Prupe.6G129500_v2.0.a1

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
10053440 .. 10058258
4819 bp
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UTR
Exon/CDS
Intron
Prupe.6G129500.1

Sequence Viewer

Length: 1779 bp
ATGGGTAACGAAGCCCTTCAAATGAGTCTCCCGCTAGTGCTCTTGACGATCCTTACATTCTCAGCTCTTTCAGCAACAGCTTCAGCGAGCGATCGCAGCTACAATGTAGGAGATCATGTTCCCTTGTTCGTCAACAAAGTTGGCCCCTTGAACAACCCCAGTGAGACCTATCAATACTATGATTTGCCATTCTGCTGCCCAGATCCAGTAATCCAAAAGAAAGAATCCATTGGGGAAGTTTTGAATGGTGATCGTTTGGCCAACACCTTATATCAGTTGAATTTCAGGCAGGACAAAAATGGGGAGAGCTTGTGCCAGAAAAAGCTTAAAGTTGCTGAAGTTGCGAAATTTAGGGATGCTATTGTTAATGATTTTTACTTCCAGATGTATTATGATGATCTTCCAGTGTGGGGGTTCATTGGGAAAGTTGAAGATGAGAGTTGGACTATTAGTGACAAGGGGACCAAGTATTATCTATTCAAACATGTGCTGTTTGATGTTTTTTACAATGGGAACCAAATAATAGAAATACGTGCTTTTAGTGATCCAAATCATGTTGCTGATATAACAGAAGATGTTGATATTGACGTTGAGTTCACTTATTCGGTTAAATGGAATGCAACATCTATTCAGTTCCAGAACAGGATGGACAGATACTCAAAGGCCTCATTACTGCCAGTCCGCCTGAAAATTCATTGGTTCTCATTTATTAACTCCATTGTCATCATTGTGCTTTTGATGGGATTGCTTACCTTGCTAATAATGCGACGCCTCAAGAATGACCTGAGAAAGTGCTCTAATGATGAAGAAGAAGACAAGGAGGTTGGTTGGAAATACATTCACGGTGATGTTTTCAGATATCCATCCAACATGCCCCTGTTTTGTGCTGTCTTGGGTGTGGGTACCCAACTGCTCATCATGGTCTGCATCTTATTTTTTCTGTCATTTTTTGGAGTCCTCTATCCCTACAATCGTGGAGCTCTGTTCACTTCTCTTGTCTTTATATGTACTCTTACCTCAATTGTCGCTGGATACACTGCTGCTGCTTTCCACACTCAATTTTCTGTAATTGGATGGGAGAGGAGTGTTCTTCTAACAGCGATTCTCTACCTGGGCCCATTGTTTGTGACATCGTCTATCCTTAATACAGTTGCTATATCTTATGGGGCAACAGCTGCAATACCTTTTGGCACCCTCCTAGCAATTCTTCTTATATATGCATTTCTTGCCATTCCATTGCTTGCCTTAGGTGGGGTGATTGGATATTGTTTAAGGTCTGAATTTCAAGCACCTTGTGCTACAAAGCAATTTCCAAGAGAGATCCAACGATTAGCTTGGTACAGGAGAACACATTGTCAAATGTTTATCGGTGGTCTATTGCCGTTTAGTGCAATTGCCCTTCAGTTACACCACCTGTATGCAAGCATGTGGGGCTATAAAATTTACACTCTACCTGGAATTTTGTTTCTTACGTTCATCATCCTCATCATAATGACTTCAATCTTGACTGTCGGTTTGACATACATTCAGCTTTCTGTTGAAGACCATGAATGGTGGTGGAGGTCAGTGTTGTCTGGGGGTTCAACGGCTATTTTTATGTTTGCCTATAGCATTTACTTCTATGCCAGATCAAACATGACGGGTTTCATGCAACTATCCTTCTTTATTGGCTATAATGCTTGCATGTGTTATGCGTTCTTCTTAATGCTTGGTGCCATTAGTTTCCGTGTTTCCTTGATATTTGTTCGCCATATATACGGTGCTGTTAAAAGTGAATGA

