Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009206

Physical Location & Seq

Genomic Coordinates Forward (+)

4196232 .. 4197215

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG063000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTTCAGTATCACTTCCCCACCTCAAGGAACACACTGAAGTACACAAATTTTAACCAATTAATTCTTAATCAACTTGATCATTCGGCAGGTAAAGAAGCTTGGAGACCAAAGTACAATTACCGACCGAGACATGCCTATGTAACAGTCTTACACTCCTCAGAAGCCTACGTTTGTGGTGCAATAGCTTTGGCTCAAAGCATCATACAAACCAACTCCACCAAAGACCTAGTCCTCCTCGCTGACGATTCCATCACTCCCACATCCATCGCCGGCCTACAAGCCGCCGGATGGGATGTCAGGCGAATCCAACGAATCCGAAGCGTCTTTTCCCAAAAGGGTTCATACAATGAGTGGAACTACAGCAAACTACGTGTATGGCAACTAACTGAATACTCCAAAGTCATTTTCATCGATGCAGACCTTCTAGTCCTAGAAAACATGGACATCTTCTTCACATACCCACAATTATCTGCTGCGGCGAACCACAAGCACTTATTTAACTCCGGCTTGCTGGTTTTGGAACCATCTCAATGCATGTTTGAATACCTAATGCGAAAAAGCTTCAAAATCGAGCCTTACAATGGTGGTGATCAGGGATTCCTCAACGAAATCTTTACTTGGTGGCATAGACTCCCTTGGTGGCTAAATGCATTGAAAACTTTCGAGGGAAAGAACATCGAAAAACACGTGATGGCCGATGACCTTTATGCAGTACATTATTTAGGGCTGAAGCCCTGGATGTGTTACAGAGATTATGATTGTAACTGGGATGTAGACAGTCATCAAATTTTCGCGAGTGACTCAGCTCACCGGAGATGGTGGCAAATTTATGATGCCATGCCTAAGGAGCTGCAACCTTATTGTGGTTTGACACAGAAGATGGAGAAGAGTTTGAAGACGTGGAGAGATAGAGCAGCTAATGCTAGATTCGTTGATGGTCACTGGAAAATTGAGATTAAAGACCCTAGACAGCACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

327

Amino Acids

38.6

Weight (kDa)

