pycom04g18190

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0009206
Physical Location & Seq
Reverse (-)
20310301 .. 20312103
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18190.1

Sequence Viewer

Length: 1320 bp
ATGGCTTCCAAGTTTTCTTCCTCCTCCTCCTCCTCCTCCAAACAACGAGTAGTCCCCTTCGTTCTCTATCTATTTATTCTCTCTCTGTTCATCCTATGCCTAATGATCTCGTATAATTTTCGTCCCACCGAGTCGAACAATTCAGCTACCAATCGACATGAACAGGTTATCAAGAACAAAACCGAGAATGCGAACTGGTTTGCTGCCATTTCCAAGCGATTCAAAATCAAGGGCAGAAAAATTAAGGTAGGTTTGGTCAATGTAGATGAACATATTCATCGTCAGCTCCGTGGACTATCAGATGTAGAGGCAGTCTCAGTGGCATTCGAACGCGTAGCTAGGGATCGAAAATGGGAGGCCTATTTTCCCGAATGGGTTGACGAAGACGAGGAGCGGGGGAAACCAAAGTGTCCGGAAATCCCAATTCCTAAGCTGGAGAATTACGAGGGCATCGATGTGGTACTGGCCAAGGTTCCATGTGGAGCAAATAGGACGAGTGACAAGGAAGGGATTAGGGATGTGTTTAGATTACAAGTTAATTTGGTGGTGGCTAATCTAGTGGTGGGGAGAGGGTGGATGAAGCCTGATGCTCATCGGACGGTGTATGTTGTGTTTATCGGGGCTTGTGGACCGATGGTGGAGATTTTCAGATGTGATGATCGTTTGATGCATAGAGGGAATTATTGGGTTTATAGGCCTAATATTGTGAGATTGAAACAAAAGGTGCATATGCCTTTTGGATCTTGCCAAATTGCTCCGGGTTATGCAGAAACAGGCAGAGAAATCTGGAGAAAATACATGTTAGAAACAAGCTCATGGATTCCATACGAGAAGCGTAGACTTGCCTATGTCACAATCCTGCACTCCTCAGAAGCCTATGTGTGTGGTGCAATAGCCCTAGCTCAAAGCATCAGACAAACCAACTCCACCAAAGACCTAGTCCTCCTTGCGGACGACTCCATCACTCCTAAATCCATCCAAGGCCTAACCGCGGCCGGATGGAATATCAAGCGAATCCAAAGAATCCGAAGCACATCTGCGCAAAAAGGATCCTACAACGAGTGGAACTACAGCAAACTCCGGGTGTGGCAGCTCACGGAGTATGACAAGGTCATTTTCATCGACGCGGACCTTCTAGTCCTCAAGAACATTGACAGTTTCTTCGTGCACCCGCAACTGTCAGCCGTGGGGAATAGCAAGATGTTGTTCAACTCCGGCTTGATGGTTGTGGAGCCATCGAACTGCATGTTCGAATACCTAATGCGAAAATCGTTCAAAATTGAGTCATACAACGGTGGCGATCGATCAAGGGTTTTTTGA

Protein Analysis

440

Amino Acids

50.4

Weight (kDa)

