AT1G08350

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2632810 .. 2635866
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08350.4

Sequence Viewer

Length: 1527 bp
ATGAGCTCTTTATATAAGCTGAAATTTAGGGAGGACAAAACTCATTTTGTATTGTGCCGGAAGAGATTAACATCGAGTGATATTGCCAGGTTCAGAGATATTATTGCTCAAGATTACTACTTTCAAATGTACTACGATGATCTCCCTTTGTGGGGATTTGTTGGAAAAGTAGAGGGAGATTATTTTGGTCAAGGGGAGAAGCATACTAAGTATTATATATTCAGTCACTTAAAGTTCAATGTTCTGTACAATGCAGACAAAGTTATTGAGATCAACAGTTTTAGTGATCCGAGTTATATGGTTGATATATCCGAGAACACTGAGATTGATGTTCAATTTACATACTCGGTTTCTTGGAATCTGACTTCAGAACGCTCTGAGACAAGAATGAATAAGTACTCCCGGGCGTCGTTTCATCCTATCAGCCAGAAGATTCACTTCTTCTCATTTCTCAACTCGATAACTGTTGTTGTTTTGTTAATTGGACTTATATCTTTTCTCTTCATGCGCCATCTCAAGAATGAACTAAGAAGTTACTCTATCGGAGATGAAGAAGAGAGAAAGGAAGCAGGTTGGAAACTCGTACATAGTGATGTATTTCGATGTCCTCGGAACATCAGCTGGCTTTGTGCAATCTTAGGAACTGGTACTCAGTTGCTAATCTTGATTATTGCTCTATTTGCATTGGCCTTCACCGGTTTTCTCTACCCATACAATCGTGGAATGCTGTTGACTTCTCTCGTCATCATGTACACTCTAACATCAATAGTGGCTGGTTACACATCTACTTCTTTCCATAGCCAATTCGAGGGAAATAAACAGAAAAGGAGTGTTCGTCTTGCTGGGATCCTCTATCCGGTTCCTTTCTTCATAATACTTTCGGTTCTCAACACTGTGGCAATTACTTATGGGGCAACAGCTGCACTCCCCTTTGGCACAATAGTCATCATCATACTCATTTTCACTCTTTTGAATATCCCATTTCTCATGTTGGGAGGAGTGTTAGGTAACCGATTTGGATTATTAGAGTTTCAACCCCCATCCGCTGTTAAAAGAAACCCCCGAGAAATTCCACCACAGAATTGGTACCGTAGAAAGCTGTATCAGGTGTTTCTTGGAGGCTTTGTACCTTTCAGTGCAGTTGTTCTCGAATGGCACCAACTCTATGCAAGCTTGTGGGGATTTAAGATATATACCTCGCCTGGAATAATGCTTTTTACATTCATTGTGCTTATCTTCTTGAGTTCGAGTGTCGGTATTATCTTGACCTACATTCAGCTATCCGGTGAAGATCATGAATGGTGGTGGAGATCGATATTGTGCGGAGGATTCACAGCGGTGTTCATGTATGGGTATGGAGTATTGTTCTATCTCAGGTCAGACATGACTGGATTTCTGCAGCTGAGCTTTTACTTAGGATACACTGCTTTGTTATGTTACGCCCTCTTCTTGGTTCTTGGAACCATAAGTTTCTTGGCTTCTTTGATGTTTATTCGCCACATCTATCGTTCTGTCAAGCTTGAATAA

Protein Analysis

508

Amino Acids

58.63

Weight (kDa)

