Rorug02G0629200

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017185
Physical Location & Seq
Forward (+)
74390068 .. 74397136
7069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0629200.1

Sequence Viewer

Length: 1014 bp
ATGTCGCTGGACGGAGTCCAGCCGTACCGAGACACCTTCCACTCGCTCATTTTGGGGTCCATGAAAGGGGCTCGGTTGCAGGACGCGTTCTACTTCTCGGAGCAGATGAAATCCATGGGTTTGGTTCCTGATGGAATGAATGTTGAAATTAACAATGCGATCTGCATCTGCTGGTATGCAATTGTCCGCGACATGACTGCTGCTGGTCTTGGGTTAAATAAGTTTTGCTATGCGGGACTTATAACTGCACTTAGGAACAAGACACCCTTACCAGATGATTATGCTGCCAAAATTATAGAGTTTGTGGAGCGGTCAAAAGAGTGGTCATCGGTTGAAGCTTCAAGTGAAACCGCTCAAAATGTAATGACGGGGGTAACAAAAGAGGAGTTGTATAACATGCCAACAGCTGAGTATGTTAATAGGCGTGGATTTTTTAATAGGCCGCTAACTGTGTATCATGTTGCATTTCATGCTTGTGCGGACCTACGAAATGTTGAGGTGATGGAAGCTCTTTTGGACATGCTAAAAAAGGATGGGAAATTTCCAGATACCTATATTGTGATTCAAACTATGAGATGCTACTTGAACTGCGGGGATATTGATCGTGGTTGGCAAACGCTTGATGAATATCTGAAGTCAGGAAGGCCTCCTGTACCGGAACTCTATAGTACACTTGCAGAGGGCGCCCTGATTGGCTATACTCCTAAGGGAATGCAAATTGCCCAAAAGGCATTGGAAGATATGAATTCCAGGAACTTTTACTTGCTCCTCCCAAGACAAGGGACTGATCTTCTCCTTGCAGCTGCCGGTGAAAAGACTGGAGGTTATACTACCGCAAACTATATATGGGACTTGATGCAAGCTCGTAAAGTAACTCCTCAACTTCCTGCAGTGGAAGCATATTACAATGGCTTGAAAGAACGTGAGATTCCCGCTGACGATCCACGACTTGTATTGGTTAAGCGTACTTATGAAAACCTTTCTTCGAGATTCAGAGGACGACGACCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

337

Amino Acids

38.11

Weight (kDa)

