Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008677

Physical Location & Seq

Genomic Coordinates Forward (+)

13140991 .. 13145266

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGAGTCTCCTGGTGGTCCTCCTCACGATCCTTACATTCTCATTTCCTTCTGCGACAGCCTCAGCAAGCGATCACAGCTACAACGTAGGAGATCATGTCTCCTTCTTCGTCAACAAAGTTGGCCCCTTGAACAACCCCAGTGAGACCTATCATTACTATGATTTGCCATTCTGCTACCCAGATCTGGTAATCCAAAAGAAAGAATCCATTGGGGAAGTTTTGAATGGGGATCGTTTGGCCAACTCCTTATATCAGTTGAATTTCAGGCAATACAAAGCTGGAGAGAGTCTATGTCAGAAGAAGCTTAAAGTTGTTGAAATTGTGAAGTTCAGGGATGTTATCAGTAATGAATTTTACTTCCAGATGTATTATGATGATCTTCCAGTCTGGGGGTACATTGGGAAAGTTGAAGATGAGAGTTGGGAAAAGGGGACCAAGTATTATCTGTTCACACATTTGTCTTTTGATGTTCTTTACAATGGAAACCACGTAATAGAAATACATGCTTTTAGTGATCCAAATCATGCCGTTGATATAACAGAAGATGTTGATACTGACGTTGAGTTCACTTATTCGGTTAACTGGAATACCACATCAACTCAGTTCCAGAACAGGATGGACAAGTACTCAAAGGCTTCATTACTGCCAGTCCGCCAGAAAATTCATTGGTTCTCATTCATTAATTCCATTATCATCATTGTGCTTTTGATGGGATTGCTTACCTTGCTCATAATGCGACGCCTCAAAAATGATCTGAGAAAGTTCTCAAATAGCGATGAAGAAGAAGACAAGGAGGTTGGCTGGAAATACATTCATGGTGATGTTTTCAGATATCCTCCACACATGCCATTGTTTTGTGCTGTCTTGGGTGTGGGTACCCAACTGCTTGCCATGCTATTTATCTTATTTTTGCTAGCATTTTTTGGAGTCCTATATCCGTATAATCGTGGAGCTTTGTTCACTTCTCTCGTCTTTATATATACTCTTACTTCAATCATCTCTGGGTACACTGCTTCTGCCTTCCACAATCAATTTTCAGTGACAGGATGGGAAAGGAGTGTTCTTCTAACAGCTATTCTCTACCTGGGTCCATTGTTCGTAACATCGTCTATCCTTAATACAGTTGCTATATCTTATGGGGCAACAGCTGCCATTCCTTTTGGCACTCTTCTAGCAATTCTTCTCATATATGCATTCCTTGTCATCCCATTGCTTGCTTTTGGAGGGGTGATTGGTTATTGTATAAGATCTGAATTTCAAGCACCTTGTGCTATAAAGCAATATCCAAGAGAGATCCCACAATTAGCTTGGTACAGGAGAACCCCTTGTCAAATGTTTATTGGAGGAATTTTGTTTGTTACGTTTATCATCCTCATTATAATGACTGCAATCTTGACCGTCGGCTTGACATACATTCAGCTTTCTGTTGAAGACCATGAATGGTGGTGGAGGTCTGTGTTGTGTGGAGGATCAACAGCTATTTTTATGTTTGCGTATAGCATTTACTTCTATTCCAGATCAAAGATGACCGGTTTCATGCAGCTATCCTTCTTCATTGGATATAATGCTTGCATGTGTTATGCATTCTTCTTGATGCTCGGTGCCATTAGTTTCCGTGTTTCCTTGGTATTTGTTCGCCACATATACGGTGCTGTTAAAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

556

Amino Acids

63.5

Weight (kDa)

