RLG00000025715

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017185
Physical Location & Seq
Reverse (-)
47840670 .. 47841688
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025715

Sequence Viewer

Length: 660 bp
ATGGATATGAAAGACGTCGAGCAAATACCCGCGCCGCAGCCGGGGAAGTTATCGTTGTCCTCGGAATCATCACCGTGCCTGTCGCTTTCGTCCTCCGAGAAGGAGCTGCAGGACATGCCGCTGGCGCCGCCGAAGATGATGAGCCGGAAGAGGCTGTGCAAGCAGCTGTCCATGTGCGAGACGCCACGTGACATTGCATGGGAGAAGCGGCGCCGGCAAATTCTGAAGCAGGAGAGGAAGAGGAACGGAAATGGTGACTCCCCCGGCGCCGCAGCCGAACCAGAGGGAGACGACATGAACCTGACCGACGAGGACTTGCATGAGCTGAAAGGGTGTATAGAGCTAGGGTTTGGGTTCAATGAGGAAGAGGGTCAACGGTTGTGCCCCACATTGCCGGCTCTTGACCTTTACTTTGCCGTTAACCGCCAGTTCTCGCCGAGTCCGATCTCCTCGCCGAATAGCAGCCGACATTCCACGTCGTCAATTGGTGGTGCGACGTCGTCGTTTGGTGGACTTTCATCGTCGTTTGGAAGCCCTAGTCCTAGGAGCGACAGTGATGGATGGAAGATATGCAGCCCAGGTGATAATCCTCAACAGGTGAAGACCAAGTTGAGGCATTGGGCGCAAGCAGTTGCTTGTTCAGTTATGCAATCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

220

Amino Acids

23.96

Weight (kDa)

5.98

Isoelectric Point (pI)