Protein Analysis

593

Amino Acids

67.34

Weight (kDa)

7.13

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 902
AccB1I GGYRCC 3 cut(s) 902, 1190, 1712
AciI CCGC 2 cut(s) 32, 682
AclWI GGATC 4 cut(s) 43, 197, 539, 1315
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 6 cut(s) 280, 347, 690, 1280, 1440, 1458
AcuI CTGAAG 3 cut(s) 66, 357, 1385
AcyI GRCGYC 1 cut(s) 769
AdeI CACNNNGTG 1 cut(s) 1295
AfaI GTAC 3 cut(s) 904, 1009, 1340
AfiI CCNNNNNNNGG 2 cut(s) 410, 1251
AflIII ACRYGT 1 cut(s) 484
AjnI CCWGG 2 cut(s) 1110, 1453
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AluBI AGCT 9 cut(s) 65, 80, 99, 309, 325, 980, 1175, 1334, 1531
AluI AGCT 9 cut(s) 65, 80, 99, 309, 325, 980, 1175, 1334, 1531
Alw21I GWGCWC 3 cut(s) 42, 797, 982
Alw26I GTCTC 2 cut(s) 32, 158
AlwI GGATC 4 cut(s) 43, 197, 539, 1315
AoxI GGCC 4 cut(s) 142, 258, 663, 1114
ApaI GGGCCC 1 cut(s) 1118
ApeKI GCWGC 5 cut(s) 96, 195, 1040, 1043, 1175
ApoI RAATTY 6 cut(s) 280, 347, 690, 1280, 1440, 1458
ArsI GACNNNNNNTTYG 2 cut(s) 1498, 1530
AsiSI GCGATCGC 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 902
AspS9I GGNCC 4 cut(s) 143, 462, 1114, 1115
AsuHPI GGTGA 3 cut(s) 260, 857, 1267
AvaII GGWCC 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 1246
BaeGI GKGCMC 1 cut(s) 1118
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 3 cut(s) 902, 1190, 1712
BanII GRGCYC 2 cut(s) 982, 1118
BbsI GAAGAC 2 cut(s) 819, 1548
Bbv12I GWGCWC 3 cut(s) 42, 797, 982
BbvI GCAGC 5 cut(s) 108, 182, 1027, 1030, 1162
BccI CCATC 4 cut(s) 640, 733, 871, 1068
BceAI ACGGC 2 cut(s) 1366, 1602
BciT130I CCWGG 2 cut(s) 1112, 1455
BciVI GTATCC 1 cut(s) 1025
BcoDI GTCTC 2 cut(s) 32, 158
BfaI CTAG 2 cut(s) 35, 1199
BfmI CTRYAG 1 cut(s) 1606
BfuI GTATCC 1 cut(s) 1025
BisI GCNGC 5 cut(s) 97, 196, 1041, 1044, 1176
BlsI GCNGC 5 cut(s) 98, 197, 1042, 1045, 1177
Bme1390I CCNGG 2 cut(s) 1112, 1455
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 4 cut(s) 143, 462, 1114, 1115
BmiI GGNNCC 7 cut(s) 145, 463, 515, 904, 1116, 1192, 1714
BmrFI CCNGG 2 cut(s) 1112, 1455
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 346, 936
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 819, 1548
BpuEI CTTGAG 1 cut(s) 758
BsaAI YACGTR 1 cut(s) 533
BsaBI GATNNNNATC 2 cut(s) 549, 862
BsaHI GRCGYC 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 1111
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 1251
Bse1I ACTGG 4 cut(s) 159, 206, 404, 677
Bse21I CCTNAGG 1 cut(s) 1246
Bse3DI GCAATG 1 cut(s) 1235
Bse8I GATNNNNATC 2 cut(s) 549, 862
BseBI CCWGG 2 cut(s) 1112, 1455
BseDI CCNNGG 1 cut(s) 1111
BseGI GGATG 5 cut(s) 361, 651, 863, 1079, 1479
BseJI GATNNNNATC 2 cut(s) 549, 862
BseLI CCNNNNNNNGG 2 cut(s) 410, 1251