6.5

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08350 AT1G08350 AT1G08350 AT1G08350
fragaria_vesca	FvH4_3g24860 FvH4_3g24860 FvH4_3g24860
prunus_persica	Prupe.6G129500_v2.0.a1 Prupe.6G129500_v2.0.a1
pyrus_communis	pycom11g13620
rosa_chinensis	RchiOBHm_Chr5g0044441
rosa_laevigata	RLG00000034275
rosa_multiflora	Rmu_sc0007129.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036530 Rroxscaffold_3G00244750
rosa_rugosa	Rorug05G0214400 Rorug05G0341800
rosa_samantha	Rh1CG017200 Rh5AG298700 Rh5BG305800 Rh5CG333000 Rh5DG315100
rosa_wichuraiana	Rw5G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1379
Acc65I	GGTACC	1 cut(s)	875
AccB1I	GGYRCC	2 cut(s)	875, 1601
AciI	CCGC	1 cut(s)	652
AclWI	GGATC	5 cut(s)	22, 237, 509, 1288, 1477
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	5 cut(s)	259, 350, 660, 1253, 1347
AcyI	GRCGYC	1 cut(s)	739
AdeI	CACNNNGTG	1 cut(s)	1268
AfaI	GTAC	5 cut(s)	395, 626, 877, 1007, 1313
AfiI	CCNNNNNNNGG	2 cut(s)	184, 389
AgeI	ACCGGT	1 cut(s)	1529
AgsI	TTSAA	8 cut(s)	130, 223, 259, 317, 410, 993, 1259, 1430
AjnI	CCWGG	2 cut(s)	9, 1083
Alw26I	GTCTC	3 cut(s)	11, 103, 137
AlwI	GGATC	5 cut(s)	22, 237, 509, 1288, 1477
AoxI	GGCC	2 cut(s)	121, 237
ApeKI	GCWGC	2 cut(s)	1148, 1540
ApoI	RAATTY	5 cut(s)	259, 350, 660, 1253, 1347
AseI	ATTAAT	1 cut(s)	681
AsiGI	ACCGGT	1 cut(s)	1529
Asp718I	GGTACC	1 cut(s)	875
AspS9I	GGNCC	4 cut(s)	16, 122, 432, 1088
AsuHPI	GGTGA	2 cut(s)	830, 1240
AsuNHI	GCTAGC	1 cut(s)	913
AvaII	GGWCC	3 cut(s)	16, 432, 1088
BaeI	ACNNNNGTAYC	2 cut(s)	543, 576
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	2 cut(s)	875, 1601
BbsI	GAAGAC	2 cut(s)	792, 1437
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	1135, 1552
BccI	CCATC	3 cut(s)	610, 703, 1041
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	2 cut(s)	11, 1085
BcoDI	GTCTC	3 cut(s)	11, 103, 137
BfaI	CTAG	2 cut(s)	914, 1172
BglII	AGATCT	2 cut(s)	181, 1247
BisI	GCNGC	2 cut(s)	1149, 1541
BlsI	GCNGC	2 cut(s)	1150, 1542
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	2 cut(s)	11, 1085
Bme18I	GGWCC	3 cut(s)	16, 432, 1088
BmgT120I	GGNCC	4 cut(s)	16, 122, 432, 1088
BmiI	GGNNCC	5 cut(s)	124, 433, 877, 1089, 1603
BmrFI	CCNGG	2 cut(s)	11, 1085
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	1584
BmtI	GCTAGC	1 cut(s)	917
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	792, 1437
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	739
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	1084, 1623
BsaWI	WCCGGW	1 cut(s)	1529
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 389
Bse118I	RCCGGY	1 cut(s)	1529
Bse1I	ACTGG	4 cut(s)	138, 383, 587, 647
Bse3DI	GCAATG	1 cut(s)	1208
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	11, 1085
BseDI	CCNNGG	2 cut(s)	1084, 1623
BseGI	GGATG	5 cut(s)	340, 621, 1052, 1203, 1368
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	184, 389
BseMI	GCAATG	1 cut(s)	1208
BseMII	CTCAG	3 cut(s)	75, 614, 746
BseNI	ACTGG	4 cut(s)	138, 383, 587, 647
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	1135, 1552
BshFI	GGCC	2 cut(s)	123, 239
BshNI	GGYRCC	2 cut(s)	875, 1601
BshTI	ACCGGT	1 cut(s)	1529
BsiSI	CCGG	1 cut(s)	1530
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	184, 389
BsmAI	GTCTC	3 cut(s)	11, 103, 137
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	2 cut(s)	1193, 1583
BsnI	GGCC	2 cut(s)	123, 239