9.48

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 286 - 388 6e-11 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1136
Acc16I TGCGCA 1 cut(s) 1041
AccBSI CCGCTC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 838
AccII CGCG 3 cut(s) 333, 992, 1127
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 6 cut(s) 394, 950, 990, 992, 1127, 1172
AclWI GGATC 4 cut(s) 351, 748, 1044, 1057
AcoI YGGCCR 2 cut(s) 465, 993
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 2 cut(s) 949, 991
AflIII ACRYGT 2 cut(s) 331, 798
AgsI TTSAA 4 cut(s) 223, 715, 1210, 1276
AluBI AGCT 7 cut(s) 146, 286, 338, 433, 813, 902, 1093
AluI AGCT 7 cut(s) 146, 286, 338, 433, 813, 902, 1093
Alw21I GWGCWC 1 cut(s) 1170
Alw26I GTCTC 1 cut(s) 319
Alw44I GTGCAC 1 cut(s) 1166
AlwI GGATC 4 cut(s) 351, 748, 1044, 1057
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 5 cut(s) 357, 465, 695, 982, 993
ApaLI GTGCAC 1 cut(s) 1166
ApeKI GCWGC 2 cut(s) 203, 1090
ArsI GACNNNNNNTTYG 4 cut(s) 924, 956, 1145, 1177
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 2 cut(s) 629, 1129
AsuC2I CCSGG 2 cut(s) 759, 1082
AsuII TTCGAA 2 cut(s) 327, 1251
AvaII GGWCC 2 cut(s) 629, 1129
BaeGI GKGCMC 1 cut(s) 1170
BalI TGGCCA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 1049
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 1170
BbvI GCAGC 2 cut(s) 190, 1102
BccI CCATC 6 cut(s) 628, 968, 983, 993, 1216, 1243
BceAI ACGGC 1 cut(s) 1169
BcnI CCSGG 2 cut(s) 759, 1082
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 5 cut(s) 339, 557, 899, 938, 1136
BfmI CTRYAG 1 cut(s) 1069
BisI GCNGC 3 cut(s) 204, 993, 1091
BlsI GCNGC 3 cut(s) 205, 994, 1092
Bme1390I CCNGG 2 cut(s) 759, 1082
Bme18I GGWCC 2 cut(s) 629, 1129
BmgT120I GGNCC 2 cut(s) 629, 1129
BmiI GGNNCC 3 cut(s) 474, 1051, 1233
BmrFI CCNGG 2 cut(s) 759, 1082
BmsI GCATC 4 cut(s) 459, 577, 657, 918
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 2 cut(s) 455, 808
Bpu10I CCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 2 cut(s) 327, 1251
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 2 cut(s) 759, 1082
Bsa29I ATCGAT 2 cut(s) 453, 1303
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 5 cut(s) 289, 468, 979, 990, 1185
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 949, 991
Bse1I ACTGG 2 cut(s) 200, 468
Bse8I GATNNNNATC 1 cut(s) 591
BseAI TCCGGA 1 cut(s) 412
BseCI ATCGAT 2 cut(s) 453, 1303
BseDI CCNNGG 5 cut(s) 289, 468, 979, 990, 1185
BseGI GGATG 5 cut(s) 90, 523, 582, 975, 1004
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 949, 991
BseMII CTCAG 2 cut(s) 330, 882
BseNI ACTGG 2 cut(s) 200, 468
BseRI GAGGAG 7 cut(s) 13, 16, 19, 22, 25, 404, 856
BseSI GKGCMC 1 cut(s) 1170
