AT1G08990

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009206
Physical Location & Seq
Forward (+)
2888427 .. 2890965
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08990.1

Sequence Viewer

Length: 1701 bp
ATGGGGGCCAAAAGCAAAAGTTCGAGTACGAGATTTTTTATGTTTTATCTTATACTAATATCATTGTCGTTTTTGGGTTTGCTCTTAAACTTTAAACCTCTGTTTCTGCTCAACCCCATGATCGCTTCTCCTTCGATAGTTGAGATTCGTTATTCTTTGCCGGAACCGGTTAAACGGACTCCGATATGGCTCCGACTCATTAGAAACTATCTTCCGGATGAGAAAAAGATCCGAGTGGGTCTTCTCAACATCGCAGAGAACGAGCGAGAGAGCTACGAGGCAAGCGGGACGTCGATCTTGGAGAATGTCCACGTGTCGCTCGATCCTCTTCCGAACAATCTGACATGGACGAGTTTATTCCCGGTTTGGATCGACGAGGATCACACGTGGCACATTCCTAGTTGTCCAGAAGTCCCTCTCCCTAAGATGGAAGGTTCCGAAGCTGACGTGGACGTCGTCGTTGTCAAAGTCCCGTGCGATGGTTTCTCGGAGAAGAGAGGGTTAAGAGACGTTTTCAGGCTACAGGTGAATCTGGCGGCAGCGAATCTTGTGGTGGAGAGTGGTCGGAGGAATGTTGATCGGACTGTGTACGTTGTCTTCATCGGATCTTGTGGGCCTATGCATGAGATCTTTAGGTGTGATGAGCGCGTGAAGCGCGTGGGGGACTATTGGGTCTATAGGCCTGATCTTACGAGGTTGAAGCAGAAGCTTCTCATGCCTCCTGGTTCATGTCAGATTGCTCCGCTAGGTCAAGGAGAAGCATGGATACAAGACAAGAACAGAAATCTCACATCCGAAAAAACTACATTATCATCATTTACTGCCCAACGTGTCGCTTACGTGACGTTACTACACTCATCGGAGGTATACGTATGCGGAGCAATAGCCTTAGCACAAAGCATAAGGCAATCTGGATCAACCAAGGACATGATTCTCCTCCACGATGACTCTATAACCAACATCTCTCTCATTGGCCTAAGCCTTGCTGGCTGGAAACTACGGCGAGTGGAGAGAATTCGTAGTCCTTTTTCCAAGAAGCGTTCTTACAATGAGTGGAACTACAGTAAGTTACGTGTGTGGCAAGTGACAGATTACGACAAACTAGTGTTTATAGACGCAGACTTCATCATCGTCAAGAATATTGATTACCTTTTCTCCTATCCTCAACTTTCTGCCGCTGGCAATAACAAAGTCTTGTTCAACTCAGGAGTCATGGTTCTGGAGCCATCAGCTTGTTTATTCGAGGATTTGATGCTTAAATCATTCAAGATCGGGTCATACAACGGGGGAGACCAAGGATTTCTGAACGAATATTTCGTGTGGTGGCATAGGTTATCAAAACGTTTAAATACGATGAAATACTTTGGTGATGAAAGCAGGCATGATAAAGCGCGCAATCTTCCAGAAAATTTAGAGGGCATACACTACTTGGGACTAAAACCATGGCGATGTTACAGAGACTACGATTGTAACTGGGACTTGAAAACGCGACGTGTGTATGCAAGCGAGTCGGTGCATGCGAGATGGTGGAAAGTGTACGACAAGATGCCTAAGAAGCTGAAAGGTTATTGTGGTTTGAATCTTAAGATGGAGAAGAACGTTGAGAAGTGGAGGAAAATGGCTAAGCTCAATGGTTTTCCTGAAAATCATTGGAAAATTAGAATAAAAGATCCTAGGAAGAAGAACCGTCTAAGTCAATGA

Protein Analysis

566

Amino Acids

65.63

Weight (kDa)