9.13

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 51 - 529 1.1e-141 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 1086
AccB1I GGYRCC 2 cut(s) 1086, 1155
AciI CCGC 3 cut(s) 1044, 1323, 1337
AclWI GGATC 3 cut(s) 281, 841, 854
AcsI RAATTY 2 cut(s) 23, 1068
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 407
AfaI GTAC 8 cut(s) 131, 248, 398, 585, 649, 752, 1088, 1128
AfiI CCNNNNNNNGG 5 cut(s) 151, 152, 808, 856, 1450
AgeI ACCGGT 1 cut(s) 695
AgsI TTSAA 6 cut(s) 125, 238, 335, 973, 1034, 1523
AjnI CCWGG 2 cut(s) 86, 1201
AleI CACNNNNGTG 1 cut(s) 1337
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 3 cut(s) 281, 841, 854
Ama87I CYCGRG 2 cut(s) 402, 1062
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 2 cut(s) 920, 1399
ApoI RAATTY 2 cut(s) 23, 1068
AsiGI ACCGGT 1 cut(s) 695
Asp718I GGTACC 1 cut(s) 1086
AspLEI GCGC 1 cut(s) 510
AsuC2I CCSGG 2 cut(s) 403, 404
AsuHPI GGTGA 2 cut(s) 685, 1298
AvaI CYCGRG 2 cut(s) 402, 1062
BamHI GGATCC 1 cut(s) 846
BanI GGYRCC 2 cut(s) 1086, 1155
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 907, 1411
BccI CCATC 2 cut(s) 519, 1048
BciT130I CCWGG 2 cut(s) 88, 1203
BciVI GTATCC 1 cut(s) 1412
BcnI CCSGG 2 cut(s) 403, 404
BcoDI GTCTC 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 1397
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 1412
BisI GCNGC 2 cut(s) 921, 1400
BlpI GCTNAGC 1 cut(s) 1403
BlsI GCNGC 2 cut(s) 922, 1401
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 4 cut(s) 88, 403, 404, 1203
BmeT110I CYCGRG 2 cut(s) 402, 1062
BmiI GGNNCC 5 cut(s) 848, 861, 1088, 1157, 1462
BmrFI CCNGG 4 cut(s) 88, 403, 404, 1203
Bpu1102I GCTNAGC 1 cut(s) 1403
BpuEI CTTGAG 3 cut(s) 93, 500, 1261
BpuMI CCSGG 2 cut(s) 403, 404
Bsa29I ATCGAT 1 cut(s) 1313
BsaBI GATNNNNATC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 402, 608
BsaWI WCCGGW 3 cut(s) 695, 856, 1283
BsaXI ACNNNNNCTCC 4 cut(s) 820, 850, 1110, 1140
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 152, 808, 856, 1450
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 649, 1393
Bse8I GATNNNNATC 1 cut(s) 70
BseBI CCWGG 2 cut(s) 88, 1203
BseCI ATCGAT 1 cut(s) 1313
BseDI CCNNGG 2 cut(s) 402, 608
BseGI GGATG 2 cut(s) 415, 1040
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 5 cut(s) 151, 152, 808, 856, 1450
BseMII CTCAG 5 cut(s) 312, 369, 665, 1387, 1394
BseNI ACTGG 2 cut(s) 649, 1393
BseRI GAGGAG 1 cut(s) 1011
BseXI GCAGC 2 cut(s) 907, 1411
BseYI CCCAGC 1 cut(s) 842
BsgI GTGCAG 2 cut(s) 906, 1158
BshFI GGCC 1 cut(s) 689
BshNI GGYRCC 2 cut(s) 1086, 1155
BshTI ACCGGT 1 cut(s) 695
BshVI ATCGAT 1 cut(s) 1313
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 402, 1062
BsiSI CCGG 5 cut(s) 58, 403, 696, 857, 1284
BslI CCNNNNNNNGG 5 cut(s) 151, 152, 808, 856, 1450
BsmAI GTCTC 1 cut(s) 374
BsmI GAATGC 1 cut(s) 729
BsnI GGCC 1 cut(s) 689
BsoBI CYCGRG 2 cut(s) 402, 1062
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 2 cut(s) 246, 750
Bsp143I GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
Bsp1720I GCTNAGC 1 cut(s) 1403
BspACI CCGC 3 cut(s) 1044, 1323, 1337
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 5 cut(s) 313, 370, 664, 1386, 1395
BspDI ATCGAT 1 cut(s) 1313
BspHI TCATGA 1 cut(s) 1294
BspLI GGNNCC 5 cut(s) 848, 861, 1088, 1157, 1462
BspMAI CTGCAG 1 cut(s) 1401
