FvH4_6g02671

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017185
Physical Location & Seq
Forward (+)
1529884 .. 1531937
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02671.t1

Sequence Viewer

Length: 657 bp
ATGGACATGAACGACGTGGAGCAACAACCGCCGCCGGCGATTGTACCGTCGTCCCCGGAGTCATCACCGTGCCTGTCGCTTTCATCCTCCGCGGAGGAGCTGCAGCACATGCCGCTGGCACCGCCGAAGATGATGAGCCGAAAGAGGCTGTGCAAGCAGCTGTCCATGTGCGAGACGCCGCGTGACATTGCATGGGAGAAACGGCGGCGGCAGATTCTGAAGCAGGAGAGGAAGAGAAACGGGAACGGTGACTCCCCCGGCGCCGTTGCCGAGGAGCAAGAGGGAGACGATATGAACCTGACGGACGAGGACTTGCATGAGCTGAAAGGGTGTATAGAGCTAGGGTTTGGGTTCAATGAGGAAGAGGGTCAAAGGTTGTGCCCTACATTGCCGGCTCTTGACCTCTACTTTGCCGTCAACCGCCAGTTCTCTCCCAGTCCGCTCTCCTCGCCCAATAGCGGCCGACATTCCACGTCGTCAATGGGTGGTCCGACGTCGTCATTTGGTGGACTTTCATCGTCGTTTGGAAGCCCTAGCCCTAGGAGCGACAGTGATGGGTGGAAGATTTGCAGCCCAGGTGATAACCCTCAACAGGTGAAGACCAAATTGAGGCATTGGGCACAAGCCGTAGCTTGTTCAGTTATGCAATCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

219

Amino Acids

23.91

Weight (kDa)

5.45

Isoelectric Point (pI)