9.42

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 393 - 483 1.4e-06 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 452, 671
AatII GACGTC 2 cut(s) 293, 456
AccI GTMKAC 1 cut(s) 867
AccII CGCG 4 cut(s) 648, 657, 1393, 1489
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 5 cut(s) 285, 536, 743, 876, 1176
AclI AACGTT 2 cut(s) 1342, 1599
AclWI GGATC 7 cut(s) 223, 317, 377, 387, 613, 922, 1664
AcsI RAATTY 2 cut(s) 1014, 1408
AcvI CACGTG 2 cut(s) 313, 387
AcyI GRCGYC 2 cut(s) 290, 453
AfaI GTAC 3 cut(s) 28, 590, 1538
AfiI CCNNNNNNNGG 2 cut(s) 427, 479
AflII CTTAAG 1 cut(s) 1583
AflIII ACRYGT 5 cut(s) 312, 384, 829, 1072, 1492
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 5 cut(s) 700, 1201, 1267, 1483, 1579
AhlI ACTAGT 1 cut(s) 1102
AjiI CACGTC 2 cut(s) 448, 1493
AjnI CCWGG 1 cut(s) 721
AloI GAACNNNNNNTCC 2 cut(s) 1200, 1232
AluBI AGCT 6 cut(s) 273, 443, 709, 1232, 1558, 1627
AluI AGCT 6 cut(s) 273, 443, 709, 1232, 1558, 1627
Alw26I GTCTC 3 cut(s) 501, 1284, 1452
AlwI GGATC 7 cut(s) 223, 317, 377, 387, 613, 922, 1664
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 4 cut(s) 6, 614, 680, 973
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 2 cut(s) 1014, 1408
AsiGI ACCGGT 1 cut(s) 166
AspA2I CCTAGG 1 cut(s) 1673
AspLEI GCGC 4 cut(s) 648, 657, 1393, 1395
AspS9I GGNCC 2 cut(s) 6, 614
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 538, 1379
AvrII CCTAGG 1 cut(s) 1673
BarI GAAGNNNNNNTAC 6 cut(s) 581, 613, 750, 782, 1028, 1060
BbrPI CACGTG 2 cut(s) 313, 387
BbsI GAAGAC 2 cut(s) 233, 589
BbvI GCAGC 1 cut(s) 551
BccI CCATC 5 cut(s) 421, 473, 1234, 1518, 1582
BceAI ACGGC 1 cut(s) 1016
BcgI CGANNNNNNTGC 2 cut(s) 1491, 1525
BciT130I CCWGG 1 cut(s) 723
BciVI GTATCC 1 cut(s) 759
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 3 cut(s) 501, 1284, 1452
BcuI ACTAGT 1 cut(s) 1102
BfaI CTAG 4 cut(s) 399, 746, 1103, 1674
BfmI CTRYAG 3 cut(s) 521, 676, 1060
BfrI CTTAAG 1 cut(s) 1583
BfuI GTATCC 1 cut(s) 759
BglI GCCNNNNNGGC 1 cut(s) 987
BglII AGATCT 1 cut(s) 627
BisI GCNGC 3 cut(s) 537, 540, 1176
BlnI CCTAGG 1 cut(s) 1673
BlpI GCTNAGC 1 cut(s) 1623
BlsI GCNGC 3 cut(s) 538, 541, 1177
Bme1390I CCNGG 2 cut(s) 362, 723
BmgBI CACGTC 2 cut(s) 448, 1493
BmgT120I GGNCC 2 cut(s) 6, 614
BmiI GGNNCC 5 cut(s) 7, 165, 191, 436, 1224
BmrFI CCNGG 2 cut(s) 362, 723
BmrI ACTGGG 1 cut(s) 1483
BmsI GCATC 2 cut(s) 1242, 1536
BmuI ACTGGG 1 cut(s) 1483
BpiI GAAGAC 2 cut(s) 233, 589
BpmI CTGGAG 1 cut(s) 1241
Bpu10I CCTNAGC 2 cut(s) 889, 977
Bpu1102I GCTNAGC 1 cut(s) 1623
BpuMI CCSGG 1 cut(s) 362
BsaAI YACGTR 5 cut(s) 313, 387, 841, 871, 1073
BsaHI GRCGYC 2 cut(s) 290, 453
BsaI GGTCTC 1 cut(s) 1284
BsaJI CCNNGG 4 cut(s) 921, 1294, 1442, 1673
BsaWI WCCGGW 2 cut(s) 166, 214
BsaXI ACNNNNNCTCC 4 cut(s) 1139, 1169, 1200, 1230
