Rroxscaffold_1G00036530

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
53268560 .. 53273165
4606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036530.1

Sequence Viewer

Length: 1398 bp
ATGTATTATGATGATCTTCCATTGTGGGGATTTGTCGGGAAGGTTGAAGCTGAGAGTATGAGTCTCAGTGAGAAGGGAACCAAGTATTATCTATTCACACACTTGCTGTTTGATGCTCTTTACAATGGAAACCAAGTAATAGAAATACGTGCTTTTAGTGATCCAGAGCATGTTGTTGATATAACAGAAGATGTTGATATTGACATTGAGTTCACTTATTCAGTTAGCTGGAATGCAACATCAACTCAATTTCAGAAAAGGATGGAGAAATACTCAAAGGCTTCACTATTGCCAGTCCGCCAGAAAATTCATTGGTTCTCATTCATCAACTCGGTTGTTATCATTGTGCTTTTGATGGGATTGCTTACCTTGCTTATTATGCGACGCCTCAAGAATGACCTGAGAAAATGCTTAAATGGTGATGAAGAAGAAGACAAAGAAGTTGGTTGGAAATACCTTCATGGTGATGTTTTCAGACACCCTTCAAACATACCACTGTTTTGTGCCGTCTTGGGCTTGGGTACCCAGCTGCTTACCATGGTGTGCATCTTATTTCTGTTAGCATGTTTTGGAGTCCTCTATCCCTACAATCGTGGAGCACTACTCACTTCTCTTGTCTTCATCTATACTCTTACTTCTATGGTTGCCGGCTACAGTGCTGCTGCTTTTCACAATCAATTTTCTGTGACCGGATGGGAAAGGAGTGTTCTACTAACAGGGATTCTCTACTTGGCCCCATTCTTCGTGATGGTGTCTTTCCTTAATACAGTAGCTATATCCTATGGGGCCACGGCTGCACTTCCTTTTGGAACCATCCTAGTGATTCTTATCATATATGCATTTCTTGCCATCCCATTGCTTGGTTTGGGTGGGCTGATTGGATACTGTCTACGGTCTGAATTTCAAGCGCCTTGTGCTACAAAGCAAATTCCAAGAGAGATTCCATCATTAGCTTGGTATAGAAGAACTCCTTGTCAAATGTTTATTGGAGGTCTCTTGCCTTTTAGTGCAATTGCCCTTCAGTTACACCACCTGTATGCAAGCATGTGGGGCTATAAAATCTACACTCTTCCTGGAATTCTGTTTGTTACATTTATCATCCTCATCGTACTGACTGCAATCTTGACTATTGGTTTGACGTATATTCAACTTTCAGTTGAAGACCATGAGTGGTGGTGGAGGTCCGTGTTGTGTGGGGGATCTACGGCTATTTTCATGTTTGCCTATAGCATTTATTTCTACGTCAGATCAAACATGACCGGTTTCTTGCAACTATCCTTCTTTATTGGCTATAATGCTAGCATATGCTATGCATTCTTCTTGATGCTTGGTACAATTAGTTTCCGGGTTTCCTCGGTATTTGTTCGCCATATTTATGGTGCTGTTAAAAGTGAATGA

Protein Analysis

465

Amino Acids

52.72

Weight (kDa)