6.37

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08790
fragaria_vesca FvH4_6g02671
malus_domestica MD04G1226100.v1.1 MD12G1243200.v1.1
prunus_persica Prupe.6G344900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450641
rosa_laevigata RLG00000025715
rosa_multiflora Rmu_sc0000078.1_g000040
rosa_rugosa Rorug02G0629200
rosa_samantha Rh3AG029900 Rh3BG030300 Rh3CG029200 Rh3DG030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 683
AccBSI CCGCTC 2 cut(s) 310, 353
AccII CGCG 2 cut(s) 86, 189
AciI CCGC 9 cut(s) 187, 233, 310, 351, 443, 479, 591, 834, 933
AclWI GGATC 1 cut(s) 935
AcsI RAATTY 2 cut(s) 539, 745
AcuI CTGAAG 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 4 cut(s) 26, 654, 670, 967
AfiI CCNNNNNNNGG 2 cut(s) 66, 779
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 6 cut(s) 146, 335, 342, 566, 586, 916
AjnI CCWGG 1 cut(s) 749
AluBI AGCT 5 cut(s) 338, 407, 509, 803, 863
AluI AGCT 5 cut(s) 338, 407, 509, 803, 863
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 935
AoxI GGCC 2 cut(s) 440, 644
ApeKI GCWGC 4 cut(s) 200, 284, 800, 803
ApoI RAATTY 2 cut(s) 539, 745
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 2 cut(s) 57, 481
AsuHPI GGTGA 2 cut(s) 511, 821
AvaII GGWCC 2 cut(s) 57, 481
AxyI CCTNAGG 1 cut(s) 705
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 187, 271, 790, 812
BccI CCATC 3 cut(s) 125, 496, 527
BceAI ACGGC 1 cut(s) 7
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 751
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 664, 888
BfoI RGCGCY 1 cut(s) 687
BglI GCCNNNNNGGC 1 cut(s) 728
BisI GCNGC 5 cut(s) 201, 285, 443, 801, 804
BlsI GCNGC 5 cut(s) 202, 286, 444, 802, 805
Bme1390I CCNGG 1 cut(s) 751
Bme18I GGWCC 2 cut(s) 57, 481
BmgT120I GGNCC 2 cut(s) 57, 481
BmiI GGNNCC 3 cut(s) 58, 126, 685
BmrFI CCNGG 1 cut(s) 751
BmsI GCATC 3 cut(s) 174, 566, 846
BpmI CTGGAG 1 cut(s) 840
BsaBI GATNNNNATC 3 cut(s) 164, 600, 627
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 779
Bse118I RCCGGY 1 cut(s) 806
Bse1I ACTGG 1 cut(s) 823
Bse21I CCTNAGG 1 cut(s) 705
Bse8I GATNNNNATC 3 cut(s) 164, 600, 627
BseBI CCWGG 1 cut(s) 751
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 538
BseJI GATNNNNATC 3 cut(s) 164, 600, 627
BseLI CCNNNNNNNGG 2 cut(s) 66, 779
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 823
BseRI GAGGAG 3 cut(s) 398, 758, 867
BseXI GCAGC 4 cut(s) 187, 271, 790, 812
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 2 cut(s) 86, 189
BshFI GGCC 2 cut(s) 442, 646
BshNI GGYRCC 1 cut(s) 683
BsiSI CCGG 2 cut(s) 656, 807
BslFI GGGAC 3 cut(s) 249, 796, 863
BslI CCNNNNNNNGG 2 cut(s) 66, 779
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 3 cut(s) 249, 796, 863
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 2 cut(s) 442, 646
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 4 cut(s) 159, 601, 787, 940
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 9 cut(s) 187, 233, 310, 351, 443, 479, 591, 834, 933
BspANI GGCC 2 cut(s) 442, 646
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 2 cut(s) 86, 189
BspLI GGNNCC 3 cut(s) 58, 126, 685
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 1 cut(s) 935
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 2 cut(s) 310, 353
BsrFI RCCGGY 1 cut(s) 806
BsrI ACTGG 1 cut(s) 823
BssAI RCCGGY 1 cut(s) 806
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 159, 601, 787, 940
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 751
Bst4CI ACNGT 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 684
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 3 cut(s) 251, 408, 705
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 2 cut(s) 86, 189
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 4 cut(s) 162, 604, 790, 943
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 159, 601, 787, 940
BstMWI GCNNNNNNNGC 4 cut(s) 470, 683, 728, 896
BstNI CCWGG 1 cut(s) 751
BstNSI RCATGY 2 cut(s) 400, 523
BstSCI CCNGG 1 cut(s) 749
BstSFI CTRYAG 2 cut(s) 664, 888
BstUI CGCG 2 cut(s) 86, 189
BstV1I GCAGC 4 cut(s) 187, 271, 790, 812
BstXI CCANNNNNNTGG 1 cut(s) 121
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 2 cut(s) 442, 646
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 1 cut(s) 897
Cac8I GCNNGC 1 cut(s) 861
CfoI GCGC 1 cut(s) 686
Cfr10I RCCGGY 1 cut(s) 806
Cfr13I GGNCC 2 cut(s) 57, 481
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 25, 653, 669, 966
CviAII CATG 7 cut(s) 61, 115, 193, 397, 458, 470, 520
CviQI GTAC 4 cut(s) 25, 653, 669, 966
DdeI CTNAG 3 cut(s) 251, 408, 705
DinI GGCGCC 1 cut(s) 685
DpnI GATC 4 cut(s) 161, 603, 789, 942
DpnII GATC 4 cut(s) 159, 601, 787, 940
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 57, 481