BseMI GCAATG 1 cut(s) 1235
BseMII CTCAG 2 cut(s) 75, 776
BseNI ACTGG 4 cut(s) 159, 206, 404, 677
BseRI GAGGAG 1 cut(s) 1096
BseSI GKGCMC 1 cut(s) 1118
BseXI GCAGC 5 cut(s) 108, 182, 1027, 1030, 1162
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 144, 260, 665, 1116
BshNI GGYRCC 3 cut(s) 902, 1190, 1712
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 3 cut(s) 42, 797, 982
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 2 cut(s) 410, 1251
BsmAI GTCTC 2 cut(s) 32, 158
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 4 cut(s) 144, 260, 665, 1116
Bso31I GGTCTC 1 cut(s) 158
Bsp120I GGGCCC 1 cut(s) 1114
Bsp1286I GDGCHC 4 cut(s) 42, 797, 982, 1118
Bsp143I GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
BspACI CCGC 2 cut(s) 32, 682
BspANI GGCC 4 cut(s) 144, 260, 665, 1116
BspCNI CTCAG 2 cut(s) 74, 777
BspLI GGNNCC 7 cut(s) 145, 463, 515, 904, 1116, 1192, 1714
BspPI GGATC 4 cut(s) 43, 197, 539, 1315
BspT107I GGYRCC 3 cut(s) 902, 1190, 1712
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1235
BsrI ACTGG 4 cut(s) 159, 206, 404, 677
BssECI CCNNGG 1 cut(s) 1111
BssMI GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
BssNI GRCGYC 1 cut(s) 769
Bst2UI CCWGG 2 cut(s) 1112, 1455
Bst4CI ACNGT 4 cut(s) 845, 1150, 1510, 1760
BstACI GRCGYC 1 cut(s) 769
BstAPI GCANNNNNTGC 3 cut(s) 1175, 1226, 1295
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 88, 1242, 1423, 1681
BstDEI CTNAG 3 cut(s) 61, 785, 1246
BstF5I GGATG 5 cut(s) 361, 651, 863, 1079, 1479
BstKTI GATC 9 cut(s) 51, 94, 115, 205, 253, 400, 547, 1323, 1631
BstMAI GTCTC 2 cut(s) 32, 158
BstMBI GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 9 cut(s) 71, 96, 341, 754, 763, 1175, 1226, 1295, 1431
BstNI CCWGG 2 cut(s) 1112, 1455
BstNSI RCATGY 4 cut(s) 488, 874, 1429, 1687
BstSCI CCNGG 2 cut(s) 1110, 1453
BstSFI CTRYAG 1 cut(s) 1606
BstSLI GKGCMC 1 cut(s) 1118
BstV1I GCAGC 5 cut(s) 108, 182, 1027, 1030, 1162
BstV2I GAAGAC 2 cut(s) 819, 1548
BstX2I RGATCY 2 cut(s) 202, 1320
BstYI RGATCY 2 cut(s) 202, 1320
Bsu36I CCTNAGG 1 cut(s) 1246
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 4 cut(s) 144, 260, 665, 1116
BtsCI GGATG 5 cut(s) 361, 651, 863, 1079, 1479
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 4 cut(s) 166, 411, 1035, 1572
Cac8I GCNNGC 4 cut(s) 88, 1242, 1423, 1681
Cfr13I GGNCC 4 cut(s) 143, 462, 1114, 1115
CseI GACGC 1 cut(s) 777
Csp6I GTAC 3 cut(s) 903, 1008, 1339
CviQI GTAC 3 cut(s) 903, 1008, 1339
DdeI CTNAG 3 cut(s) 61, 785, 1246
DpnI GATC 9 cut(s) 50, 93, 114, 204, 252, 399, 546, 1322, 1630
DpnII GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
DraIII CACNNNGTG 1 cut(s) 1295
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 1 cut(s) 671
Ecl136II GAGCTC 1 cut(s) 980