87.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 101 - 157 2.4e-25 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08790
fragaria_vesca FvH4_6g02671
malus_domestica MD04G1226100.v1.1 MD12G1243200.v1.1
prunus_persica Prupe.6G344900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450641
rosa_laevigata RLG00000025715
rosa_multiflora Rmu_sc0000078.1_g000040
rosa_rugosa Rorug02G0629200
rosa_samantha Rh3AG029900 Rh3BG030300 Rh3CG029200 Rh3DG030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 18, 500
AccB1I GGYRCC 3 cut(s) 124, 210, 266
AccII CGCG 1 cut(s) 32
AciI CCGC 7 cut(s) 30, 35, 119, 128, 208, 270, 424
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 245
AcvI CACGTG 1 cut(s) 188
AcyI GRCGYC 6 cut(s) 15, 125, 182, 211, 267, 497
AfiI CCNNNNNNNGG 2 cut(s) 41, 612
AgsI TTSAA 1 cut(s) 358
AjiI CACGTC 1 cut(s) 477
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 4 cut(s) 106, 166, 325, 343
AluI AGCT 4 cut(s) 106, 166, 325, 343
Alw26I GTCTC 2 cut(s) 173, 282
ApeKI GCWGC 6 cut(s) 37, 106, 163, 272, 462, 573
ApoI RAATTY 1 cut(s) 219
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspA2I CCTAGG 1 cut(s) 542
AspLEI GCGC 5 cut(s) 34, 127, 213, 269, 625
AsuC2I CCSGG 2 cut(s) 42, 264
AsuHPI GGTGA 4 cut(s) 63, 266, 593, 610
AvrII CCTAGG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 386
BanI GGYRCC 3 cut(s) 124, 210, 266
BbrPI CACGTG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 608
BbvI GCAGC 6 cut(s) 49, 93, 175, 284, 474, 585
BccI CCATC 2 cut(s) 551, 555
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 1 cut(s) 579
BcnI CCSGG 2 cut(s) 42, 264
BcoDI GTCTC 2 cut(s) 173, 282
BfaI CTAG 3 cut(s) 344, 537, 543
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 3 cut(s) 128, 214, 270
BlnI CCTAGG 1 cut(s) 542
Bme1390I CCNGG 3 cut(s) 42, 264, 579
BmgBI CACGTC 1 cut(s) 477
BmiI GGNNCC 3 cut(s) 126, 212, 268
BmrFI CCNGG 3 cut(s) 42, 264, 579
BpiI GAAGAC 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 42, 264
BsaAI YACGTR 1 cut(s) 188
BsaHI GRCGYC 6 cut(s) 15, 125, 182, 211, 267, 497
BsaJI CCNNGG 5 cut(s) 41, 60, 262, 542, 577
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 612
Bse118I RCCGGY 2 cut(s) 213, 394
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 2 cut(s) 192, 389
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 5 cut(s) 41, 60, 262, 542, 577
BseGI GGATG 1 cut(s) 566
BseLI CCNNNNNNNGG 2 cut(s) 41, 612
BseMI GCAATG 2 cut(s) 192, 389
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 439
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 6 cut(s) 49, 93, 175, 284, 474, 585
Bsh1236I CGCG 1 cut(s) 32
BshNI GGYRCC 3 cut(s) 124, 210, 266
BsiSI CCGG 5 cut(s) 41, 145, 214, 264, 395
BslI CCNNNNNNNGG 2 cut(s) 41, 612
BsmAI GTCTC 2 cut(s) 173, 282
BsmBI CGTCTC 2 cut(s) 173, 282
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 444
BspACI CCGC 7 cut(s) 30, 35, 119, 128, 208, 270, 424
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 3 cut(s) 126, 212, 268
BspMAI CTGCAG 1 cut(s) 111
BspT107I GGYRCC 3 cut(s) 124, 210, 266
BsrDI GCAATG 2 cut(s) 192, 389
BsrFI RCCGGY 2 cut(s) 213, 394
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 2 cut(s) 213, 394
BssECI CCNNGG 5 cut(s) 41, 60, 262, 542, 577
BssMI GATC 1 cut(s) 444
BssNI GRCGYC 6 cut(s) 15, 125, 182, 211, 267, 497
BssT1I CCWWGG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 75, 378, 554
Bst6I CTCTTC 3 cut(s) 143, 233, 360
BstACI GRCGYC 6 cut(s) 15, 125, 182, 211, 267, 497
BstAPI GCANNNNNTGC 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 5 cut(s) 123, 161, 215, 396, 627
BstF5I GGATG 1 cut(s) 566
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 3 cut(s) 128, 214, 270
BstHHI GCGC 5 cut(s) 34, 127, 213, 269, 625
BstKTI GATC 1 cut(s) 447
BstMAI GTCTC 2 cut(s) 173, 282
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 6 cut(s) 115, 124, 127, 160, 214, 622
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 40, 262, 577
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 386
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 6 cut(s) 49, 93, 175, 284, 474, 585
BstV2I GAAGAC 1 cut(s) 608
BtrI CACGTC 1 cut(s) 477
BtsCI GGATG 1 cut(s) 566
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 5 cut(s) 123, 161, 215, 396, 627
CfoI GCGC 5 cut(s) 34, 127, 213, 269, 625
Cfr10I RCCGGY 2 cut(s) 213, 394
CseI GACGC 1 cut(s) 190
CviAII CATG 5 cut(s) 115, 172, 198, 295, 320
DinI GGCGCC 3 cut(s) 126, 212, 268
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
