Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008677

Physical Location & Seq

Genomic Coordinates Forward (+)

41790868 .. 41795378

Gene Structure 4511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0341800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGAGTATTGGACGCTGCCGCTGGAGGTTGGTTAGATAGAAACAGGCTTGTGGTGGTCTTAAGGGAGTTTTCACAGGTTTCCAGTTTTTTCACACAAGACTCAGAGCATGAAAATGCTGATGAGGTCTGTCAAGTGGCTAACAAAAGGCCACCAAGAGGTCCCGGCTTCAACGTGGAGGAGGATAAACTTCTTATAAGTGCTTGGTTGAATACTAGTATGGATTCAATACAAGGCAATGATCAAAAGCTGCATACTTTTTGGGGGGAAATTACAGAGTACTATCATCAATACAAGTCCTTTGACAGTGATCGTTCACAACCGATGTTGACACAACGGTGGGGAAAAATACAAAAGGTGGTGAACAAATTTTCAGGATGTTTTGCAGCTATAAATGAAAGACATGAAAGTGGGAAGACTGAACAAGACAAGATTGCAGATGCAAAGAAGATGTTTGAAGCACAAGAAAAGATTCGGTTCAATCTTGATCATGCTTGGATTTTGTTAAGGCACCAACCAAAGTGGATACAACTGATGCAAGAGCTGGACATCAAGAAAAGTAAGCCAAGATCTAAATCTTCTATAACTAATATCTCATCATCTTCAACTACAAGCACTCACATAGATATAGAAGAAGGCACGAACACTTGCTTTCCAATGTCTAGACCACCGGGTAAGAAGGCTGAGAAAAGAAAGCTGAAAGAAACCACTGATCAATTGGTGCAAATACAAAAATTACATCAAGAGAAAAAAGAAAGAGATGAAAAAAAACTGGAGATTATGAAGGAGAAAGTTGAAGTTGACAAGGAGAAACTGCGAGTTAGGAAACTTGAGGCTGAGAATAGGAAATTTGAGGCTGAGATGAAAATTATGTCTATGGATACATCAACTATGAATCCTGAGCAGAGGGCATATTATTCCAAACTTCAGATGAAAATTCTCCAAGGTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

318

Amino Acids

37.13

Weight (kDa)