8.63

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	50 - 151	1.8e-09	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08990 AT1G54940
fragaria_vesca	FvH4_6g05790
malus_domestica	MD04G1205600.v1.1 MD12G1219700.v1.1
prunus_persica	Prupe.6G326400_v2.0.a1
pyrus_communis	pycom04g18190 pycom12g20520
rosa_chinensis	RchiOBHm_Chr3g0454711
rosa_laevigata	RLG00000025422
rosa_multiflora	Rmu_co8376565.1_g000001 Rmu_sc0001792.1_g000024 Rmu_sc0003140.1_g000006 Rmu_sc0017894.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424840
rosa_rugosa	Rorug03G0001600
rosa_samantha	Rh3AG061300 Rh3BG063100 Rh3CG062000 Rh3DG062900 Rh3DG063000
rosa_wichuraiana	Rw3G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	1 cut(s)	797
AciI	CCGC	2 cut(s)	285, 479
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	3 cut(s)	49, 789, 828
AcuI	CTGAAG	2 cut(s)	59, 752
AcvI	CACGTG	1 cut(s)	691
AfaI	GTAC	3 cut(s)	44, 116, 717
AfiI	CCNNNNNNNGG	4 cut(s)	27, 291, 584, 866
AflIII	ACRYGT	2 cut(s)	373, 688
AgsI	TTSAA	4 cut(s)	545, 568, 658, 898
AjiI	CACGTC	1 cut(s)	903
AjnI	CCWGG	1 cut(s)	737
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	6 cut(s)	101, 188, 564, 809, 853, 920
AluI	AGCT	6 cut(s)	101, 188, 564, 809, 853, 920
Alw26I	GTCTC	2 cut(s)	100, 124
AoxI	GGCC	2 cut(s)	274, 696
ApeKI	GCWGC	3 cut(s)	476, 853, 917
ApoI	RAATTY	3 cut(s)	49, 789, 828
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AseI	ATTAAT	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	602, 803
AxyI	CCTNAGG	1 cut(s)	846
BbrPI	CACGTG	1 cut(s)	691
BbsI	GAAGAC	1 cut(s)	905
BbvI	GCAGC	3 cut(s)	463, 840, 929
BccI	CCATC	8 cut(s)	260, 275, 285, 535, 688, 813, 877, 932
BciT130I	CCWGG	1 cut(s)	739
BclI	TGATCA	2 cut(s)	79, 592
BcoDI	GTCTC	2 cut(s)	100, 124
BfaI	CTAG	5 cut(s)	230, 428, 434, 927, 969
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	5 cut(s)	285, 477, 480, 854, 918
BlsI	GCNGC	5 cut(s)	286, 478, 481, 855, 919
Bme1390I	CCNGG	1 cut(s)	739
BmgBI	CACGTC	1 cut(s)	903
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	739
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	210, 406, 826
BmuI	ACTGGG	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	414
BsaAI	YACGTR	2 cut(s)	374, 691
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	638, 737
BsaWI	WCCGGW	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 291, 584, 866
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	773, 950
Bse21I	CCTNAGG	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	739
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	638, 737
BseGI	GGATG	5 cut(s)	263, 296, 301, 747, 778
BseLI	CCNNNNNNNGG	4 cut(s)	27, 291, 584, 866
BseMII	CTCAG	2 cut(s)	174, 819
BseNI	ACTGG	2 cut(s)	773, 950
BseRI	GAGGAG	2 cut(s)	148, 227
BseXI	GCAGC	3 cut(s)	463, 840, 929
Bsh1236I	CGCG	1 cut(s)	797
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	276, 698
BshVI	ATCGAT	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	4 cut(s)	273, 288, 507, 814
BslI	CCNNNNNNNGG	4 cut(s)	27, 291, 584, 866
BsmAI	GTCTC	2 cut(s)	100, 124
BsnI	GGCC	2 cut(s)	276, 698
Bso31I	GGTCTC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	79, 592
Bsp68I	TCGCGA	1 cut(s)	797
BspACI	CCGC	2 cut(s)	285, 479
BspANI	GGCC	2 cut(s)	276, 698
BspCNI	CTCAG	2 cut(s)	173, 818
BspDI	ATCGAT	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	797
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	773, 950
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	638, 737
BssMI	GATC	2 cut(s)	79, 592
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	2 cut(s)	148, 782
Bst6I	CTCTTC	1 cut(s)	884
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstBAI	YACGTR	2 cut(s)	374, 691
BstC8I	GCNNGC	2 cut(s)	274, 512
BstDEI	CTNAG	3 cut(s)	160, 805, 846
BstF5I	GGATG	5 cut(s)	263, 296, 301, 747, 778
BstFNI	CGCG	1 cut(s)	797
BstKTI	GATC	2 cut(s)	82, 595
BstMAI	GTCTC	2 cut(s)	100, 124
BstMBI	GATC	2 cut(s)	79, 592
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	850, 923
BstNI	CCWGG	1 cut(s)	739
BstNSI	RCATGY	2 cut(s)	137, 541
BstSCI	CCNGG	1 cut(s)	737
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	797
BstV1I	GCAGC	3 cut(s)	463, 840, 929
BstV2I	GAAGAC	1 cut(s)	905
Bsu15I	ATCGAT	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	2 cut(s)	276, 698
BsuTUI	ATCGAT	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	903
BtsCI	GGATG	5 cut(s)	263, 296, 301, 747, 778
BtsIMutI	CAGTG	2 cut(s)	35, 943
BtuMI	TCGCGA	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	274, 512
Cfr10I	RCCGGY	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	43, 115, 716
CviAII	CATG	4 cut(s)	134, 442, 538, 841
CviQI	GTAC	3 cut(s)	43, 115, 716
DdeI	CTNAG	3 cut(s)	160, 805, 846
DpnI	GATC	2 cut(s)	81, 594
DpnII	GATC	2 cut(s)	79, 592
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	884
