	GWGCWC	2 cut(s)	601, 643
BsiSI	CCGG	2 cut(s)	221, 261
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	4 cut(s)	31, 399, 522, 570
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	601, 643
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	5 cut(s)	560, 836, 857, 878, 934
BspACI	CCGC	7 cut(s)	68, 247, 609, 759, 810, 834, 902
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	4 cut(s)	478, 609, 655, 952
BspDI	ATCGAT	2 cut(s)	210, 415
BspEI	TCCGGA	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	904
BspHI	TCATGA	2 cut(s)	796, 925
BspLI	GGNNCC	2 cut(s)	259, 562
BspMI	ACCTGC	2 cut(s)	19, 192
BspPI	GGATC	4 cut(s)	555, 568, 844, 873
BspQI	GCTCTTC	1 cut(s)	267
BsrDI	GCAATG	2 cut(s)	188, 618
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	958
BssAI	RCCGGY	1 cut(s)	220
BssMI	GATC	5 cut(s)	560, 836, 857, 878, 934
BssNI	GRCGYC	2 cut(s)	140, 458
Bst4CI	ACNGT	3 cut(s)	123, 295, 635
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	2 cut(s)	140, 458
BstAPI	GCANNNNNTGC	2 cut(s)	187, 756
BstC8I	GCNNGC	2 cut(s)	188, 462
BstDEI	CTNAG	4 cut(s)	465, 617, 642, 960
BstENI	CCTNNNNNAGG	1 cut(s)	520
BstF5I	GGATG	5 cut(s)	361, 667, 873, 937, 970
BstFNI	CGCG	1 cut(s)	904
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	301, 734
BstKTI	GATC	5 cut(s)	563, 839, 860, 881, 937
BstMBI	GATC	5 cut(s)	560, 836, 857, 878, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 605, 756, 954
BstNSI	RCATGY	1 cut(s)	538
BstUI	CGCG	1 cut(s)	904
BstV1I	GCAGC	6 cut(s)	74, 288, 519, 635, 818, 840
BstV2I	GAAGAC	3 cut(s)	42, 105, 117
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
Bsu15I	ATCGAT	2 cut(s)	210, 415
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	580
BsuTUI	ATCGAT	2 cut(s)	210, 415
BtsCI	GGATG	5 cut(s)	361, 667, 873, 937, 970
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	119, 384, 951
BveI	ACCTGC	2 cut(s)	19, 192
Cac8I	GCNNGC	2 cut(s)	188, 462
CciI	TCATGA	2 cut(s)	796, 925
CfoI	GCGC	2 cut(s)	301, 734
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	3 cut(s)	160, 479, 578
ClaI	ATCGAT	2 cut(s)	210, 415
CseI	GACGC	2 cut(s)	383, 466
Csp6I	GTAC	3 cut(s)	324, 526, 906
CviAII	CATG	4 cut(s)	535, 627, 797, 926
CviQI	GTAC	3 cut(s)	324, 526, 906
DdeI	CTNAG	4 cut(s)	465, 617, 642, 960
DpnI	GATC	5 cut(s)	562, 838, 859, 880, 936
DpnII	GATC	5 cut(s)	560, 836, 857, 878, 934
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	160, 479
Eco57I	CTGAAG	1 cut(s)	679
EcoNI	CCTNNNNNAGG	1 cut(s)	520
EcoT22I	ATGCAT	2 cut(s)	546, 950
FaeI	CATG	4 cut(s)	538, 630, 800, 929
FaiI	YATR	9 cut(s)	10, 308, 536, 546, 548, 628, 746, 798, 927
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	4 cut(s)	534, 626, 796, 925
FauNDI	CATATG	1 cut(s)	546
FbaI	TGATCA	1 cut(s)	934
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	9 cut(s)	63, 302, 508, 609, 649, 760, 811, 829, 832
FokI	GGATG	4 cut(s)	368, 654, 860, 944
Fsp4HI	GCNGC	9 cut(s)	63, 302, 508, 609, 649, 760, 811, 829, 832
GlaI	GCGC	2 cut(s)	300, 733
GluI	GCNGC	9 cut(s)	63, 302, 508, 609, 649, 760, 811, 829, 832
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	2 cut(s)	221, 261
HgaI	GACGC	2 cut(s)	383, 466
HhaI	GCGC	2 cut(s)	301, 734
Hin1I	GRCGYC	2 cut(s)	140, 458
Hin1II	CATG	4 cut(s)	538, 630, 800, 929
Hin6I	GCGC	2 cut(s)	299, 732
HinP1I	GCGC	2 cut(s)	299, 732
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	444, 469, 584
HpaII	CCGG	2 cut(s)	221, 261
HphI	GGTGA	2 cut(s)	235, 794
Hpy166II	GTNNAC	2 cut(s)	138, 373