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 479
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 1478
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 4 cut(s) 921, 1294, 1442, 1673
BseGI GGATG 2 cut(s) 223, 791
BseLI CCNNNNNNNGG 2 cut(s) 427, 479
BseMII CTCAG 1 cut(s) 1218
BseNI ACTGG 1 cut(s) 1478
BsePI GCGCGC 1 cut(s) 1391
BseRI GAGGAG 1 cut(s) 926
BseXI GCAGC 1 cut(s) 551
Bsh1236I CGCG 4 cut(s) 648, 657, 1393, 1489
BshFI GGCC 4 cut(s) 8, 616, 682, 975
BshTI ACCGGT 1 cut(s) 166
BsiSI CCGG 4 cut(s) 161, 167, 215, 362
BslFI GGGAC 6 cut(s) 301, 398, 455, 677, 1446, 1490
BslI CCNNNNNNNGG 2 cut(s) 427, 479
BsmAI GTCTC 3 cut(s) 501, 1284, 1452
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 6 cut(s) 301, 398, 455, 677, 1446, 1490
BsnI GGCC 4 cut(s) 8, 616, 682, 975
Bso31I GGTCTC 1 cut(s) 1284
Bsp13I TCCGGA 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 1623
Bsp19I CCATGG 1 cut(s) 1442
BspACI CCGC 5 cut(s) 285, 536, 743, 876, 1176
BspANI GGCC 4 cut(s) 8, 616, 682, 975
BspCNI CTCAG 1 cut(s) 1217
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 4 cut(s) 648, 657, 1393, 1489
BspLI GGNNCC 5 cut(s) 7, 165, 191, 436, 1224
BspPI GGATC 7 cut(s) 223, 317, 377, 387, 613, 922, 1664
BspTI CTTAAG 1 cut(s) 1583
BspTNI GGTCTC 1 cut(s) 1284
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 1478
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 921, 1294, 1442, 1673
BssHII GCGCGC 1 cut(s) 1391
BssNAI GTATAC 1 cut(s) 868
BssNI GRCGYC 2 cut(s) 290, 453
BssT1I CCWWGG 4 cut(s) 921, 1294, 1442, 1673
Bst1107I GTATAC 1 cut(s) 868
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 586, 1064, 1688
Bst6I CTCTTC 2 cut(s) 333, 488
BstACI GRCGYC 2 cut(s) 290, 453
BstAFI CTTAAG 1 cut(s) 1583
BstBAI YACGTR 5 cut(s) 313, 387, 841, 871, 1073
BstC8I GCNNGC 7 cut(s) 283, 988, 1180, 1379, 1393, 1504, 1518
BstDEI CTNAG 7 cut(s) 423, 889, 977, 1204, 1551, 1623, 1691
BstDSI CCRYGG 1 cut(s) 1442
BstF5I GGATG 2 cut(s) 223, 791
BstFNI CGCG 4 cut(s) 648, 657, 1393, 1489
BstHHI GCGC 4 cut(s) 648, 657, 1393, 1395
BstMAI GTCTC 3 cut(s) 501, 1284, 1452
BstMWI GCNNNNNNNGC 5 cut(s) 652, 654, 715, 987, 1555
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 1520
BstSCI CCNGG 2 cut(s) 360, 721
BstSFI CTRYAG 3 cut(s) 521, 676, 1060
BstSNI TACGTA 1 cut(s) 871
BstUI CGCG 4 cut(s) 648, 657, 1393, 1489
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 2 cut(s) 233, 589
BstX2I RGATCY 4 cut(s) 228, 605, 627, 1669
BstYI RGATCY 4 cut(s) 228, 605, 627, 1669
BstZ17I GTATAC 1 cut(s) 868
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 4 cut(s) 8, 616, 682, 975
BtgI CCRYGG 1 cut(s) 1442
BtgZI GCGATG 3 cut(s) 235, 492, 1462
BtrI CACGTC 2 cut(s) 448, 1493
BtsCI GGATG 2 cut(s) 223, 791