BseX3I CGGCCG 1 cut(s) 993
BseXI GCAGC 2 cut(s) 190, 1102
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 3 cut(s) 333, 992, 1127
Bsh1285I CGRYCG 2 cut(s) 996, 1303
BshFI GGCC 5 cut(s) 359, 467, 697, 984, 995
BshVI ATCGAT 2 cut(s) 453, 1303
BsiEI CGRYCG 2 cut(s) 996, 1303
BsiHKAI GWGCWC 1 cut(s) 1170
BsiSI CCGG 5 cut(s) 413, 758, 996, 1081, 1215
BslFI GGGAC 2 cut(s) 38, 108
BslI CCNNNNNNNGG 2 cut(s) 949, 991
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 38, 108
BsmI GAATGC 2 cut(s) 193, 323
BsnI GGCC 5 cut(s) 359, 467, 697, 984, 995
Bsp119I TTCGAA 2 cut(s) 327, 1251
Bsp1286I GDGCHC 1 cut(s) 1170
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
BspACI CCGC 6 cut(s) 394, 950, 990, 992, 1127, 1172
BspANI GGCC 5 cut(s) 359, 467, 697, 984, 995
BspCNI CTCAG 2 cut(s) 329, 881
BspDI ATCGAT 2 cut(s) 453, 1303
BspEI TCCGGA 1 cut(s) 412
BspFNI CGCG 3 cut(s) 333, 992, 1127
BspLI GGNNCC 3 cut(s) 474, 1051, 1233
BspPI GGATC 4 cut(s) 351, 748, 1044, 1057
BspT104I TTCGAA 2 cut(s) 327, 1251
BsrBI CCGCTC 1 cut(s) 394
BsrI ACTGG 2 cut(s) 200, 468
BssECI CCNNGG 5 cut(s) 289, 468, 979, 990, 1185
BssMI GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
BssT1I CCWWGG 2 cut(s) 468, 979
Bst4CI ACNGT 4 cut(s) 601, 1157, 1179, 1295
BstBI TTCGAA 2 cut(s) 327, 1251
BstDEI CTNAG 3 cut(s) 316, 429, 868
BstDSI CCRYGG 3 cut(s) 289, 990, 1185
BstF5I GGATG 5 cut(s) 90, 523, 582, 975, 1004
BstFNI CGCG 3 cut(s) 333, 992, 1127
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 7 cut(s) 108, 346, 661, 743, 1052, 1303, 1307
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
BstMCI CGRYCG 2 cut(s) 996, 1303
BstNSI RCATGY 2 cut(s) 802, 1249
BstSCI CCNGG 2 cut(s) 757, 1080
BstSFI CTRYAG 1 cut(s) 1069
BstSLI GKGCMC 1 cut(s) 1170
BstUI CGCG 3 cut(s) 333, 992, 1127
BstV1I GCAGC 2 cut(s) 190, 1102
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 2 cut(s) 740, 1049
BstYI RGATCY 2 cut(s) 740, 1049
BstZI CGGCCG 1 cut(s) 993
Bsu15I ATCGAT 2 cut(s) 453, 1303
BsuRI GGCC 5 cut(s) 359, 467, 697, 984, 995
BsuTUI ATCGAT 2 cut(s) 453, 1303
BtgI CCRYGG 3 cut(s) 289, 990, 1185
BtsCI GGATG 5 cut(s) 90, 523, 582, 975, 1004
BtsIMutI CAGTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 1042
Cfr13I GGNCC 2 cut(s) 629, 1129
Cfr42I CCGCGG 1 cut(s) 993
ClaI ATCGAT 2 cut(s) 453, 1303
CseI GACGC 1 cut(s) 1133
Csp6I GTAC 1 cut(s) 461
CviAII CATG 5 cut(s) 158, 477, 799, 816, 1246
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 3 cut(s) 316, 429, 868
DpnI GATC 7 cut(s) 107, 345, 660, 742, 1051, 1302, 1306
DpnII GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
DrdI GACNNNNNNGTC 1 cut(s) 1136
DseDI GACNNNNNNGTC 1 cut(s) 1136
EaeI YGGCCR 2 cut(s) 465, 993