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 2 cut(s) 982, 1118
Eco31I GGTCTC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 860
Eco47I GGWCC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 980
Eco57I CTGAAG 3 cut(s) 66, 357, 1385
Eco81I CCTNAGG 1 cut(s) 1246
EcoICRI GAGCTC 1 cut(s) 980
EcoRII CCWGG 2 cut(s) 1110, 1453
EcoRV GATATC 1 cut(s) 860
EcoT22I ATGCAT 1 cut(s) 1222
EcoT38I GRGCYC 2 cut(s) 982, 1118
FaqI GGGAC 1 cut(s) 475
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 5 cut(s) 97, 196, 1041, 1044, 1176
FokI GGATG 5 cut(s) 368, 658, 850, 1086, 1466
FriOI GRGCYC 2 cut(s) 982, 1118
Fsp4HI GCNGC 5 cut(s) 97, 196, 1041, 1044, 1176
FspBI CTAG 2 cut(s) 35, 1199
GluI GCNGC 5 cut(s) 97, 196, 1041, 1044, 1176
HaeIII GGCC 4 cut(s) 144, 260, 665, 1116
HgaI GACGC 1 cut(s) 777
Hin1I GRCGYC 1 cut(s) 769
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 4 cut(s) 25, 224, 954, 1102
HphI GGTGA 3 cut(s) 260, 857, 1267
Hpy166II GTNNAC 3 cut(s) 133, 597, 987
Hpy188I TCNGA 2 cut(s) 857, 1279
Hpy188III TCNNGA 5 cut(s) 43, 382, 637, 775, 1504
Hpy8I GTNNAC 3 cut(s) 133, 597, 987
Hpy99I CGWCG 1 cut(s) 771
HpyAV CCTTC 3 cut(s) 26, 1409, 1669
HpyCH4III ACNGT 4 cut(s) 845, 1150, 1510, 1760
HpyCH4IV ACGT 3 cut(s) 532, 588, 1472
HpyCH4V TGCA 8 cut(s) 620, 927, 1178, 1220, 1391, 1421, 1651, 1683
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 96, 341, 754, 763, 1175, 1226, 1295, 1431
HpyF3I CTNAG 3 cut(s) 61, 785, 1246
HpySE526I ACGT 3 cut(s) 532, 588, 1472
Hsp92I GRCGYC 1 cut(s) 769
KpnI GGTACC 1 cut(s) 906
Kzo9I GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
LmnI GCTCC 1 cut(s) 977
Lsp1109I GCAGC 5 cut(s) 108, 182, 1027, 1030, 1162
LweI GCATC 2 cut(s) 346, 936
MaeI CTAG 2 cut(s) 35, 1199
MaeII ACGT 3 cut(s) 532, 588, 1472
MaeIII GTNAC 4 cut(s) 5, 452, 1126, 1404
MalI GATC 9 cut(s) 50, 93, 114, 204, 252, 399, 546, 1322, 1630
MboI GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
MfeI CAATTG 2 cut(s) 1020, 1392
MflI RGATCY 2 cut(s) 202, 1320
MhlI GDGCHC 4 cut(s) 42, 797, 982, 1118
MlsI TGGCCA 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 2 cut(s) 34, 963
MmeI TCCRAC 4 cut(s) 422, 809, 891, 1348
MnlI CCTC 9 cut(s) 676, 782, 814, 968, 1027, 1074, 1205, 1493, 1554
Mox20I TGGCCA 1 cut(s) 260
Mph1103I ATGCAT 1 cut(s) 1222
MroXI GAANNNNTTC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 260
MseI TTAA 8 cut(s) 327, 366, 609, 711, 1143, 1271, 1703, 1767
MslI CAYNNNNRTG 4 cut(s) 728, 846, 1416, 1490
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 1175
MspR9I CCNGG 2 cut(s) 1112, 1455
MunI CAATTG 2 cut(s) 1020, 1392
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 2 cut(s) 1112, 1455
MwoI GCNNNNNNNGC 9 cut(s) 71, 96, 341, 754, 763, 1175, 1226, 1295, 1431