Hpy188I	TCNGA	9 cut(s)	355, 468, 565, 591, 698, 841, 878, 939, 961
Hpy188III	TCNNGA	6 cut(s)	196, 261, 448, 797, 886, 926
Hpy8I	GTNNAC	2 cut(s)	138, 373
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	526, 892, 934
HpyCH4III	ACNGT	3 cut(s)	123, 295, 635
HpyCH4IV	ACGT	3 cut(s)	140, 348, 408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 605, 756, 954
HpyF3I	CTNAG	4 cut(s)	465, 617, 642, 960
HpySE526I	ACGT	3 cut(s)	140, 348, 408
Hsp92I	GRCGYC	2 cut(s)	140, 458
Hsp92II	CATG	4 cut(s)	538, 630, 800, 929
HspAI	GCGC	2 cut(s)	299, 732
Kpn2I	TCCGGA	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	560, 836, 857, 878, 934
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	70, 596
Lsp1109I	GCAGC	6 cut(s)	74, 288, 519, 635, 818, 840
LweI	GCATC	4 cut(s)	107, 474, 531, 957
MaeII	ACGT	3 cut(s)	140, 348, 408
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	562, 838, 859, 880, 936
MboI	GATC	5 cut(s)	560, 836, 857, 878, 934
MboII	GAAGA	6 cut(s)	47, 105, 117, 245, 284, 355
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	601, 643
MluCI	AATT	2 cut(s)	46, 566
MmeI	TCCRAC	2 cut(s)	135, 457
MnlI	CCTC	7 cut(s)	115, 151, 201, 247, 612, 922, 955
Mph1103I	ATGCAT	2 cut(s)	546, 950
MroI	TCCGGA	1 cut(s)	260
MseI	TTAA	2 cut(s)	363, 405
MslI	CAYNNNNRTG	2 cut(s)	539, 930
MspA1I	CMGCKG	1 cut(s)	831
MspI	CCGG	2 cut(s)	221, 261
Mva1269I	GAATGC	1 cut(s)	950
MvnI	CGCG	1 cut(s)	904
MwoI	GCNNNNNNNGC	4 cut(s)	187, 605, 756, 954
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	5 cut(s)	560, 836, 857, 878, 934
NlaIII	CATG	4 cut(s)	538, 630, 800, 929
NlaIV	GGNNCC	2 cut(s)	259, 562
NsiI	ATGCAT	2 cut(s)	546, 950
NspI	RCATGY	1 cut(s)	538
PagI	TCATGA	2 cut(s)	796, 925
PaqCI	CACCTGC	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	950
PfeI	GAWTC	3 cut(s)	444, 469, 584
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	9 cut(s)	64, 303, 509, 610, 650, 761, 812, 830, 833
Psp1406I	AACGTT	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	259, 562
PspPI	GGNCC	3 cut(s)	160, 479, 578
PsuI	RGATCY	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	831
RsaI	GTAC	3 cut(s)	325, 527, 907
RsaNI	GTAC	3 cut(s)	324, 526, 906
RseI	CAYNNNNRTG	2 cut(s)	539, 930
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	363, 405
SatI	GCNGC	9 cut(s)	63, 302, 508, 609, 649, 760, 811, 829, 832
Sau3AI	GATC	5 cut(s)	560, 836, 857, 878, 934
Sau96I	GGNCC	3 cut(s)	160, 479, 578
SduI	GDGCHC	2 cut(s)	601, 643
SfaNI	GCATC	4 cut(s)	107, 474, 531, 957
SinI	GGWCC	2 cut(s)	160, 479
SmiMI	CAYNNNNRTG	2 cut(s)	539, 930
SmlI	CTYRAG	2 cut(s)	196, 686
SmoI	CTYRAG	2 cut(s)	196, 686
Sse9I	AATT	2 cut(s)	46, 566
SsiI	CCGC	7 cut(s)	68, 247, 609, 759, 810, 834, 902
TaaI	ACNGT	3 cut(s)	123, 295, 635
TaiI	ACGT	3 cut(s)	143, 351, 411
TaqI	TCGA	4 cut(s)	78, 210, 415, 915
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	2 cut(s)	46, 566
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	3 cut(s)	611, 762, 813
TfiI	GAWTC	3 cut(s)	444, 469, 584
Tru1I	TTAA	2 cut(s)	363, 405
Tru9I	TTAA	2 cut(s)	363, 405
TscAI	CASTG	3 cut(s)	126, 384, 958
TseI	GCWGC	6 cut(s)	62, 301, 507, 648, 828, 831
TspDTI	ATGAA	4 cut(s)	105, 117, 813, 914
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	3 cut(s)	126, 384, 958
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	160, 479
XagI	CCTNNNNNAGG	1 cut(s)	520
XapI	RAATTY	2 cut(s)	46, 566
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	372
ZraI	GACGTC	1 cut(s)	141
Zsp2I	ATGCAT	2 cut(s)	546, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.