Eco57I CTGAAG 1 cut(s) 653
Eco81I CCTNAGG 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 1 cut(s) 749
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 685
EheI GGCGCC 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 7 cut(s) 64, 118, 196, 400, 461, 473, 523
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 3 cut(s) 249, 796, 863
FatI CATG 7 cut(s) 60, 114, 192, 396, 457, 469, 519
FauI CCCGC 3 cut(s) 226, 584, 940
Fnu4HI GCNGC 5 cut(s) 201, 285, 443, 801, 804
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 5 cut(s) 201, 285, 443, 801, 804
GlaI GCGC 1 cut(s) 685
GluI GCNGC 5 cut(s) 201, 285, 443, 801, 804
GsuI CTGGAG 1 cut(s) 840
HaeII RGCGCY 1 cut(s) 687
HaeIII GGCC 2 cut(s) 442, 646
HapII CCGG 2 cut(s) 656, 807
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 7 cut(s) 64, 118, 196, 400, 461, 473, 523
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 4 cut(s) 15, 562, 928, 990
HpaII CCGG 2 cut(s) 656, 807
HphI GGTGA 2 cut(s) 511, 821
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 3 cut(s) 100, 633, 995
Hpy188III TCNNGA 4 cut(s) 128, 545, 639, 987
Hpy8I GTNNAC 1 cut(s) 671
Hpy99I CGWCG 1 cut(s) 1005
HpyAV CCTTC 2 cut(s) 46, 636
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 1 cut(s) 922
HpyF10VI GCNNNNNNNGC 4 cut(s) 470, 683, 728, 896
HpyF3I CTNAG 3 cut(s) 251, 408, 705
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 7 cut(s) 64, 118, 196, 400, 461, 473, 523
HspAI GCGC 1 cut(s) 684
KasI GGCGCC 1 cut(s) 683
Kzo9I GATC 4 cut(s) 159, 601, 787, 940
LmnI GCTCC 3 cut(s) 100, 307, 771
Lsp1109I GCAGC 4 cut(s) 187, 271, 790, 812
LweI GCATC 3 cut(s) 174, 566, 846
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 2 cut(s) 373, 871
MalI GATC 4 cut(s) 161, 603, 789, 942
MbiI CCGCTC 2 cut(s) 310, 353
MboI GATC 4 cut(s) 159, 601, 787, 940
MboII GAAGA 3 cut(s) 749, 782, 975
MfeI CAATTG 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 7 cut(s) 147, 180, 291, 539, 717, 745, 1009
MluI ACGCGT 1 cut(s) 84
Mly113I GGCGCC 1 cut(s) 684
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 8 cut(s) 376, 490, 657, 673, 779, 815, 888, 989
MseI TTAA 6 cut(s) 150, 215, 417, 435, 960, 1012
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 3 cut(s) 407, 803, 935
MspI CCGG 2 cut(s) 656, 807
MspR9I CCNGG 1 cut(s) 751
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 1 cut(s) 751
MvnI CGCG 2 cut(s) 86, 189
MwoI GCNNNNNNNGC 4 cut(s) 470, 683, 728, 896
NarI GGCGCC 1 cut(s) 684
NcoI CCATGG 1 cut(s) 114
NdeII GATC 4 cut(s) 159, 601, 787, 940
NlaIII CATG 7 cut(s) 64, 118, 196, 400, 461, 473, 523
NlaIV GGNNCC 3 cut(s) 58, 126, 685
NspI RCATGY 2 cut(s) 400, 523
PceI AGGCCT 1 cut(s) 646
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 562, 928, 990
PflFI GACNNNGTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 749
PkrI GCNGC 5 cut(s) 202, 286, 444, 802, 805
PleI GAGTC 1 cut(s) 23
PluTI GGCGCC 1 cut(s) 687
PpsI GAGTC 1 cut(s) 23
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 749
PspGI CCWGG 1 cut(s) 749
PspN4I GGNNCC 3 cut(s) 58, 126, 685
PspPI GGNCC 2 cut(s) 57, 481
PstI CTGCAG 1 cut(s) 892
PsyI GACNNNGTC 1 cut(s) 14
PvuII CAGCTG 2 cut(s) 407, 803
RsaI GTAC 4 cut(s) 26, 654, 670, 967
RsaNI GTAC 4 cut(s) 25, 653, 669, 966
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 6 cut(s) 150, 215, 417, 435, 960, 1012
SatI GCNGC 5 cut(s) 201, 285, 443, 801, 804
Sau3AI GATC 4 cut(s) 159, 601, 787, 940
Sau96I GGNCC 2 cut(s) 57, 481
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 751
SduI GDGCHC 1 cut(s) 73
SfaNI GCATC 3 cut(s) 174, 566, 846
SfcI CTRYAG 2 cut(s) 664, 888
SfoI GGCGCC 1 cut(s) 685
SinI GGWCC 2 cut(s) 57, 481
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 7 cut(s) 147, 180, 291, 539, 717, 745, 1009
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 9 cut(s) 187, 233, 310, 351, 443, 479, 591, 834, 933
SspDI GGCGCC 1 cut(s) 683
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 1 cut(s) 749
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 1 cut(s) 925
TaqI TCGA 1 cut(s) 986
TasI AATT 7 cut(s) 147, 180, 291, 539, 717, 745, 1009
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 3 cut(s) 562, 928, 990
Tru1I TTAA 6 cut(s) 150, 215, 417, 435, 960, 1012
Tru9I TTAA 6 cut(s) 150, 215, 417, 435, 960, 1012
TscAI CASTG 1 cut(s) 897
TseI GCWGC 4 cut(s) 200, 284, 800, 803
TspDTI ATGAA 7 cut(s) 77, 122, 152, 458, 639, 758, 987
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 897
Tth111I GACNNNGTC 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 57, 481
XapI RAATTY 2 cut(s) 539, 745
XceI RCATGY 2 cut(s) 400, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.