EagI CGGCCG 1 cut(s) 993
EclXI CGGCCG 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 468, 979
Eco147I AGGCCT 3 cut(s) 359, 697, 984
Eco47I GGWCC 2 cut(s) 629, 1129
Eco52I CGGCCG 1 cut(s) 993
EcoT14I CCWWGG 2 cut(s) 468, 979
EcoT22I ATGCAT 1 cut(s) 672
ErhI CCWWGG 2 cut(s) 468, 979
FaeI CATG 5 cut(s) 161, 480, 802, 819, 1249
FaqI GGGAC 2 cut(s) 38, 108
FatI CATG 5 cut(s) 157, 476, 798, 815, 1245
FauI CCCGC 2 cut(s) 387, 1179
FauNDI CATATG 1 cut(s) 729
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 3 cut(s) 204, 993, 1091
FokI GGATG 5 cut(s) 77, 530, 589, 962, 1011
Fsp4HI GCNGC 3 cut(s) 204, 993, 1091
FspBI CTAG 5 cut(s) 339, 557, 899, 938, 1136
FspI TGCGCA 1 cut(s) 1041
GlaI GCGC 1 cut(s) 1041
GluI GCNGC 3 cut(s) 204, 993, 1091
GsuI CTGGAG 2 cut(s) 455, 808
HaeIII GGCC 5 cut(s) 359, 467, 697, 984, 995
HapII CCGG 5 cut(s) 413, 758, 996, 1081, 1215
HgaI GACGC 1 cut(s) 1133
HhaI GCGC 1 cut(s) 1042
Hin1II CATG 5 cut(s) 161, 480, 802, 819, 1249
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 7 cut(s) 131, 219, 820, 956, 1014, 1023, 1283
HpaII CCGG 5 cut(s) 413, 758, 996, 1081, 1215
Hpy166II GTNNAC 5 cut(s) 293, 379, 629, 839, 1168
Hpy188I TCNGA 6 cut(s) 301, 597, 650, 871, 914, 1028
Hpy188III TCNNGA 5 cut(s) 172, 368, 413, 787, 1144
Hpy8I GTNNAC 5 cut(s) 293, 379, 629, 839, 1168
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 3 cut(s) 67, 500, 1142
HpyCH4III ACNGT 4 cut(s) 601, 1157, 1179, 1295
HpyCH4V TGCA 7 cut(s) 670, 727, 767, 862, 890, 1168, 1245
HpyF3I CTNAG 3 cut(s) 316, 429, 868
Hsp92II CATG 5 cut(s) 161, 480, 802, 819, 1249
HspAI GCGC 1 cut(s) 1040
Kpn2I TCCGGA 1 cut(s) 412
KspI CCGCGG 1 cut(s) 993
Kzo9I GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
LmnI GCTCC 5 cut(s) 291, 391, 482, 760, 1231
Lsp1109I GCAGC 2 cut(s) 190, 1102
LweI GCATC 4 cut(s) 459, 577, 657, 918
MaeI CTAG 5 cut(s) 339, 557, 899, 938, 1136
MaeIII GTNAC 2 cut(s) 497, 850
MalI GATC 7 cut(s) 107, 345, 660, 742, 1051, 1302, 1306
MbiI CCGCTC 1 cut(s) 394
MboI GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
MboII GAAGA 3 cut(s) 9, 395, 1153
MflI RGATCY 2 cut(s) 740, 1049
MhlI GDGCHC 1 cut(s) 1170
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 9 cut(s) 115, 139, 240, 423, 439, 538, 679, 750, 1278
MluI ACGCGT 1 cut(s) 331
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 3 cut(s) 140, 950, 1292
Mox20I TGGCCA 1 cut(s) 467
Mph1103I ATGCAT 1 cut(s) 672
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 273
MscI TGGCCA 1 cut(s) 467
MseI TTAA 2 cut(s) 243, 537
MslI CAYNNNNRTG 1 cut(s) 455
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 5 cut(s) 413, 758, 996, 1081, 1215
MspR9I CCNGG 2 cut(s) 759, 1082