7.12

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 1 - 422 4.8e-131 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 860
AccI GTMKAC 1 cut(s) 889
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 155, 1207
AcsI RAATTY 4 cut(s) 306, 899, 927, 1077
AcuI CTGAAG 1 cut(s) 1004
AcyI GRCGYC 1 cut(s) 385
AfaI GTAC 3 cut(s) 523, 1110, 1333
AfiI CCNNNNNNNGG 2 cut(s) 26, 860
AgeI ACCGGT 1 cut(s) 1259
AgsI TTSAA 5 cut(s) 47, 486, 905, 1148, 1160
AjnI CCWGG 1 cut(s) 1072
AluBI AGCT 5 cut(s) 50, 228, 529, 773, 953
AluI AGCT 5 cut(s) 50, 228, 529, 773, 953
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 2 cut(s) 68, 998
AlwI GGATC 2 cut(s) 155, 1207
AoxI GGCC 2 cut(s) 732, 786
ApeKI GCWGC 4 cut(s) 529, 659, 662, 794
ApoI RAATTY 4 cut(s) 306, 899, 927, 1077
ArsI GACNNNNNNTTYG 2 cut(s) 1117, 1149
AsiGI ACCGGT 1 cut(s) 1259
Asp718I GGTACC 1 cut(s) 521
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 3 cut(s) 733, 786, 1182
AsuC2I CCSGG 1 cut(s) 1346
AsuHPI GGTGA 2 cut(s) 431, 476
AsuNHI GCTAGC 1 cut(s) 1298
AvaII GGWCC 1 cut(s) 1182
BanI GGYRCC 1 cut(s) 521
BbsI GAAGAC 3 cut(s) 438, 610, 1167
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 4 cut(s) 516, 646, 649, 781
BccI CCATC 7 cut(s) 256, 349, 687, 742, 821, 857, 952
BceAI ACGGC 3 cut(s) 491, 807, 1221
BciT130I CCWGG 1 cut(s) 1074
BciVI GTATCC 1 cut(s) 875
BcnI CCSGG 1 cut(s) 1346
BcoDI GTCTC 2 cut(s) 68, 998
BfaI CTAG 2 cut(s) 818, 1299
BfmI CTRYAG 2 cut(s) 652, 1225
BfoI RGCGCY 1 cut(s) 911
BfuI GTATCC 1 cut(s) 875
BisI GCNGC 4 cut(s) 530, 660, 663, 795
BlsI GCNGC 4 cut(s) 531, 661, 664, 796
Bme1390I CCNGG 2 cut(s) 1074, 1346
Bme18I GGWCC 1 cut(s) 1182
BmgT120I GGNCC 3 cut(s) 733, 786, 1182
BmiI GGNNCC 5 cut(s) 79, 523, 735, 787, 811
BmrFI CCNGG 2 cut(s) 1074, 1346
BmsI GCATC 3 cut(s) 103, 555, 1314
BmtI GCTAGC 1 cut(s) 1302
BpiI GAAGAC 3 cut(s) 438, 610, 1167
BplI GAGNNNNNCTC 4 cut(s) 257, 289, 588, 620
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 1346
BsaAI YACGTR 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 3 cut(s) 537, 789, 1353
BsaWI WCCGGW 2 cut(s) 689, 1259
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 860
Bse118I RCCGGY 2 cut(s) 647, 1259
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 854
Bse8I GATNNNNATC 1 cut(s) 827
BseBI CCWGG 1 cut(s) 1074
BseDI CCNNGG 3 cut(s) 537, 789, 1353
BseGI GGATG 5 cut(s) 267, 698, 813, 849, 1098
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 2 cut(s) 26, 860
BseMI GCAATG 1 cut(s) 854
BseMII CTCAG 3 cut(s) 42, 79, 392
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 4 cut(s) 516, 646, 649, 781
BseYI CCCAGC 1 cut(s) 525
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 2 cut(s) 734, 788
BshNI GGYRCC 1 cut(s) 521
BshTI ACCGGT 1 cut(s) 1259
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 4 cut(s) 648, 690, 1260, 1345
BslI CCNNNNNNNGG 2 cut(s) 26, 860
BsmAI GTCTC 2 cut(s) 68, 998
BsmI GAATGC 2 cut(s) 238, 1313
BsnI GGCC 2 cut(s) 734, 788
Bso31I GGTCTC 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 4 cut(s) 13, 160, 1199, 1247
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 1 cut(s) 298
BspANI GGCC 2 cut(s) 734, 788
BspCNI CTCAG 3 cut(s) 43, 78, 393
BspLI GGNNCC 5 cut(s) 79, 523, 735, 787, 811
BspOI GCTAGC 1 cut(s) 1302
BspPI GGATC 2 cut(s) 155, 1207
BspT107I GGYRCC 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 998
BsrDI GCAATG 1 cut(s) 854
BsrFI RCCGGY 2 cut(s) 647, 1259
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 2 cut(s) 647, 1259
BssECI CCNNGG 3 cut(s) 537, 789, 1353