Bso31I	GGTCTC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	652
BspANI	GGCC	2 cut(s)	123, 239
BspCNI	CTCAG	3 cut(s)	74, 613, 747
BspLI	GGNNCC	5 cut(s)	124, 433, 877, 1089, 1603
BspOI	GCTAGC	1 cut(s)	917
BspPI	GGATC	5 cut(s)	22, 237, 509, 1288, 1477
BspT107I	GGYRCC	2 cut(s)	875, 1601
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	1208
BsrFI	RCCGGY	1 cut(s)	1529
BsrI	ACTGG	4 cut(s)	138, 383, 587, 647
BssAI	RCCGGY	1 cut(s)	1529
BssECI	CCNNGG	2 cut(s)	1084, 1623
BssNI	GRCGYC	1 cut(s)	739
BssT1I	CCWWGG	1 cut(s)	1623
Bst2UI	CCWGG	2 cut(s)	11, 1085
Bst4CI	ACNGT	3 cut(s)	1123, 1399, 1649
Bst6I	CTCTTC	1 cut(s)	1173
BstACI	GRCGYC	1 cut(s)	739
BstAPI	GCANNNNNTGC	2 cut(s)	1148, 1268
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	5 cut(s)	67, 888, 915, 1215, 1570
BstDEI	CTNAG	3 cut(s)	61, 600, 755
BstF5I	GGATG	5 cut(s)	340, 621, 1052, 1203, 1368
BstMAI	GTCTC	3 cut(s)	11, 103, 137
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 724, 733, 892, 1148, 1268
BstNI	CCWGG	2 cut(s)	11, 1085
BstNSI	RCATGY	3 cut(s)	506, 847, 1576
BstSCI	CCNGG	2 cut(s)	9, 1083
BstV1I	GCAGC	2 cut(s)	1135, 1552
BstV2I	GAAGAC	2 cut(s)	792, 1437
BstX2I	RGATCY	3 cut(s)	181, 1247, 1293
BstYI	RGATCY	3 cut(s)	181, 1247, 1293
BsuRI	GGCC	2 cut(s)	123, 239
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	5 cut(s)	340, 621, 1052, 1203, 1368
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	3 cut(s)	145, 1008, 1044
Cac8I	GCNNGC	5 cut(s)	67, 888, 915, 1215, 1570
Cfr10I	RCCGGY	1 cut(s)	1529
Cfr13I	GGNCC	4 cut(s)	16, 122, 432, 1088
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	5 cut(s)	394, 625, 876, 1006, 1312
CspAI	ACCGGT	1 cut(s)	1529
CviAII	CATG	9 cut(s)	95, 503, 524, 815, 844, 892, 1436, 1537, 1573
CviQI	GTAC	5 cut(s)	394, 625, 876, 1006, 1312
DdeI	CTNAG	3 cut(s)	61, 600, 755
DraIII	CACNNNGTG	1 cut(s)	1268
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
EciI	GGCGGA	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	1623
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	833
Eco47I	GGWCC	3 cut(s)	16, 432, 1088
EcoRII	CCWGG	2 cut(s)	9, 1083
EcoRV	GATATC	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	1623
EcoT22I	ATGCAT	2 cut(s)	1195, 1585
ErhI	CCWWGG	1 cut(s)	1623
FaeI	CATG	9 cut(s)	98, 506, 527, 818, 847, 895, 1439, 1540, 1576
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	9 cut(s)	94, 502, 523, 814, 843, 891, 1435, 1536, 1572
Fnu4HI	GCNGC	2 cut(s)	1149, 1541
FokI	GGATG	5 cut(s)	347, 628, 1059, 1190, 1355
Fsp4HI	GCNGC	2 cut(s)	1149, 1541
FspBI	CTAG	2 cut(s)	914, 1172
GluI	GCNGC	2 cut(s)	1149, 1541
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	123, 239
HapII	CCGG	1 cut(s)	1530
HgaI	GACGC	1 cut(s)	747
Hin1I	GRCGYC	1 cut(s)	739
Hin1II	CATG	9 cut(s)	98, 506, 527, 818, 847, 895, 1439, 1540, 1576
HincII	GTYRAC	2 cut(s)	112, 580
HindII	GTYRAC	2 cut(s)	112, 580
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	4, 203, 286, 927
HpaI	GTTAAC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	1530
HphI	GGTGA	2 cut(s)	830, 1240
Hpy166II	GTNNAC	6 cut(s)	112, 450, 567, 580, 960, 1008
Hpy188I	TCNGA	4 cut(s)	297, 756, 830, 1252
Hpy188III	TCNNGA	6 cut(s)	25, 361, 607, 1393, 1515, 1591
Hpy8I	GTNNAC	6 cut(s)	112, 450, 567, 580, 960, 1008
Hpy99I	CGWCG	2 cut(s)	741, 1403
HpyAV	CCTTC	4 cut(s)	57, 112, 1030, 1558
HpyCH4III	ACNGT	3 cut(s)	1123, 1399, 1649
