Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008677

Physical Location & Seq

Genomic Coordinates Reverse (-)

2864839 .. 2866363

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGCACTGAAGCTTTTGAAATGAGTCTTGTATTGGTGCTCTTGACTATCCTTACATTCTCAGCAACATCTTCAGCCACCGATCATATCTACAATGTAGGAGACAATGTCCCCTTGTTCGTCAACAAAATCGGTCCTTTGAACAACCCCAGCGAGACCTATCAGTACTATGATTTGCCTTTCTGCCTTCTAGATCCAGTAATTCAAAAGAAAGAATCCATTGGGGAAGTTTTGTGTGGTGATCGTTTGACCAACAGTTTATATCAGTTGAATTTCAGGCAGAACAAAAATGAGGAGAGACTGGGCCAGAAGAAGCTTAGAGTTCGAAGTTCTGAAGTTCAGGGATGCTATCCTTATTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

5.33

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	53 - 108	2e-10	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08350 AT1G08350 AT1G08350 AT1G08350
fragaria_vesca	FvH4_3g24860 FvH4_3g24860 FvH4_3g24860
prunus_persica	Prupe.6G129500_v2.0.a1 Prupe.6G129500_v2.0.a1
pyrus_communis	pycom11g13620
rosa_chinensis	RchiOBHm_Chr5g0044441
rosa_laevigata	RLG00000034275
rosa_multiflora	Rmu_sc0007129.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036530 Rroxscaffold_3G00244750
rosa_rugosa	Rorug05G0214400 Rorug05G0341800
rosa_samantha	Rh1CG017200 Rh5AG298700 Rh5BG305800 Rh5CG333000 Rh5DG315100
rosa_wichuraiana	Rw5G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	3 cut(s)	30, 57, 354
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	20, 142, 206, 271
AluBI	AGCT	2 cut(s)	14, 316
AluI	AGCT	2 cut(s)	14, 316
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	96, 149, 292
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	134, 304
AsuHPI	GGTGA	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	96, 149, 292
BfaI	CTAG	1 cut(s)	191
BmcAI	AGTACT	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 304
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	325
BsaI	GGTCTC	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse1I	ACTGG	2 cut(s)	197, 306
BseGI	GGATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	197, 306
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	96, 149, 292
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	3 cut(s)	82, 193, 241
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	197, 306
BssMI	GATC	3 cut(s)	82, 193, 241
Bst4CI	ACNGT	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	61, 317
BstF5I	GGATG	1 cut(s)	350
BstKTI	GATC	3 cut(s)	85, 196, 244
BstMAI	GTCTC	3 cut(s)	96, 149, 292
BstMBI	GATC	3 cut(s)	82, 193, 241
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	134, 304
Csp6I	GTAC	1 cut(s)	166
CviJI	RGCY	4 cut(s)	14, 77, 306, 316
CviKI_1	RGCY	4 cut(s)	14, 77, 306, 316
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	61, 317
DpnI	GATC	3 cut(s)	84, 195, 243
DpnII	GATC	3 cut(s)	82, 193, 241
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	30, 57, 354
FaiI	YATR	3 cut(s)	87, 171, 262
FaqI	GGGAC	1 cut(s)	95
FokI	GGATG	1 cut(s)	357
FspBI	CTAG	1 cut(s)	191
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	12, 314
HinfI	GANTC	2 cut(s)	25, 215
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	43, 191
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	257
HpyF3I	CTNAG	2 cut(s)	61, 317
Kzo9I	GATC	3 cut(s)	82, 193, 241
LpnPI	CCDG	6 cut(s)	163, 210, 262, 287, 320, 326
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	191
MalI	GATC	3 cut(s)	84, 195, 243
MboI	GATC	3 cut(s)	82, 193, 241
MboII	GAAGA	2 cut(s)	63, 322
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	2 cut(s)	201, 271
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	1 cut(s)	286
NdeII	GATC	3 cut(s)	82, 193, 241
NspV	TTCGAA	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	134, 304
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
Sau3AI	GATC	3 cut(s)	82, 193, 241
Sau96I	GGNCC	2 cut(s)	134, 304
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	2 cut(s)	8, 42
SetI	ASST	3 cut(s)	16, 161, 318
SfaNI	GCATC	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	1 cut(s)	134
Sse9I	AATT	2 cut(s)	201, 271
SspMI	CTAG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	325
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	201, 271
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	13
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	271
XbaI	TCTAGA	1 cut(s)	190
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.