Mva1269I GAATGC 2 cut(s) 193, 323
MvnI CGCG 3 cut(s) 333, 992, 1127
NciI CCSGG 2 cut(s) 759, 1082
NdeI CATATG 1 cut(s) 729
NdeII GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
NlaIII CATG 5 cut(s) 161, 480, 802, 819, 1249
NlaIV GGNNCC 3 cut(s) 474, 1051, 1233
NmuCI GTSAC 2 cut(s) 497, 850
NsbI TGCGCA 1 cut(s) 1041
NsiI ATGCAT 1 cut(s) 672
NspI RCATGY 2 cut(s) 802, 1249
NspV TTCGAA 2 cut(s) 327, 1251
PceI AGGCCT 3 cut(s) 359, 697, 984
PciI ACATGT 1 cut(s) 798
PcsI WCGNNNNNNNCGW 2 cut(s) 286, 450
PctI GAATGC 2 cut(s) 193, 323
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 219, 820, 1014, 1023
PflFI GACNNNGTC 2 cut(s) 938, 1109
PkrI GCNGC 3 cut(s) 205, 994, 1092
Ple19I CGATCG 1 cut(s) 1303
PleI GAGTC 3 cut(s) 139, 950, 1291
PpsI GAGTC 3 cut(s) 139, 950, 1291
PscI ACATGT 1 cut(s) 798
PspN4I GGNNCC 3 cut(s) 474, 1051, 1233
PspPI GGNCC 2 cut(s) 629, 1129
PsuI RGATCY 2 cut(s) 740, 1049
PsyI GACNNNGTC 2 cut(s) 938, 1109
PvuI CGATCG 1 cut(s) 1303
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 455
SacII CCGCGG 1 cut(s) 993
SaqAI TTAA 2 cut(s) 243, 537
SatI GCNGC 3 cut(s) 204, 993, 1091
Sau3AI GATC 7 cut(s) 105, 343, 658, 740, 1049, 1300, 1304
Sau96I GGNCC 2 cut(s) 629, 1129
SchI GAGTC 3 cut(s) 140, 950, 1292
ScrFI CCNGG 2 cut(s) 759, 1082
SduI GDGCHC 1 cut(s) 1170
SfaNI GCATC 4 cut(s) 459, 577, 657, 918
SfcI CTRYAG 1 cut(s) 1069
Sfr303I CCGCGG 1 cut(s) 993
SfuI TTCGAA 2 cut(s) 327, 1251
SgrBI CCGCGG 1 cut(s) 993
SinI GGWCC 2 cut(s) 629, 1129
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
Sse9I AATT 9 cut(s) 115, 139, 240, 423, 439, 538, 679, 750, 1278
SseBI AGGCCT 3 cut(s) 359, 697, 984
SsiI CCGC 6 cut(s) 394, 950, 990, 992, 1127, 1172
SspI AATATT 1 cut(s) 703
SspMI CTAG 5 cut(s) 339, 557, 899, 938, 1136
StuI AGGCCT 3 cut(s) 359, 697, 984
StyD4I CCNGG 2 cut(s) 757, 1080
StyI CCWWGG 2 cut(s) 468, 979
TaaI ACNGT 4 cut(s) 601, 1157, 1179, 1295
TaqI TCGA 9 cut(s) 134, 154, 327, 346, 453, 1122, 1238, 1251, 1303
TaqII GACCGA 1 cut(s) 646
TasI AATT 9 cut(s) 115, 139, 240, 423, 439, 538, 679, 750, 1278
TauI GCSGC 1 cut(s) 995
TfiI GAWTC 4 cut(s) 219, 820, 1014, 1023
Tru1I TTAA 2 cut(s) 243, 537
Tru9I TTAA 2 cut(s) 243, 537
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 497, 850
TseI GCWGC 2 cut(s) 203, 1090
Tsp45I GTSAC 2 cut(s) 497, 850
TspDTI ATGAA 6 cut(s) 79, 174, 266, 282, 593, 1108
TspGWI ACGGA 2 cut(s) 278, 1112
TspRI CASTG 1 cut(s) 324
Tth111I GACNNNGTC 2 cut(s) 938, 1109
VneI GTGCAC 1 cut(s) 1166
VpaK11BI GGWCC 2 cut(s) 629, 1129
XceI RCATGY 2 cut(s) 802, 1249
XmiI GTMKAC 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 5 cut(s) 339, 557, 899, 938, 1136
Zsp2I ATGCAT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.