BssMI GATC 4 cut(s) 13, 160, 1199, 1247
BssNI GRCGYC 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 1074
Bst4CI ACNGT 5 cut(s) 498, 656, 769, 887, 894
Bst6I CTCTTC 1 cut(s) 1074
BstACI GRCGYC 1 cut(s) 385
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 649, 1042, 1300
BstDEI CTNAG 3 cut(s) 51, 65, 401
BstDSI CCRYGG 2 cut(s) 537, 789
BstF5I GGATG 5 cut(s) 267, 698, 813, 849, 1098
BstH2I RGCGCY 1 cut(s) 911
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 4 cut(s) 16, 163, 1202, 1250
BstMAI GTCTC 2 cut(s) 68, 998
BstMBI GATC 4 cut(s) 13, 160, 1199, 1247
BstMWI GCNNNNNNNGC 6 cut(s) 370, 379, 794, 845, 914, 1050
BstNI CCWGG 1 cut(s) 1074
BstNSI RCATGY 3 cut(s) 173, 567, 1048
BstSCI CCNGG 2 cut(s) 1072, 1344
BstSFI CTRYAG 2 cut(s) 652, 1225
BstV1I GCAGC 4 cut(s) 516, 646, 649, 781
BstV2I GAAGAC 3 cut(s) 438, 610, 1167
BstX2I RGATCY 1 cut(s) 1199
BstXI CCANNNNNNTGG 1 cut(s) 1376
BstYI RGATCY 1 cut(s) 1199
BsuI GTATCC 1 cut(s) 875
BsuRI GGCC 2 cut(s) 734, 788
BtgI CCRYGG 2 cut(s) 537, 789
BtsCI GGATG 5 cut(s) 267, 698, 813, 849, 1098
BtsIMutI CAGTG 3 cut(s) 73, 494, 661
Cac8I GCNNGC 3 cut(s) 649, 1042, 1300
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 2 cut(s) 647, 1259
Cfr13I GGNCC 3 cut(s) 733, 786, 1182
CseI GACGC 1 cut(s) 393
Csp6I GTAC 3 cut(s) 522, 1109, 1332
CspAI ACCGGT 1 cut(s) 1259
CviAII CATG 8 cut(s) 170, 461, 538, 564, 1045, 1166, 1216, 1255
CviQI GTAC 3 cut(s) 522, 1109, 1332
DdeI CTNAG 3 cut(s) 51, 65, 401
DpnI GATC 4 cut(s) 15, 162, 1201, 1249
DpnII GATC 4 cut(s) 13, 160, 1199, 1247
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 998
Eco47I GGWCC 1 cut(s) 1182
Eco57I CTGAAG 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 1077
EcoRII CCWGG 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 537
EcoT22I ATGCAT 2 cut(s) 841, 1315
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 8 cut(s) 173, 464, 541, 567, 1048, 1169, 1219, 1258
FalI AAGNNNNNCTT 2 cut(s) 955, 987
FatI CATG 8 cut(s) 169, 460, 537, 563, 1044, 1165, 1215, 1254
FauNDI CATATG 1 cut(s) 1304
FblI GTMKAC 1 cut(s) 889
Fnu4HI GCNGC 4 cut(s) 530, 660, 663, 795
FokI GGATG 5 cut(s) 274, 705, 800, 836, 1085
Fsp4HI GCNGC 4 cut(s) 530, 660, 663, 795
FspBI CTAG 2 cut(s) 818, 1299
GlaI GCGC 1 cut(s) 909
GluI GCNGC 4 cut(s) 530, 660, 663, 795
GsaI CCCAGC 1 cut(s) 529
HaeII RGCGCY 1 cut(s) 911
HaeIII GGCC 2 cut(s) 734, 788
HapII CCGG 4 cut(s) 648, 690, 1260, 1345
HgaI GACGC 1 cut(s) 393
HhaI GCGC 1 cut(s) 910
Hin1I GRCGYC 1 cut(s) 385
Hin1II CATG 8 cut(s) 173, 464, 541, 567, 1048, 1169, 1219, 1258
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HinfI GANTC 5 cut(s) 61, 573, 721, 823, 940
HpaII CCGG 4 cut(s) 648, 690, 1260, 1345
HphI GGTGA 2 cut(s) 431, 476
Hpy166II GTNNAC 2 cut(s) 213, 890
Hpy188I TCNGA 4 cut(s) 255, 476, 898, 1247
Hpy188III TCNNGA 6 cut(s) 37, 164, 391, 745, 1123, 1321
Hpy8I GTNNAC 2 cut(s) 213, 890
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 6 cut(s) 34, 67, 467, 492, 1028, 1288
HpyCH4III ACNGT 5 cut(s) 498, 656, 769, 887, 894
HpyCH4IV ACGT 3 cut(s) 148, 1139, 1242
HpyCH4V TGCA 9 cut(s) 236, 546, 797, 839, 1010, 1040, 1118, 1270, 1313
HpyF10VI GCNNNNNNNGC 6 cut(s) 370, 379, 794, 845, 914, 1050
HpyF3I CTNAG 3 cut(s) 51, 65, 401
HpySE526I ACGT 3 cut(s) 148, 1139, 1242
Hsp92I GRCGYC 1 cut(s) 385
Hsp92II CATG 8 cut(s) 173, 464, 541, 567, 1048, 1169, 1219, 1258
HspAI GCGC 1 cut(s) 908
KpnI GGTACC 1 cut(s) 525
KroI GCCGGC 1 cut(s) 647
KroNI GCCGGC 1 cut(s) 649
Kzo9I GATC 4 cut(s) 13, 160, 1199, 1247
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 4 cut(s) 516, 646, 649, 781