92.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 100 - 153 5.8e-25 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08790
fragaria_vesca FvH4_6g02671
malus_domestica MD04G1226100.v1.1 MD12G1243200.v1.1
prunus_persica Prupe.6G344900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450641
rosa_laevigata RLG00000025715
rosa_multiflora Rmu_sc0000078.1_g000040
rosa_rugosa Rorug02G0629200
rosa_samantha Rh3AG029900 Rh3BG030300 Rh3CG029200 Rh3DG030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AccB1I GGYRCC 2 cut(s) 118, 260
AccBSI CCGCTC 1 cut(s) 442
AccII CGCG 2 cut(s) 92, 181
AcoI YGGCCR 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 3 cut(s) 176, 261, 494
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 3 cut(s) 458, 592, 609
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 2 cut(s) 16, 474
AjnI CCWGG 1 cut(s) 574
AloI GAACNNNNNNTCC 2 cut(s) 236, 268
AluBI AGCT 5 cut(s) 100, 160, 322, 340, 632
AluI AGCT 5 cut(s) 100, 160, 322, 340, 632
Alw26I GTCTC 2 cut(s) 167, 279
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 4 cut(s) 100, 103, 157, 570
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspA2I CCTAGG 1 cut(s) 539
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 2 cut(s) 56, 258
AsuHPI GGTGA 4 cut(s) 57, 260, 590, 607
AvaII GGWCC 1 cut(s) 488
AvrII CCTAGG 1 cut(s) 539
BaeGI GKGCMC 2 cut(s) 383, 622
BanI GGYRCC 2 cut(s) 118, 260
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 4 cut(s) 87, 115, 169, 582
BccI CCATC 1 cut(s) 548
BceAI ACGGC 4 cut(s) 218, 248, 398, 611
BciT130I CCWGG 1 cut(s) 576
BcnI CCSGG 2 cut(s) 56, 258
BcoDI GTCTC 2 cut(s) 167, 279
BfaI CTAG 3 cut(s) 341, 534, 540
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 264
BlnI CCTAGG 1 cut(s) 539
Bme1390I CCNGG 3 cut(s) 56, 258, 576
Bme18I GGWCC 1 cut(s) 488
BmgBI CACGTC 2 cut(s) 16, 474
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 120, 262
BmrFI CCNGG 3 cut(s) 56, 258, 576
BmrI ACTGGG 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 605
BpuMI CCSGG 2 cut(s) 56, 258
BsaHI GRCGYC 3 cut(s) 176, 261, 494
BsaJI CCNNGG 6 cut(s) 54, 90, 256, 270, 539, 574
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 535, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 592, 609
Bse118I RCCGGY 2 cut(s) 34, 391
Bse1I ACTGG 2 cut(s) 424, 435
Bse3DI GCAATG 2 cut(s) 186, 386
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 6 cut(s) 54, 90, 256, 270, 539, 574
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 458, 592, 609
BseMI GCAATG 2 cut(s) 186, 386
BseNI ACTGG 2 cut(s) 424, 435
BseRI GAGGAG 3 cut(s) 110, 287, 436
BseSI GKGCMC 2 cut(s) 383, 622
BseX3I CGGCCG 1 cut(s) 460
BseXI GCAGC 4 cut(s) 87, 115, 169, 582
Bsh1236I CGCG 2 cut(s) 92, 181
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 1 cut(s) 462
BshNI GGYRCC 2 cut(s) 118, 260
BsiEI CGRYCG 1 cut(s) 463
BsiSI CCGG 4 cut(s) 35, 56, 258, 392
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 458, 592, 609
BsmAI GTCTC 2 cut(s) 167, 279
BsmBI CGTCTC 2 cut(s) 167, 279
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 383, 622
BspANI GGCC 1 cut(s) 462
BspFNI CGCG 2 cut(s) 92, 181
BspLI GGNNCC 2 cut(s) 120, 262
BspMAI CTGCAG 1 cut(s) 105
BspT107I GGYRCC 2 cut(s) 118, 260
BsrBI CCGCTC 1 cut(s) 442
BsrDI GCAATG 2 cut(s) 186, 386
BsrFI RCCGGY 2 cut(s) 34, 391
BsrI ACTGG 2 cut(s) 424, 435
BssAI RCCGGY 2 cut(s) 34, 391
BssECI CCNNGG 6 cut(s) 54, 90, 256, 270, 539, 574
BssNI GRCGYC 3 cut(s) 176, 261, 494
BssT1I CCWWGG 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 4 cut(s) 48, 69, 248, 551
Bst6I CTCTTC 2 cut(s) 227, 357
BstACI GRCGYC 3 cut(s) 176, 261, 494
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 4 cut(s) 36, 117, 155, 393
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 2 cut(s) 92, 181
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstMAI GTCTC 2 cut(s) 167, 279
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 7 cut(s) 28, 109, 112, 121, 154, 448, 543
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 54, 256, 574
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 2 cut(s) 383, 622
BstUI CGCG 2 cut(s) 92, 181
BstV1I GCAGC 4 cut(s) 87, 115, 169, 582
BstV2I GAAGAC 1 cut(s) 605
BstZI CGGCCG 1 cut(s) 460
BsuRI GGCC 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 2 cut(s) 16, 474
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 4 cut(s) 36, 117, 155, 393