HpyCH4IV	ACGT	4 cut(s)	84, 489, 558, 1361
HpyCH4V	TGCA	5 cut(s)	1193, 1388, 1540, 1572, 1583
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 724, 733, 892, 1148, 1268
HpyF3I	CTNAG	3 cut(s)	61, 600, 755
HpySE526I	ACGT	4 cut(s)	84, 489, 558, 1361
Hsp92I	GRCGYC	1 cut(s)	739
Hsp92II	CATG	9 cut(s)	98, 506, 527, 818, 847, 895, 1439, 1540, 1576
KpnI	GGTACC	1 cut(s)	879
KspAI	GTTAAC	1 cut(s)	580
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	2 cut(s)	1135, 1552
LweI	GCATC	1 cut(s)	1584
MaeI	CTAG	2 cut(s)	914, 1172
MaeII	ACGT	4 cut(s)	84, 489, 558, 1361
MaeIII	GTNAC	3 cut(s)	1039, 1099, 1357
MflI	RGATCY	3 cut(s)	181, 1247, 1293
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	3 cut(s)	13, 295, 936
Mox20I	TGGCCA	1 cut(s)	239
Mph1103I	ATGCAT	2 cut(s)	1195, 1585
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	5 cut(s)	306, 579, 681, 1116, 1656
MslI	CAYNNNNRTG	4 cut(s)	156, 698, 819, 1379
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	1148
MspI	CCGG	1 cut(s)	1530
MspR9I	CCNGG	2 cut(s)	11, 1085
Mva1269I	GAATGC	2 cut(s)	1193, 1583
MvaI	CCWGG	2 cut(s)	11, 1085
MwoI	GCNNNNNNNGC	6 cut(s)	75, 724, 733, 892, 1148, 1268
NheI	GCTAGC	1 cut(s)	913
NlaIII	CATG	9 cut(s)	98, 506, 527, 818, 847, 895, 1439, 1540, 1576
NlaIV	GGNNCC	5 cut(s)	124, 433, 877, 1089, 1603
NmuCI	GTSAC	1 cut(s)	1039
NsiI	ATGCAT	2 cut(s)	1195, 1585
NspI	RCATGY	3 cut(s)	506, 847, 1576
PctI	GAATGC	2 cut(s)	1193, 1583
PfeI	GAWTC	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	1529
PkrI	GCNGC	2 cut(s)	1150, 1542
PleI	GAGTC	3 cut(s)	12, 294, 935
PpsI	GAGTC	3 cut(s)	12, 294, 935
Ppu21I	YACGTR	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	1379
Psp6I	CCWGG	2 cut(s)	9, 1083
PspGI	CCWGG	2 cut(s)	9, 1083
PspN4I	GGNNCC	5 cut(s)	124, 433, 877, 1089, 1603
PspPI	GGNCC	4 cut(s)	16, 122, 432, 1088
PsrI	GAACNNNNNNTAC	2 cut(s)	431, 463
PsuI	RGATCY	3 cut(s)	181, 1247, 1293
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	5 cut(s)	395, 626, 877, 1007, 1313
RsaNI	GTAC	5 cut(s)	394, 625, 876, 1006, 1312
RseI	CAYNNNNRTG	4 cut(s)	156, 698, 819, 1379
SaqAI	TTAA	5 cut(s)	306, 579, 681, 1116, 1656
SatI	GCNGC	2 cut(s)	1149, 1541
Sau96I	GGNCC	4 cut(s)	16, 122, 432, 1088
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	3 cut(s)	13, 295, 936
ScrFI	CCNGG	2 cut(s)	11, 1085
SfaNI	GCATC	1 cut(s)	1584
SinI	GGWCC	3 cut(s)	16, 432, 1088
SmiMI	CAYNNNNRTG	4 cut(s)	156, 698, 819, 1379
SsiI	CCGC	1 cut(s)	652
SspMI	CTAG	2 cut(s)	914, 1172
StyD4I	CCNGG	2 cut(s)	9, 1083
StyI	CCWWGG	1 cut(s)	1623
TaaI	ACNGT	3 cut(s)	1123, 1399, 1649
TaiI	ACGT	4 cut(s)	87, 492, 561, 1364
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	5 cut(s)	306, 579, 681, 1116, 1656
Tru9I	TTAA	5 cut(s)	306, 579, 681, 1116, 1656
TscAI	CASTG	3 cut(s)	145, 1015, 1044
TseFI	GTSAC	1 cut(s)	1039
TseI	GCWGC	2 cut(s)	1148, 1540
Tsp45I	GTSAC	1 cut(s)	1039
TspDTI	ATGAA	9 cut(s)	363, 627, 653, 667, 792, 803, 1452, 1525, 1543
TspGWI	ACGGA	2 cut(s)	927, 1604
TspRI	CASTG	3 cut(s)	145, 1015, 1044
VpaK11BI	GGWCC	3 cut(s)	16, 432, 1088
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	5 cut(s)	259, 350, 660, 1253, 1347
XceI	RCATGY	3 cut(s)	506, 847, 1576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1305
XspI	CTAG	2 cut(s)	914, 1172
ZrmI	AGTACT	1 cut(s)	626
Zsp2I	ATGCAT	2 cut(s)	1195, 1585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.