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 3 cut(s) 281, 841, 854
BspT107I GGYRCC 2 cut(s) 1086, 1155
BsrFI RCCGGY 1 cut(s) 695
BsrGI TGTACA 2 cut(s) 246, 750
BsrI ACTGG 2 cut(s) 649, 1393
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 402, 608
BssMI GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
BssNI GRCGYC 1 cut(s) 407
Bst2UI CCWGG 2 cut(s) 88, 1203
Bst4CI ACNGT 4 cut(s) 278, 466, 895, 1091
Bst6I CTCTTC 4 cut(s) 56, 506, 549, 1451
BstACI GRCGYC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 920
BstAUI TGTACA 2 cut(s) 246, 750
BstC8I GCNNGC 2 cut(s) 623, 1171
BstDEI CTNAG 9 cut(s) 207, 321, 378, 527, 637, 651, 1373, 1403, 1414
BstEII GGTNACC 1 cut(s) 1007
BstF5I GGATG 2 cut(s) 415, 1040
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 6 cut(s) 142, 273, 289, 849, 1294, 1313
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
BstMWI GCNNNNNNNGC 2 cut(s) 680, 920
BstNI CCWGG 2 cut(s) 88, 1203
BstPI GGTNACC 1 cut(s) 1007
BstSCI CCNGG 4 cut(s) 86, 401, 402, 1201
BstSFI CTRYAG 1 cut(s) 1397
BstV1I GCAGC 2 cut(s) 907, 1411
BstX2I RGATCY 1 cut(s) 846
BstXI CCANNNNNNTGG 1 cut(s) 1083
BstYI RGATCY 1 cut(s) 846
Bsu15I ATCGAT 1 cut(s) 1313
BsuI GTATCC 1 cut(s) 1412
BsuRI GGCC 1 cut(s) 689
BsuTUI ATCGAT 1 cut(s) 1313
BtsCI GGATG 2 cut(s) 415, 1040
BtsI GCAGTG 1 cut(s) 1422
BtsIMutI CAGTG 4 cut(s) 318, 891, 1141, 1422
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 2 cut(s) 623, 1171
CciI TCATGA 1 cut(s) 1294
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 695
Cfr9I CCCGGG 1 cut(s) 402
ClaI ATCGAT 1 cut(s) 1313
CseI GACGC 1 cut(s) 396
Csp6I GTAC 8 cut(s) 130, 247, 397, 584, 648, 751, 1087, 1127
CspAI ACCGGT 1 cut(s) 695
CviAII CATG 6 cut(s) 505, 748, 988, 1295, 1345, 1384
CviQI GTAC 8 cut(s) 130, 247, 397, 584, 648, 751, 1087, 1127
DdeI CTNAG 9 cut(s) 207, 321, 378, 527, 637, 651, 1373, 1403, 1414
DpnI GATC 6 cut(s) 141, 272, 288, 848, 1293, 1312
DpnII GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
Eam1104I CTCTTC 4 cut(s) 56, 506, 549, 1451
EarI CTCTTC 4 cut(s) 56, 506, 549, 1451
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 402, 1062
Eco91I GGTNACC 1 cut(s) 1007
EcoICRI GAGCTC 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 1007
EcoRII CCWGG 2 cut(s) 86, 1201
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 6 cut(s) 508, 751, 991, 1298, 1348, 1387
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 6 cut(s) 504, 747, 987, 1294, 1344, 1383
Fnu4HI GCNGC 2 cut(s) 921, 1400
FokI GGATG 2 cut(s) 402, 1027
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 921, 1400
GlaI GCGC 1 cut(s) 509
GluI GCNGC 2 cut(s) 921, 1400
GsaI CCCAGC 1 cut(s) 846
HaeIII GGCC 1 cut(s) 689
HapII CCGG 5 cut(s) 58, 403, 696, 857, 1284
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 510
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 6 cut(s) 508, 751, 991, 1298, 1348, 1387
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 2 cut(s) 1171, 1517
HinfI GANTC 3 cut(s) 358, 433, 1329
HpaII CCGG 5 cut(s) 58, 403, 696, 857, 1284
HphI GGTGA 2 cut(s) 685, 1298
Hpy166II GTNNAC 2 cut(s) 732, 753
Hpy188I TCNGA 9 cut(s) 95, 291, 313, 363, 370, 379, 545, 612, 1381
Hpy188III TCNNGA 7 cut(s) 110, 517, 664, 1148, 1240, 1264, 1295
Hpy8I GTNNAC 2 cut(s) 732, 753