Cac8I GCNNGC 7 cut(s) 283, 988, 1180, 1379, 1393, 1504, 1518
CfoI GCGC 4 cut(s) 648, 657, 1393, 1395
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 6, 614
CseI GACGC 1 cut(s) 1124
Csp6I GTAC 3 cut(s) 27, 589, 1537
CspAI ACCGGT 1 cut(s) 166
CviQI GTAC 3 cut(s) 27, 589, 1537
DdeI CTNAG 7 cut(s) 423, 889, 977, 1204, 1551, 1623, 1691
DraI TTTAAA 2 cut(s) 94, 1347
DrdI GACNNNNNNGTC 2 cut(s) 452, 671
DseDI GACNNNNNNGTC 2 cut(s) 452, 671
Eam1104I CTCTTC 2 cut(s) 333, 488
EarI CTCTTC 2 cut(s) 333, 488
Eco105I TACGTA 1 cut(s) 871
Eco130I CCWWGG 4 cut(s) 921, 1294, 1442, 1673
Eco147I AGGCCT 1 cut(s) 682
Eco31I GGTCTC 1 cut(s) 1284
Eco72I CACGTG 2 cut(s) 313, 387
EcoRI GAATTC 1 cut(s) 1014
EcoRII CCWGG 1 cut(s) 721
EcoT14I CCWWGG 4 cut(s) 921, 1294, 1442, 1673
EcoT22I ATGCAT 1 cut(s) 624
ErhI CCWWGG 4 cut(s) 921, 1294, 1442, 1673
Esp3I CGTCTC 1 cut(s) 501
FaqI GGGAC 6 cut(s) 301, 398, 455, 677, 1446, 1490
FauI CCCGC 1 cut(s) 278
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 3 cut(s) 537, 540, 1176
FokI GGATG 2 cut(s) 230, 778
Fsp4HI GCNGC 3 cut(s) 537, 540, 1176
FspBI CTAG 4 cut(s) 399, 746, 1103, 1674
GlaI GCGC 4 cut(s) 647, 656, 1392, 1394
GluI GCNGC 3 cut(s) 537, 540, 1176
GsuI CTGGAG 1 cut(s) 1241
HaeIII GGCC 4 cut(s) 8, 616, 682, 975
HapII CCGG 4 cut(s) 161, 167, 215, 362
HgaI GACGC 1 cut(s) 1124
HhaI GCGC 4 cut(s) 648, 657, 1393, 1395
Hin1I GRCGYC 2 cut(s) 290, 453
Hin6I GCGC 4 cut(s) 646, 655, 1391, 1393
HinP1I GCGC 4 cut(s) 646, 655, 1391, 1393
HindIII AAGCTT 1 cut(s) 707
HpaII CCGG 4 cut(s) 161, 167, 215, 362
HphI GGTGA 2 cut(s) 538, 1379
Hpy166II GTNNAC 5 cut(s) 310, 451, 589, 868, 1537
Hpy188III TCNNGA 9 cut(s) 215, 407, 912, 1135, 1206, 1220, 1267, 1403, 1640
Hpy8I GTNNAC 5 cut(s) 310, 451, 589, 868, 1537
Hpy99I CGWCG 5 cut(s) 295, 377, 458, 461, 1494
HpyAV CCTTC 2 cut(s) 141, 425
HpyCH4III ACNGT 3 cut(s) 586, 1064, 1688
HpyCH4V TGCA 3 cut(s) 622, 1502, 1516
HpyF10VI GCNNNNNNNGC 5 cut(s) 652, 654, 715, 987, 1555
HpyF3I CTNAG 7 cut(s) 423, 889, 977, 1204, 1551, 1623, 1691
Hsp92I GRCGYC 2 cut(s) 290, 453
HspAI GCGC 4 cut(s) 646, 655, 1391, 1393
Kpn2I TCCGGA 1 cut(s) 214
LmnI GCTCC 4 cut(s) 195, 745, 878, 1222
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 2 cut(s) 1242, 1536
MaeI CTAG 4 cut(s) 399, 746, 1103, 1674
MaeIII GTNAC 6 cut(s) 841, 846, 1068, 1084, 1451, 1469
MboII GAAGA 9 cut(s) 203, 233, 320, 505, 589, 1391, 1606, 1690, 1693
MflI RGATCY 4 cut(s) 228, 605, 627, 1669
MluCI AATT 3 cut(s) 1014, 1408, 1656
MlyI GAGTC 5 cut(s) 172, 189, 941, 1218, 1517
MmeI TCCRAC 2 cut(s) 217, 545
Mph1103I ATGCAT 1 cut(s) 624
MroI TCCGGA 1 cut(s) 214
MseI TTAA 7 cut(s) 86, 93, 171, 503, 1257, 1346, 1584
MslI CAYNNNNRTG 1 cut(s) 1447
MspA1I CMGCKG 1 cut(s) 1178
MspCI CTTAAG 1 cut(s) 1583
MspI CCGG 4 cut(s) 161, 167, 215, 362