Eam1104I CTCTTC 3 cut(s) 143, 233, 360
EarI CTCTTC 3 cut(s) 143, 233, 360
Eco130I CCWWGG 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 542
EgeI GGCGCC 3 cut(s) 126, 212, 268
EheI GGCGCC 3 cut(s) 126, 212, 268
ErhI CCWWGG 1 cut(s) 542
Esp3I CGTCTC 2 cut(s) 173, 282
FaeI CATG 5 cut(s) 118, 175, 201, 298, 323
FaiI YATR 9 cut(s) 8, 116, 173, 199, 296, 321, 338, 571, 647
FatI CATG 5 cut(s) 114, 171, 197, 294, 319
FauI CCCGC 1 cut(s) 37
FokI GGATG 1 cut(s) 573
FspBI CTAG 3 cut(s) 344, 537, 543
GlaI GCGC 5 cut(s) 33, 126, 212, 268, 624
HaeII RGCGCY 3 cut(s) 128, 214, 270
HapII CCGG 5 cut(s) 41, 145, 214, 264, 395
HgaI GACGC 1 cut(s) 190
HhaI GCGC 5 cut(s) 34, 127, 213, 269, 625
Hin1I GRCGYC 6 cut(s) 15, 125, 182, 211, 267, 497
Hin1II CATG 5 cut(s) 118, 175, 201, 298, 323
Hin6I GCGC 5 cut(s) 32, 125, 211, 267, 623
HinP1I GCGC 5 cut(s) 32, 125, 211, 267, 623
HincII GTYRAC 2 cut(s) 374, 421
HindII GTYRAC 2 cut(s) 374, 421
HinfI GANTC 3 cut(s) 65, 257, 439
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 5 cut(s) 41, 145, 214, 264, 395
HphI GGTGA 4 cut(s) 63, 266, 593, 610
Hpy166II GTNNAC 3 cut(s) 374, 421, 512
Hpy188I TCNGA 4 cut(s) 64, 97, 225, 444
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 3 cut(s) 374, 421, 512
Hpy99I CGWCG 7 cut(s) 20, 311, 481, 499, 502, 505, 526
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 3 cut(s) 75, 378, 554
HpyCH4IV ACGT 4 cut(s) 15, 187, 476, 497
HpyCH4V TGCA 6 cut(s) 109, 159, 197, 319, 573, 649
HpyF10VI GCNNNNNNNGC 6 cut(s) 115, 124, 127, 160, 214, 622
HpySE526I ACGT 4 cut(s) 15, 187, 476, 497
Hsp92I GRCGYC 6 cut(s) 15, 125, 182, 211, 267, 497
Hsp92II CATG 5 cut(s) 118, 175, 201, 298, 323
HspAI GCGC 5 cut(s) 32, 125, 211, 267, 623
KasI GGCGCC 3 cut(s) 124, 210, 266
KroI GCCGGC 2 cut(s) 213, 394
KroNI GCCGGC 2 cut(s) 215, 396
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 103, 546
Lsp1109I GCAGC 6 cut(s) 49, 93, 175, 284, 474, 585
MaeI CTAG 3 cut(s) 344, 537, 543
MaeII ACGT 4 cut(s) 15, 187, 476, 497
MaeIII GTNAC 2 cut(s) 188, 254
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 6 cut(s) 145, 160, 250, 377, 577, 613
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 219, 483
Mly113I GGCGCC 3 cut(s) 125, 211, 267
MlyI GAGTC 2 cut(s) 251, 448
MroNI GCCGGC 2 cut(s) 213, 394
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 73
MspA1I CMGCKG 2 cut(s) 121, 166
MspI CCGG 5 cut(s) 41, 145, 214, 264, 395
MspR9I CCNGG 3 cut(s) 42, 264, 579
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 6 cut(s) 115, 124, 127, 160, 214, 622
NaeI GCCGGC 2 cut(s) 215, 396
NarI GGCGCC 3 cut(s) 125, 211, 267
NciI CCSGG 2 cut(s) 42, 264
NdeII GATC 1 cut(s) 444
NgoMIV GCCGGC 2 cut(s) 213, 394
NlaIII CATG 5 cut(s) 118, 175, 201, 298, 323
NlaIV GGNNCC 3 cut(s) 126, 212, 268
NmeAIII GCCGAG 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 188, 254
NspI RCATGY 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PdiI GCCGGC 2 cut(s) 215, 396
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 499
PleI GAGTC 2 cut(s) 251, 447
PluTI GGCGCC 3 cut(s) 128, 214, 270
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 2 cut(s) 251, 447
Ppu21I YACGTR 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 577
PspCI CACGTG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 126, 212, 268
PstI CTGCAG 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 1 cut(s) 444
SchI GAGTC 2 cut(s) 251, 448
ScrFI CCNGG 3 cut(s) 42, 264, 579
SduI GDGCHC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 107
SfoI GGCGCC 3 cut(s) 126, 212, 268
SmiMI CAYNNNNRTG 1 cut(s) 73
Sse9I AATT 2 cut(s) 219, 483
SsiI CCGC 7 cut(s) 30, 35, 119, 128, 208, 270, 424
SspDI GGCGCC 3 cut(s) 124, 210, 266
SspMI CTAG 3 cut(s) 344, 537, 543
StyD4I CCNGG 3 cut(s) 40, 262, 577
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 3 cut(s) 75, 378, 554
TaiI ACGT 4 cut(s) 18, 190, 479, 500
TaqI TCGA 1 cut(s) 18
TaqII GACCGA 1 cut(s) 320
TasI AATT 2 cut(s) 219, 483
TauI GCSGC 5 cut(s) 37, 121, 130, 211, 272
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 2 cut(s) 188, 254
TseI GCWGC 6 cut(s) 37, 106, 163, 272, 462, 573
Tsp45I GTSAC 2 cut(s) 188, 254
TspDTI ATGAA 3 cut(s) 23, 311, 507
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 1 cut(s) 559
Tth111I GACNNNGTC 1 cut(s) 499
XapI RAATTY 1 cut(s) 219
XceI RCATGY 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 542
XspI CTAG 3 cut(s) 344, 537, 543
ZraI GACGTC 2 cut(s) 16, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.