Hpy99I CGWCG 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 4 cut(s) 278, 466, 895, 1091
HpyCH4V TGCA 7 cut(s) 254, 632, 683, 923, 1139, 1169, 1399
HpyF10VI GCNNNNNNNGC 2 cut(s) 680, 920
HpyF3I CTNAG 9 cut(s) 207, 321, 378, 527, 637, 651, 1373, 1403, 1414
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 6 cut(s) 508, 751, 991, 1298, 1348, 1387
HspAI GCGC 1 cut(s) 508
KpnI GGTACC 1 cut(s) 1090
Kzo9I GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
Lsp1109I GCAGC 2 cut(s) 907, 1411
MaeIII GTNAC 5 cut(s) 224, 533, 776, 1007, 1436
MalI GATC 6 cut(s) 141, 272, 288, 848, 1293, 1312
MboI GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
MflI RGATCY 1 cut(s) 846
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 23, 335, 480, 803, 900, 1068, 1081
MmeI TCCRAC 2 cut(s) 142, 554
MseI TTAA 5 cut(s) 68, 230, 479, 1050, 1185
MslI CAYNNNNRTG 2 cut(s) 591, 1337
MspA1I CMGCKG 5 cut(s) 621, 920, 1046, 1337, 1402
MspI CCGG 5 cut(s) 58, 403, 696, 857, 1284
MspR9I CCNGG 4 cut(s) 88, 403, 404, 1203
Mva1269I GAATGC 1 cut(s) 729
MvaI CCWGG 2 cut(s) 88, 1203
MwoI GCNNNNNNNGC 2 cut(s) 680, 920
NciI CCSGG 2 cut(s) 403, 404
NdeII GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
NlaIII CATG 6 cut(s) 508, 751, 991, 1298, 1348, 1387
NlaIV GGNNCC 5 cut(s) 848, 861, 1088, 1157, 1462
NmuCI GTSAC 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 1337
PagI TCATGA 1 cut(s) 1294
PctI GAATGC 1 cut(s) 729
PfeI GAWTC 3 cut(s) 358, 433, 1329
PinAI ACCGGT 1 cut(s) 695
PkrI GCNGC 2 cut(s) 922, 1401
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 86, 1201
PspEI GGTNACC 1 cut(s) 1007
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 86, 1201
PspN4I GGNNCC 5 cut(s) 848, 861, 1088, 1157, 1462
PstI CTGCAG 1 cut(s) 1401
PsuI RGATCY 1 cut(s) 846
PvuII CAGCTG 3 cut(s) 621, 920, 1402
RsaI GTAC 8 cut(s) 131, 248, 398, 585, 649, 752, 1088, 1128
RsaNI GTAC 8 cut(s) 130, 247, 397, 584, 648, 751, 1087, 1127
RseI CAYNNNNRTG 2 cut(s) 591, 1337
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 68, 230, 479, 1050, 1185
SatI GCNGC 2 cut(s) 921, 1400
Sau3AI GATC 6 cut(s) 139, 270, 286, 846, 1291, 1310
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 4 cut(s) 88, 403, 404, 1203
SduI GDGCHC 1 cut(s) 8
SfcI CTRYAG 1 cut(s) 1397
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 591, 1337
SmlI CTYRAG 3 cut(s) 108, 515, 1240
SmoI CTYRAG 3 cut(s) 108, 515, 1240
Sse9I AATT 7 cut(s) 23, 335, 480, 803, 900, 1068, 1081
SsiI CCGC 3 cut(s) 1044, 1323, 1337
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 86, 401, 402, 1201
TaaI ACNGT 4 cut(s) 278, 466, 895, 1091
TaqI TCGA 7 cut(s) 74, 458, 601, 807, 1149, 1247, 1313
TasI AATT 7 cut(s) 23, 335, 480, 803, 900, 1068, 1081
TatI WGTACW 4 cut(s) 129, 246, 396, 750
TfiI GAWTC 3 cut(s) 358, 433, 1329
Tru1I TTAA 5 cut(s) 68, 230, 479, 1050, 1185
Tru9I TTAA 5 cut(s) 68, 230, 479, 1050, 1185
TscAI CASTG 4 cut(s) 325, 898, 1141, 1429
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 920, 1399
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 9 cut(s) 404, 404, 493, 537, 564, 859, 1213, 1311, 1333
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 4 cut(s) 325, 898, 1141, 1429
XapI RAATTY 2 cut(s) 23, 1068
XcmI CCANNNNNNNNNTGG 2 cut(s) 1080, 1471
XmaI CCCGGG 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.