MspR9I CCNGG 2 cut(s) 362, 723
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 4 cut(s) 648, 657, 1393, 1489
MwoI GCNNNNNNNGC 5 cut(s) 652, 654, 715, 987, 1555
NciI CCSGG 1 cut(s) 362
NcoI CCATGG 1 cut(s) 1442
NlaIV GGNNCC 5 cut(s) 7, 165, 191, 436, 1224
NmuCI GTSAC 2 cut(s) 841, 1084
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 1 cut(s) 1520
PaeI GCATGC 1 cut(s) 1520
PauI GCGCGC 1 cut(s) 1391
PceI AGGCCT 1 cut(s) 682
PcsI WCGNNNNNNNCGW 5 cut(s) 258, 318, 453, 1314, 1517
PfeI GAWTC 5 cut(s) 145, 529, 544, 931, 1579
PflFI GACNNNGTC 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 3 cut(s) 538, 541, 1177
PleI GAGTC 5 cut(s) 172, 189, 941, 1217, 1516
PmaCI CACGTG 2 cut(s) 313, 387
PmlI CACGTG 2 cut(s) 313, 387
PpsI GAGTC 5 cut(s) 172, 189, 941, 1217, 1516
Ppu21I YACGTR 5 cut(s) 313, 387, 841, 871, 1073
Psp1406I AACGTT 2 cut(s) 1342, 1599
Psp6I CCWGG 1 cut(s) 721
PspCI CACGTG 2 cut(s) 313, 387
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 5 cut(s) 7, 165, 191, 436, 1224
PspPI GGNCC 2 cut(s) 6, 614
PsuI RGATCY 4 cut(s) 228, 605, 627, 1669
PsyI GACNNNGTC 1 cut(s) 455
PteI GCGCGC 1 cut(s) 1391
RsaI GTAC 3 cut(s) 28, 590, 1538
RsaNI GTAC 3 cut(s) 27, 589, 1537
RseI CAYNNNNRTG 1 cut(s) 1447
SaqAI TTAA 7 cut(s) 86, 93, 171, 503, 1257, 1346, 1584
SatI GCNGC 3 cut(s) 537, 540, 1176
Sau96I GGNCC 2 cut(s) 6, 614
SchI GAGTC 5 cut(s) 172, 189, 941, 1218, 1517
ScrFI CCNGG 2 cut(s) 362, 723
SfaNI GCATC 2 cut(s) 1242, 1536
SfcI CTRYAG 3 cut(s) 521, 676, 1060
SmiMI CAYNNNNRTG 1 cut(s) 1447
SmlI CTYRAG 1 cut(s) 1583
SmoI CTYRAG 1 cut(s) 1583
SnaBI TACGTA 1 cut(s) 871
SpeI ACTAGT 1 cut(s) 1102
SphI GCATGC 1 cut(s) 1520
Sse9I AATT 3 cut(s) 1014, 1408, 1656
SseBI AGGCCT 1 cut(s) 682
SsiI CCGC 5 cut(s) 285, 536, 743, 876, 1176
SspI AATATT 2 cut(s) 1141, 1313
SspMI CTAG 4 cut(s) 399, 746, 1103, 1674
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 2 cut(s) 360, 721
StyI CCWWGG 4 cut(s) 921, 1294, 1442, 1673
TaaI ACNGT 3 cut(s) 586, 1064, 1688
TaqI TCGA 6 cut(s) 23, 134, 293, 321, 372, 1242
TasI AATT 3 cut(s) 1014, 1408, 1656
TauI GCSGC 2 cut(s) 539, 1178
TfiI GAWTC 5 cut(s) 145, 529, 544, 931, 1579
Tru1I TTAA 7 cut(s) 86, 93, 171, 503, 1257, 1346, 1584
Tru9I TTAA 7 cut(s) 86, 93, 171, 503, 1257, 1346, 1584
TseFI GTSAC 2 cut(s) 841, 1084
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 841, 1084
TspDTI ATGAA 5 cut(s) 589, 717, 1114, 1370, 1386
TspGWI ACGGA 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 455
Vha464I CTTAAG 1 cut(s) 1583
XapI RAATTY 2 cut(s) 1014, 1408
XceI RCATGY 1 cut(s) 1520
XmaJI CCTAGG 1 cut(s) 1673
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 4 cut(s) 399, 746, 1103, 1674
ZraI GACGTC 2 cut(s) 291, 454
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.