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 2 cut(s) 34, 391
Cfr13I GGNCC 1 cut(s) 488
Cfr42I CCGCGG 1 cut(s) 93
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 44
CviAII CATG 5 cut(s) 7, 109, 166, 192, 317
CviQI GTAC 1 cut(s) 44
DinI GGCGCC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 460
EagI CGGCCG 1 cut(s) 460
Eam1104I CTCTTC 2 cut(s) 227, 357
EarI CTCTTC 2 cut(s) 227, 357
EclXI CGGCCG 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 488
Eco52I CGGCCG 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 539
EgeI GGCGCC 1 cut(s) 262
EheI GGCGCC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 539
Esp3I CGTCTC 2 cut(s) 167, 279
FaeI CATG 5 cut(s) 10, 112, 169, 195, 320
FaiI YATR 8 cut(s) 8, 110, 167, 193, 293, 318, 335, 644
FaqI GGGAC 1 cut(s) 37
FatI CATG 5 cut(s) 6, 108, 165, 191, 316
FokI GGATG 1 cut(s) 70
FspBI CTAG 3 cut(s) 341, 534, 540
GlaI GCGC 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 1 cut(s) 462
HapII CCGG 4 cut(s) 35, 56, 258, 392
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 3 cut(s) 176, 261, 494
Hin1II CATG 5 cut(s) 10, 112, 169, 195, 320
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 3 cut(s) 59, 214, 251
HpaII CCGG 4 cut(s) 35, 56, 258, 392
HphI GGTGA 4 cut(s) 57, 260, 590, 607
Hpy166II GTNNAC 2 cut(s) 418, 509
Hpy188I TCNGA 2 cut(s) 219, 492
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 2 cut(s) 418, 509
Hpy99I CGWCG 6 cut(s) 17, 52, 478, 496, 499, 523
HpyCH4III ACNGT 4 cut(s) 48, 69, 248, 551
HpyCH4IV ACGT 3 cut(s) 15, 473, 494
HpyCH4V TGCA 6 cut(s) 103, 153, 191, 316, 570, 646
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 109, 112, 121, 154, 448, 543
HpySE526I ACGT 3 cut(s) 15, 473, 494
Hsp92I GRCGYC 3 cut(s) 176, 261, 494
Hsp92II CATG 5 cut(s) 10, 112, 169, 195, 320
HspAI GCGC 1 cut(s) 261
KasI GGCGCC 1 cut(s) 260
KroI GCCGGC 2 cut(s) 34, 391
KroNI GCCGGC 2 cut(s) 36, 393
KspI CCGCGG 1 cut(s) 93
LmnI GCTCC 4 cut(s) 19, 97, 274, 543
Lsp1109I GCAGC 4 cut(s) 87, 115, 169, 582
MaeI CTAG 3 cut(s) 341, 534, 540
MaeII ACGT 3 cut(s) 15, 473, 494
MaeIII GTNAC 2 cut(s) 182, 248
MbiI CCGCTC 1 cut(s) 442
MboII GAAGA 5 cut(s) 139, 244, 374, 574, 610
MhlI GDGCHC 2 cut(s) 383, 622
MluCI AATT 1 cut(s) 605
Mly113I GGCGCC 1 cut(s) 261
MlyI GAGTC 2 cut(s) 68, 245
MmeI TCCRAC 1 cut(s) 515
MreI CGCCGGCG 1 cut(s) 34
MroNI GCCGGC 2 cut(s) 34, 391
MslI CAYNNNNRTG 1 cut(s) 67
MspA1I CMGCKG 3 cut(s) 92, 115, 160
MspI CCGG 4 cut(s) 35, 56, 258, 392
MspR9I CCNGG 3 cut(s) 56, 258, 576
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 2 cut(s) 92, 181
MwoI GCNNNNNNNGC 7 cut(s) 28, 109, 112, 121, 154, 448, 543
NaeI GCCGGC 2 cut(s) 36, 393
NarI GGCGCC 1 cut(s) 261
NciI CCSGG 2 cut(s) 56, 258
NgoMIV GCCGGC 2 cut(s) 34, 391
NlaIII CATG 5 cut(s) 10, 112, 169, 195, 320
NlaIV GGNNCC 2 cut(s) 120, 262
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 2 cut(s) 182, 248
NspI RCATGY 1 cut(s) 112
PdiI GCCGGC 2 cut(s) 36, 393
PfeI GAWTC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 496
PleI GAGTC 2 cut(s) 67, 245
PluTI GGCGCC 1 cut(s) 264
PpsI GAGTC 2 cut(s) 67, 245
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 120, 262
PspPI GGNCC 1 cut(s) 488
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 67
SacII CCGCGG 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 2 cut(s) 68, 245
ScrFI CCNGG 3 cut(s) 56, 258, 576
SduI GDGCHC 2 cut(s) 383, 622
SfcI CTRYAG 1 cut(s) 101
SfoI GGCGCC 1 cut(s) 262
Sfr303I CCGCGG 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 1 cut(s) 605
SspDI GGCGCC 1 cut(s) 260
SspMI CTAG 3 cut(s) 341, 534, 540
StyD4I CCNGG 3 cut(s) 54, 256, 574
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 4 cut(s) 48, 69, 248, 551
TaiI ACGT 3 cut(s) 18, 476, 497
TasI AATT 1 cut(s) 605
TauI GCSGC 6 cut(s) 34, 115, 181, 208, 211, 462
TfiI GAWTC 1 cut(s) 214
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 2 cut(s) 182, 248
TseI GCWGC 4 cut(s) 100, 103, 157, 570
Tsp45I GTSAC 2 cut(s) 182, 248
TspDTI ATGAA 4 cut(s) 23, 72, 308, 504
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 556
Tth111I GACNNNGTC 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 488
XceI RCATGY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 539
XspI CTAG 3 cut(s) 341, 534, 540
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.