EarI	CTCTTC	1 cut(s)	884
Eco130I	CCWWGG	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	59, 752
Eco72I	CACGTG	1 cut(s)	691
Eco81I	CCTNAGG	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	638
EcoT22I	ATGCAT	2 cut(s)	539, 655
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	4 cut(s)	137, 445, 541, 844
FatI	CATG	4 cut(s)	133, 441, 537, 840
FbaI	TGATCA	2 cut(s)	79, 592
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	5 cut(s)	285, 477, 480, 854, 918
FokI	GGATG	5 cut(s)	250, 303, 308, 754, 785
Fsp4HI	GCNGC	5 cut(s)	285, 477, 480, 854, 918
FspBI	CTAG	5 cut(s)	230, 428, 434, 927, 969
GluI	GCNGC	5 cut(s)	285, 477, 480, 854, 918
HaeIII	GGCC	2 cut(s)	276, 698
HapII	CCGG	4 cut(s)	273, 288, 507, 814
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	4 cut(s)	137, 445, 541, 844
HindIII	AAGCTT	2 cut(s)	99, 562
HinfI	GANTC	7 cut(s)	248, 306, 315, 600, 633, 803, 930
HpaII	CCGG	4 cut(s)	273, 288, 507, 814
HphI	GGTGA	2 cut(s)	602, 803
Hpy166II	GTNNAC	2 cut(s)	45, 778
Hpy188I	TCNGA	2 cut(s)	163, 320
Hpy188III	TCNNGA	1 cut(s)	796
Hpy8I	GTNNAC	2 cut(s)	45, 778
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	148, 782
HpyCH4IV	ACGT	4 cut(s)	171, 373, 690, 902
HpyCH4V	TGCA	6 cut(s)	182, 419, 537, 653, 713, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	850, 923
HpyF3I	CTNAG	3 cut(s)	160, 805, 846
HpySE526I	ACGT	4 cut(s)	171, 373, 690, 902
Hsp92II	CATG	4 cut(s)	137, 445, 541, 844
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	2 cut(s)	79, 592
Kzo9I	GATC	2 cut(s)	79, 592
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	3 cut(s)	463, 840, 929
LweI	GCATC	3 cut(s)	210, 406, 826
MaeI	CTAG	5 cut(s)	230, 428, 434, 927, 969
MaeII	ACGT	4 cut(s)	171, 373, 690, 902
MaeIII	GTNAC	5 cut(s)	142, 746, 764, 800, 941
MalI	GATC	2 cut(s)	81, 594
MboI	GATC	2 cut(s)	79, 592
MboII	GAAGA	5 cut(s)	442, 445, 892, 901, 910
MluCI	AATT	8 cut(s)	49, 59, 63, 118, 467, 789, 828, 951
MlyI	GAGTC	2 cut(s)	627, 797
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	6 cut(s)	34, 169, 245, 248, 614, 661
Mph1103I	ATGCAT	2 cut(s)	539, 655
MroNI	GCCGGC	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	662
MseI	TTAA	5 cut(s)	54, 62, 69, 501, 960
MslI	CAYNNNNRTG	2 cut(s)	138, 532
MspI	CCGG	4 cut(s)	273, 288, 507, 814
MspR9I	CCNGG	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	739
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	2 cut(s)	850, 923
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	79, 592
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	4 cut(s)	137, 445, 541, 844
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	800, 941
NruI	TCGCGA	1 cut(s)	797
NsiI	ATGCAT	2 cut(s)	539, 655
NspI	RCATGY	2 cut(s)	137, 541
PcsI	WCGNNNNNNNCGW	2 cut(s)	687, 696
PdiI	GCCGGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	5 cut(s)	248, 306, 315, 600, 930
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	286, 478, 481, 855, 919
PleI	GAGTC	2 cut(s)	627, 797
PmaCI	CACGTG	1 cut(s)	691
PmlI	CACGTG	1 cut(s)	691
PpsI	GAGTC	2 cut(s)	627, 797
Ppu21I	YACGTR	2 cut(s)	374, 691
PshBI	ATTAAT	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	737
PspCI	CACGTG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	230
RruI	TCGCGA	1 cut(s)	797
RsaI	GTAC	3 cut(s)	44, 116, 717
RsaNI	GTAC	3 cut(s)	43, 115, 716
RseI	CAYNNNNRTG	2 cut(s)	138, 532
SaqAI	TTAA	5 cut(s)	54, 62, 69, 501, 960
SatI	GCNGC	5 cut(s)	285, 477, 480, 854, 918
Sau3AI	GATC	2 cut(s)	79, 592
SchI	GAGTC	2 cut(s)	627, 797
ScrFI	CCNGG	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	210, 406, 826
SfcI	CTRYAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	2 cut(s)	138, 532
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	8 cut(s)	49, 59, 63, 118, 467, 789, 828, 951
SsiI	CCGC	2 cut(s)	285, 479
SspMI	CTAG	5 cut(s)	230, 428, 434, 927, 969
StyD4I	CCNGG	1 cut(s)	737
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	2 cut(s)	148, 782
TaiI	ACGT	4 cut(s)	174, 376, 693, 905
TaqI	TCGA	4 cut(s)	414, 573, 666, 681
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	8 cut(s)	49, 59, 63, 118, 467, 789, 828, 951
TatI	WGTACW	3 cut(s)	42, 114, 715
TauI	GCSGC	2 cut(s)	287, 482
TfiI	GAWTC	5 cut(s)	248, 306, 315, 600, 930
Tru1I	TTAA	5 cut(s)	54, 62, 69, 501, 960
Tru9I	TTAA	5 cut(s)	54, 62, 69, 501, 960
TscAI	CASTG	2 cut(s)	42, 950
TseFI	GTSAC	2 cut(s)	800, 941
TseI	GCWGC	3 cut(s)	476, 853, 917
Tsp45I	GTSAC	2 cut(s)	800, 941
TspDTI	ATGAA	2 cut(s)	333, 400
TspRI	CASTG	2 cut(s)	42, 950
Tth111I	GACNNNGTC	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	62
XapI	RAATTY	3 cut(s)	49, 789, 828
XceI	RCATGY	2 cut(s)	137, 541
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	5 cut(s)	230, 428, 434, 927, 969
Zsp2I	ATGCAT	2 cut(s)	539, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.