NdeII GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
NlaIV GGNNCC 7 cut(s) 145, 463, 515, 904, 1116, 1192, 1714
NmuCI GTSAC 2 cut(s) 452, 1126
NsiI ATGCAT 1 cut(s) 1222
NspI RCATGY 4 cut(s) 488, 874, 1429, 1687
PceI AGGCCT 1 cut(s) 665
PciI ACATGT 1 cut(s) 484
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 224, 1102
PflFI GACNNNGTC 1 cut(s) 1132
PkrI GCNGC 5 cut(s) 98, 197, 1042, 1045, 1177
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 2 cut(s) 33, 962
PpsI GAGTC 2 cut(s) 33, 962
Ppu21I YACGTR 1 cut(s) 533
PscI ACATGT 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 982
Psp6I CCWGG 2 cut(s) 1110, 1453
PspGI CCWGG 2 cut(s) 1110, 1453
PspN4I GGNNCC 7 cut(s) 145, 463, 515, 904, 1116, 1192, 1714
PspOMI GGGCCC 1 cut(s) 1114
PspPI GGNCC 4 cut(s) 143, 462, 1114, 1115
PsuI RGATCY 2 cut(s) 202, 1320
PsyI GACNNNGTC 1 cut(s) 1132
PvuI CGATCG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 1175
RgaI GCGATCGC 1 cut(s) 94
RsaI GTAC 3 cut(s) 904, 1009, 1340
RsaNI GTAC 3 cut(s) 903, 1008, 1339
RseI CAYNNNNRTG 4 cut(s) 728, 846, 1416, 1490
SacI GAGCTC 1 cut(s) 982
SaqAI TTAA 8 cut(s) 327, 366, 609, 711, 1143, 1271, 1703, 1767
SatI GCNGC 5 cut(s) 97, 196, 1041, 1044, 1176
Sau3AI GATC 9 cut(s) 48, 91, 112, 202, 250, 397, 544, 1320, 1628
Sau96I GGNCC 4 cut(s) 143, 462, 1114, 1115
SchI GAGTC 2 cut(s) 34, 963
ScrFI CCNGG 2 cut(s) 1112, 1455
SduI GDGCHC 4 cut(s) 42, 797, 982, 1118
SfaAI GCGATCGC 1 cut(s) 94
SfaNI GCATC 2 cut(s) 346, 936
SfcI CTRYAG 1 cut(s) 1606
SgfI GCGATCGC 1 cut(s) 94
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 4 cut(s) 728, 846, 1416, 1490
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SseBI AGGCCT 1 cut(s) 665
SsiI CCGC 2 cut(s) 32, 682
SspMI CTAG 2 cut(s) 35, 1199
SstI GAGCTC 1 cut(s) 982
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 2 cut(s) 1110, 1453
TaaI ACNGT 4 cut(s) 845, 1150, 1510, 1760
TaiI ACGT 3 cut(s) 535, 591, 1475
TatI WGTACW 1 cut(s) 1007
TfiI GAWTC 2 cut(s) 224, 1102
Tru1I TTAA 8 cut(s) 327, 366, 609, 711, 1143, 1271, 1703, 1767
Tru9I TTAA 8 cut(s) 327, 366, 609, 711, 1143, 1271, 1703, 1767
TscAI CASTG 4 cut(s) 166, 411, 1042, 1572
TseFI GTSAC 2 cut(s) 452, 1126
TseI GCWGC 5 cut(s) 96, 195, 1040, 1043, 1175
Tsp45I GTSAC 2 cut(s) 452, 1126
TspDTI ATGAA 6 cut(s) 406, 683, 819, 1465, 1563, 1636
TspGWI ACGGA 1 cut(s) 1715
TspRI CASTG 4 cut(s) 166, 411, 1042, 1572
Tth111I GACNNNGTC 1 cut(s) 1132
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 6 cut(s) 280, 347, 690, 1280, 1440, 1458
XceI RCATGY 4 cut(s) 488, 874, 1429, 1687
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 2 cut(s) 35, 1199
Zsp2I ATGCAT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.