8.98

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	160 - 313	2.4e-23	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0008677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08350 AT1G08350 AT1G08350 AT1G08350
fragaria_vesca	FvH4_3g24860 FvH4_3g24860 FvH4_3g24860
prunus_persica	Prupe.6G129500_v2.0.a1 Prupe.6G129500_v2.0.a1
pyrus_communis	pycom11g13620
rosa_chinensis	RchiOBHm_Chr5g0044441
rosa_laevigata	RLG00000034275
rosa_multiflora	Rmu_sc0007129.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036530 Rroxscaffold_3G00244750
rosa_rugosa	Rorug05G0214400 Rorug05G0341800
rosa_samantha	Rh1CG017200 Rh5AG298700 Rh5BG305800 Rh5CG333000 Rh5DG315100
rosa_wichuraiana	Rw5G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	510
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	3 cut(s)	368, 848, 936
AcuI	CTGAAG	1 cut(s)	911
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	61
AgsI	TTSAA	7 cut(s)	172, 211, 228, 458, 481, 606, 797
AhlI	ACTAGT	1 cut(s)	215
AleI	CACNNNNGTG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	250, 389, 544, 697
AluI	AGCT	4 cut(s)	250, 389, 544, 697
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	17, 250, 386
ApoI	RAATTY	3 cut(s)	368, 848, 936
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	165, 672
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	4, 237, 398
BciVI	GTATCC	2 cut(s)	519, 874
BclI	TGATCA	3 cut(s)	241, 487, 712
BcnI	CCSGG	2 cut(s)	165, 672
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	2 cut(s)	216, 663
BfrI	CTTAAG	1 cut(s)	61
BfuI	GTATCC	2 cut(s)	519, 874
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	4 cut(s)	18, 21, 251, 387
BlsI	GCNGC	4 cut(s)	19, 22, 252, 388
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	165, 672
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	163, 512
BmrFI	CCNGG	2 cut(s)	165, 672
BmsI	GCATC	2 cut(s)	430, 525
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	45, 794
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	2 cut(s)	165, 672
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	943
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	84, 777
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	943
BseGI	GGATG	1 cut(s)	383
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	5 cut(s)	117, 675, 828, 849, 891
BseNI	ACTGG	2 cut(s)	84, 777
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	4, 237, 398
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	165, 671
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	241, 310, 487, 569, 712
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	5 cut(s)	116, 676, 829, 850, 892
BspLI	GGNNCC	2 cut(s)	163, 512
BspT107I	GGYRCC	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	84, 777
BssECI	CCNNGG	1 cut(s)	943
BssMI	GATC	5 cut(s)	241, 310, 487, 569, 712
BssT1I	CCWWGG	1 cut(s)	943
Bst4CI	ACNGT	2 cut(s)	308, 339
BstAFI	CTTAAG	1 cut(s)	61
BstDEI	CTNAG	5 cut(s)	103, 684, 837, 858, 900
BstF5I	GGATG	1 cut(s)	383
BstKTI	GATC	5 cut(s)	244, 313, 490, 572, 715
BstMBI	GATC	5 cut(s)	241, 310, 487, 569, 712
BstSCI	CCNGG	2 cut(s)	163, 670
BstV1I	GCAGC	3 cut(s)	4, 237, 398
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuI	GTATCC	2 cut(s)	519, 874
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	313, 708
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CviAII	CATG	3 cut(s)	110, 404, 491
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	5 cut(s)	103, 684, 837, 858, 900
DpnI	GATC	5 cut(s)	243, 312, 489, 571, 714
DpnII	GATC	5 cut(s)	241, 310, 487, 569, 712
Eco130I	CCWWGG	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	911
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	943
FaeI	CATG	3 cut(s)	113, 407, 494
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	3 cut(s)	109, 403, 490
FbaI	TGATCA	3 cut(s)	241, 487, 712
Fnu4HI	GCNGC	4 cut(s)	18, 21, 251, 387
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	4 cut(s)	18, 21, 251, 387
FspBI	CTAG	2 cut(s)	216, 663
GluI	GCNGC	4 cut(s)	18, 21, 251, 387
GsuI	CTGGAG	2 cut(s)	45, 794
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	165, 671
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	113, 407, 494
HincII	GTYRAC	2 cut(s)	330, 802
HindII	GTYRAC	2 cut(s)	330, 802
HinfI	GANTC	4 cut(s)	101, 224, 472, 895
HpaII	CCGG	2 cut(s)	165, 671
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	4 cut(s)	317, 330, 364, 802
Hpy188I	TCNGA	2 cut(s)	106, 930
Hpy188III	TCNNGA	6 cut(s)	375, 485, 553, 663, 743, 899
Hpy8I	GTNNAC	4 cut(s)	317, 330, 364, 802
HpyAV	CCTTC	3 cut(s)	629, 673, 778
HpyCH4III	ACNGT	2 cut(s)	308, 339
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	6 cut(s)	253, 386, 437, 443, 538, 724
HpyF3I	CTNAG	5 cut(s)	103, 684, 837, 858, 900
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	113, 407, 494
Ksp22I	TGATCA	3 cut(s)	241, 487, 712
Kzo9I	GATC	5 cut(s)	241, 310, 487, 569, 712
Lsp1109I	GCAGC	3 cut(s)	4, 237, 398
LweI	GCATC	2 cut(s)	430, 525
MaeI	CTAG	2 cut(s)	216, 663
MaeII	ACGT	1 cut(s)	174
MalI	GATC	5 cut(s)	243, 312, 489, 571, 714
MboI	GATC	5 cut(s)	241, 310, 487, 569, 712
MboII	GAAGA	5 cut(s)	427, 460, 570, 594, 644
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	1 cut(s)	569
MluCI	AATT	7 cut(s)	270, 368, 716, 734, 848, 867, 936
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	20, 118, 152, 172, 175, 826, 847, 900
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	62, 506
MslI	CAYNNNNRTG	3 cut(s)	114, 337, 408
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	2 cut(s)	165, 671
MspR9I	CCNGG	2 cut(s)	165, 672
MunI	CAATTG	1 cut(s)	716
NciI	CCSGG	2 cut(s)	165, 672
NdeII	GATC	5 cut(s)	241, 310, 487, 569, 712
NlaIII	CATG	3 cut(s)	113, 407, 494
NlaIV	GGNNCC	2 cut(s)	163, 512
OliI	CACNNNNGTG	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	224, 472, 895
PkrI	GCNGC	4 cut(s)	19, 22, 252, 388
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	163, 512
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	3 cut(s)	114, 337, 408
SaqAI	TTAA	2 cut(s)	62, 506
SatI	GCNGC	4 cut(s)	18, 21, 251, 387
Sau3AI	GATC	5 cut(s)	241, 310, 487, 569, 712
Sau96I	GGNCC	1 cut(s)	161
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	165, 672
SfaNI	GCATC	2 cut(s)	430, 525
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	3 cut(s)	114, 337, 408
SmlI	CTYRAG	2 cut(s)	61, 830
SmoI	CTYRAG	2 cut(s)	61, 830
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	7 cut(s)	270, 368, 716, 734, 848, 867, 936
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	2 cut(s)	216, 663
StyD4I	CCNGG	2 cut(s)	163, 670
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	2 cut(s)	308, 339
TaiI	ACGT	1 cut(s)	177
TasI	AATT	7 cut(s)	270, 368, 716, 734, 848, 867, 936
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	3 cut(s)	224, 472, 895
Tru1I	TTAA	2 cut(s)	62, 506
Tru9I	TTAA	2 cut(s)	62, 506
TscAI	CASTG	2 cut(s)	313, 715
TseI	GCWGC	3 cut(s)	17, 250, 386
TspDTI	ATGAA	8 cut(s)	126, 411, 420, 777, 797, 878, 908, 947
TspRI	CASTG	2 cut(s)	313, 715
Vha464I	CTTAAG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	3 cut(s)	368, 848, 936
XbaI	TCTAGA	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	216, 663
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.