LweI GCATC 3 cut(s) 103, 555, 1314
MaeI CTAG 2 cut(s) 818, 1299
MaeII ACGT 3 cut(s) 148, 1139, 1242
MaeIII GTNAC 3 cut(s) 685, 1023, 1087
MalI GATC 4 cut(s) 15, 162, 1201, 1249
MboI GATC 4 cut(s) 13, 160, 1199, 1247
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 1 cut(s) 1199
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 8 cut(s) 248, 306, 677, 899, 927, 1011, 1077, 1335
MlyI GAGTC 2 cut(s) 70, 582
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 6 cut(s) 398, 587, 983, 1112, 1173, 1363
Mph1103I ATGCAT 2 cut(s) 841, 1315
MroNI GCCGGC 1 cut(s) 647
MseI TTAA 3 cut(s) 413, 762, 1386
MslI CAYNNNNRTG 4 cut(s) 465, 818, 1035, 1374
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 4 cut(s) 648, 690, 1260, 1345
MspR9I CCNGG 2 cut(s) 1074, 1346
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 2 cut(s) 238, 1313
MvaI CCWGG 1 cut(s) 1074
MwoI GCNNNNNNNGC 6 cut(s) 370, 379, 794, 845, 914, 1050
NaeI GCCGGC 1 cut(s) 649
NciI CCSGG 1 cut(s) 1346
NcoI CCATGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 1304
NdeII GATC 4 cut(s) 13, 160, 1199, 1247
NgoMIV GCCGGC 1 cut(s) 647
NheI GCTAGC 1 cut(s) 1298
NlaIII CATG 8 cut(s) 173, 464, 541, 567, 1048, 1169, 1219, 1258
NlaIV GGNNCC 5 cut(s) 79, 523, 735, 787, 811
NmuCI GTSAC 1 cut(s) 685
NsiI ATGCAT 2 cut(s) 841, 1315
NspI RCATGY 3 cut(s) 173, 567, 1048
PctI GAATGC 2 cut(s) 238, 1313
PdiI GCCGGC 1 cut(s) 649
PfeI GAWTC 3 cut(s) 721, 823, 940
PflMI CCANNNNNTGG 1 cut(s) 860
PfoI TCCNGGA 1 cut(s) 1072
PinAI ACCGGT 1 cut(s) 1259
PkrI GCNGC 4 cut(s) 531, 661, 664, 796
PleI GAGTC 2 cut(s) 69, 581
PpsI GAGTC 2 cut(s) 69, 581
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 1072
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 1 cut(s) 1072
PspN4I GGNNCC 5 cut(s) 79, 523, 735, 787, 811
PspPI GGNCC 3 cut(s) 733, 786, 1182
PsuI RGATCY 1 cut(s) 1199
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 3 cut(s) 523, 1110, 1333
RsaNI GTAC 3 cut(s) 522, 1109, 1332
RseI CAYNNNNRTG 4 cut(s) 465, 818, 1035, 1374
SaqAI TTAA 3 cut(s) 413, 762, 1386
SatI GCNGC 4 cut(s) 530, 660, 663, 795
Sau3AI GATC 4 cut(s) 13, 160, 1199, 1247
Sau96I GGNCC 3 cut(s) 733, 786, 1182
SchI GAGTC 2 cut(s) 70, 582
ScrFI CCNGG 2 cut(s) 1074, 1346
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 3 cut(s) 103, 555, 1314
SfcI CTRYAG 2 cut(s) 652, 1225
SinI GGWCC 1 cut(s) 1182
SmiMI CAYNNNNRTG 4 cut(s) 465, 818, 1035, 1374
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 8 cut(s) 248, 306, 677, 899, 927, 1011, 1077, 1335
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 818, 1299
StyD4I CCNGG 2 cut(s) 1072, 1344
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 5 cut(s) 498, 656, 769, 887, 894
TaiI ACGT 3 cut(s) 151, 1142, 1245
TasI AATT 8 cut(s) 248, 306, 677, 899, 927, 1011, 1077, 1335
TfiI GAWTC 3 cut(s) 721, 823, 940
Tru1I TTAA 3 cut(s) 413, 762, 1386
Tru9I TTAA 3 cut(s) 413, 762, 1386
TscAI CASTG 3 cut(s) 73, 501, 661
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 4 cut(s) 529, 659, 662, 794
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 6 cut(s) 299, 313, 438, 449, 610, 1204
TspGWI ACGGA 1 cut(s) 1174
TspRI CASTG 3 cut(s) 73, 501, 661
Van91I CCANNNNNTGG 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 1182
XapI RAATTY 4 cut(s) 306, 899, 927, 1077
XceI RCATGY 3 cut(s) 173, 567, 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 951
XmiI GTMKAC 1 cut(s) 889
XspI CTAG 2 cut(s) 818, 1299
Zsp2I ATGCAT 2 cut(s) 841, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.