AT1G08790

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017185
Physical Location & Seq
Forward (+)
2811989 .. 2812782
794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08790.1

Sequence Viewer

Length: 573 bp
ATGGTGAGGGTTGGAGAAGCATTGAGTGTATCAACCTCATCGTCGTCATCTTTCTACGACAGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCGAAAGCTAAGGCTAAGAAACGTCTCTCGAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGCCGTCGCCAGATGCTCCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGACGAGGACTTGAGTGAGCTCAAAGGATCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAAGGGCAACATCTTACAACTACATTGCCTGCATTGGACCTTTACTTCGCTGTGACTCGTCAGATCTCGCCGGTTTCTACACCAGGCAGTGGTGGATCTTCTTCATCCTCCCGTCCTACTTCCCTCGGAGACCGATCTTCCTCTTTTGGTAGTCCAATAAGCGACTCTGATTCTTTGAAGGTTATGTCTCCAGGAGATGATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCTGTGGCATGTTCTGTGATACAATCTTCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

190

Amino Acids

20.88

Weight (kDa)

5.97

Isoelectric Point (pI)

84.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 78 - 127 4.8e-22 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08790
fragaria_vesca FvH4_6g02671
malus_domestica MD04G1226100.v1.1 MD12G1243200.v1.1
prunus_persica Prupe.6G344900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450641
rosa_laevigata RLG00000025715
rosa_multiflora Rmu_sc0000078.1_g000040
rosa_rugosa Rorug02G0629200
rosa_samantha Rh3AG029900 Rh3BG030300 Rh3CG029200 Rh3DG030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AclWI GGATC 3 cut(s) 271, 400, 491
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 2 cut(s) 80, 475
AjnI CCWGG 2 cut(s) 379, 487
AluBI AGCT 4 cut(s) 76, 107, 256, 539
AluI AGCT 4 cut(s) 76, 107, 256, 539
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 6 cut(s) 128, 143, 153, 420, 489, 511
AlwI GGATC 3 cut(s) 271, 400, 491
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 16, 191
AvaII GGWCC 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 1 cut(s) 204
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 381, 489
BcoDI GTCTC 6 cut(s) 128, 143, 153, 420, 489, 511
BglII AGATCT 1 cut(s) 360
Bme1390I CCNGG 2 cut(s) 381, 489
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 381, 489
BmsI GCATC 2 cut(s) 75, 180
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 224, 268
BsaI GGTCTC 2 cut(s) 143, 420
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse118I RCCGGY 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 381, 489
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 512
BseRI GAGGAG 2 cut(s) 237, 308
BseSI GKGCMC 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 6 cut(s) 128, 143, 153, 420, 489, 511
BsmBI CGTCTC 1 cut(s) 128
Bso31I GGTCTC 2 cut(s) 143, 420
Bsp1286I GDGCHC 2 cut(s) 258, 535
Bsp143I GATC 5 cut(s) 263, 360, 392, 431, 496
BspCNI CTCAG 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 3 cut(s) 271, 400, 491
BspQI GCTCTTC 1 cut(s) 66
BspTNI GGTCTC 2 cut(s) 143, 420
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 5 cut(s) 263, 360, 392, 431, 496
Bst2UI CCWGG 2 cut(s) 381, 489
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 108, 114, 521
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 5 cut(s) 266, 363, 395, 434, 499
BstMAI GTCTC 6 cut(s) 128, 143, 153, 420, 489, 511
BstMBI GATC 5 cut(s) 263, 360, 392, 431, 496
BstNI CCWGG 2 cut(s) 381, 489
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 2 cut(s) 379, 487
BstSLI GKGCMC 1 cut(s) 535
BstX2I RGATCY 3 cut(s) 263, 360, 392
BstYI RGATCY 3 cut(s) 263, 360, 392
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 164
CviAII CATG 3 cut(s) 142, 168, 546
CviJI RGCY 5 cut(s) 76, 107, 113, 256, 539
CviKI_1 RGCY 5 cut(s) 76, 107, 113, 256, 539
DdeI CTNAG 3 cut(s) 108, 114, 521
DpnI GATC 5 cut(s) 265, 362, 394, 433, 498
DpnII GATC 5 cut(s) 263, 360, 392, 431, 496
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 2 cut(s) 143, 420
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 379, 487
EcoT38I GRGCYC 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 145, 171, 549
FaiI YATR 5 cut(s) 143, 169, 213, 482, 547
FatI CATG 3 cut(s) 141, 167, 545
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 471
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 164
Hin1II CATG 3 cut(s) 145, 171, 549
HinfI GANTC 3 cut(s) 352, 461, 467
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 16, 191
Hpy188I TCNGA 3 cut(s) 360, 425, 466
Hpy188III TCNNGA 1 cut(s) 127
Hpy99I CGWCG 3 cut(s) 46, 180, 186
HpyAV CCTTC 2 cut(s) 212, 469
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 108, 114, 521
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 145, 171, 549
Kzo9I GATC 5 cut(s) 263, 360, 392, 431, 496
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 3 cut(s) 172, 198, 295
LpnPI CCDG 8 cut(s) 200, 339, 366, 381, 393, 474, 491, 501
LweI GCATC 2 cut(s) 75, 180
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 349
MalI GATC 5 cut(s) 265, 362, 394, 433, 498
MboI GATC 5 cut(s) 263, 360, 392, 431, 496
MboII GAAGA 5 cut(s) 83, 387, 390, 426, 555
MflI RGATCY 3 cut(s) 263, 360, 392
MhlI GDGCHC 2 cut(s) 258, 535
MluCI AATT 1 cut(s) 568
MlyI GAGTC 2 cut(s) 346, 455
MnlI CCTC 9 cut(s) 46, 215, 235, 286, 415, 431, 448, 510, 516
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 3 cut(s) 288, 510, 571
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 381, 489
MvaI CCWGG 2 cut(s) 381, 489
NdeII GATC 5 cut(s) 263, 360, 392, 431, 496
NlaIII CATG 3 cut(s) 145, 171, 549
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 487
PleI GAGTC 2 cut(s) 346, 455
PpsI GAGTC 2 cut(s) 346, 455
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 379, 487
PspGI CCWGG 2 cut(s) 379, 487
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 3 cut(s) 263, 360, 392
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 288, 510, 571
Sau3AI GATC 5 cut(s) 263, 360, 392, 431, 496
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 2 cut(s) 346, 455
ScrFI CCNGG 2 cut(s) 381, 489
SduI GDGCHC 2 cut(s) 258, 535
SfaNI GCATC 2 cut(s) 75, 180
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 203, 247
SmoI CTYRAG 2 cut(s) 203, 247
Sse9I AATT 1 cut(s) 568
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 379, 487
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 128
TaqII GACCGA 1 cut(s) 444
TasI AATT 1 cut(s) 568
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 3 cut(s) 288, 510, 571
Tru9I TTAA 3 cut(s) 288, 510, 571
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 334
XceI RCATGY 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.