Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009206

Physical Location & Seq

Genomic Coordinates Reverse (-)

45965021 .. 45967356

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGACTACCCAATGTGATCAGATGGCTTCGAAGCTCGCCTCCTCTTCCCCCTCTTCTTCTTCCAAATACCAGCATGCCTTTCTCTACGCCTTAATCTGCTCTTTATTCCTGGTACTCCTCGTTTCATCTTTCAGACTCAATGTTATCAACTCCAACTTCGTAAATTTCGTCGTCGTTCGACGGCAGCAGCAGCAGCAACCGGTCAAAAATCACAACGATAACGCCGTTAACGTGATCAAGGCCGTCTTCAAGAAATTGGGTAGAAGGAAGATAAAGGTCGGGTTGGTCAACGTAGACCACGACCACACTCAACTAATGCATGGATTAGAAGGTATAGACCCGGTTCCGGTGAGATTCGATCGAGTTGCTGCTGATCGGGAGTGGGAGAATTTTTTCCCGGAATGGATAGACGAAGACGGGAGATGGGGCCGCCCAAAGTGTCCGGAAATCCCCATGCCGAAGTTTGAGGATTACAAGGGCGTCGATGTGATACTGGCCAAGGTCCCATGTGGGACTAATATTGGGAGTGGTAAGAAGGAAGGGGTTAGGGATGTGTTTAGGTTACAAGTGAATTTGGTGGTGGCCAATATGGCGGCGAGGATAGGGTGGATGGATCCTGATTATGGTGCTCCTCATCGGACGGTGTACGTTGTGTTCATCGGATCTTGTGGGCCCATGGTGGAGATTTTCAGATGTGATGACTTAGTGATGCGTCAAGGGAATTATAGGGTTTATAAGCCTGAGATTGGGAGGCTGAAGCAGAAGGTGCTTATGCCTTTTGGGTCGTGTGAACTTGCCTCTGGTTATGCACGAGCAGTATCACTTCCCACCTCAAGGAACACACTGAATTACACAAATTTTAACCAATTAATTCTTAATCAACTTGATCATTCGGCAGGTAAAGAAGCTTGGAGACCAGAGTACAAATACCAACCGAGACATGCCTATGTAACAGTCTTACACTCCTCAGAAGCCTACGTTTGTGGTGCAATAGCTTTGGCTCAAAGCATCATACAAACCAACTCCACCAAAGACCTAGTCCTCCTCGCTGACGATTCCATCACTCCCACATCCATCGCCGGCCTACAAGCCGCCGGATGGGATGTCAGGCGAATCCAACGAATCCGAAGCGTCTTTTCCCAAAAGGGTTCATACAATGAGTGGAACTACAGCAAACTACGTGTATGGCAACTAACTGAATACTCCAAAGTCATTTTCATCGATGCAGACCTTCTAGTCCTAGAGAACATGGACATCTTCTTCACACACCCACAATTATCTGCTGCGGTGAACCACAAGCACTTATTTAACTCCGGCTTGATGGTTGTGGAACCATCTCAATGCATGTTTGAATACCTAATGCGAAAAAGCTTCAAAATCGAGCCTTACAATGGTGGTGATCAGGGATTCCTCAATGAAATCTTTACTTGGTGGCATAGACTCCCTTGGTGGCTAAATGCATTGAAAACTTTCGAGGGAAAGAGTATCGAAGAACACGTGATGGCCGATGACCTTTATGCAGTACATTATTTAGGGCTGAAGCCTTGGATGTGTTACAGAGATTATGATTGTAACTGGGATGTAGACAGTCGTCAAGTTTTCGCGAGTGACTCAGCTCACCGGAGATGGTGGCAAGTTTATGATGCCATGCCGAAGGAGCTGCAACCTTATTGTGGTTTGACACAGAAGACGGAGAAGAGTTTGAAGACGCGGAGAGCTAGAGCAGCTAATGCTAGTTTCGTTGATGGTCATTGGAAAATTGAGATTAAAGACCCTAGACAGCACCATCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

598

Amino Acids

68.84

Weight (kDa)

8.86

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	319 - 516	3.4e-11	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08990 AT1G54940
fragaria_vesca	FvH4_6g05790
malus_domestica	MD04G1205600.v1.1 MD12G1219700.v1.1
prunus_persica	Prupe.6G326400_v2.0.a1
pyrus_communis	pycom04g18190 pycom12g20520
rosa_chinensis	RchiOBHm_Chr3g0454711
rosa_laevigata	RLG00000025422
rosa_multiflora	Rmu_co8376565.1_g000001 Rmu_sc0001792.1_g000024 Rmu_sc0003140.1_g000006 Rmu_sc0017894.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424840
rosa_rugosa	Rorug03G0001600
rosa_samantha	Rh3AG061300 Rh3BG063100 Rh3CG062000 Rh3DG062900 Rh3DG063000
rosa_wichuraiana	Rw3G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AasI	GACNNNNNNGTC	1 cut(s)	1235
Acc36I	ACCTGC	1 cut(s)	887
AccI	GTMKAC	2 cut(s)	294, 1584
AccII	CGCG	2 cut(s)	1604, 1711
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	5 cut(s)	430, 593, 1092, 1286, 1711
AclWI	GGATC	3 cut(s)	608, 621, 670
AcoI	YGGCCR	3 cut(s)	495, 582, 1503
AcsI	RAATTY	4 cut(s)	163, 388, 571, 856
AcuI	CTGAAG	2 cut(s)	776, 1559
AcvI	CACGTG	1 cut(s)	1498
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	4 cut(s)	114, 647, 923, 1524
AfiI	CCNNNNNNNGG	7 cut(s)	346, 623, 746, 834, 1098, 1391, 1673
AflIII	ACRYGT	2 cut(s)	1180, 1495
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	250, 1352, 1375, 1465, 1705
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	1199, 1231
AluBI	AGCT	8 cut(s)	34, 908, 995, 1371, 1616, 1660, 1718, 1727
AluI	AGCT	8 cut(s)	34, 908, 995, 1371, 1616, 1660, 1718, 1727
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	2 cut(s)	907, 931
AlwI	GGATC	3 cut(s)	608, 621, 670
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	7 cut(s)	240, 427, 495, 582, 671, 1081, 1503
ApaI	GGGCCC	1 cut(s)	675
ApeKI	GCWGC	8 cut(s)	184, 187, 190, 193, 368, 1283, 1660, 1724
ApoI	RAATTY	4 cut(s)	163, 388, 571, 856
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
AseI	ATTAAT	1 cut(s)	869
AsiGI	ACCGGT	1 cut(s)	199
Asp700I	GAANNNNTTC	2 cut(s)	392, 1469
AspS9I	GGNCC	4 cut(s)	427, 502, 671, 672
AsuC2I	CCSGG	2 cut(s)	341, 398
AsuHPI	GGTGA	4 cut(s)	361, 1300, 1409, 1610
AsuII	TTCGAA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	675
BalI	TGGCCA	2 cut(s)	497, 584
BamHI	GGATCC	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	675
BauI	CACGAG	1 cut(s)	810
BbrPI	CACGTG	1 cut(s)	1498
BbsI	GAAGAC	4 cut(s)	238, 420, 1694, 1712
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	8 cut(s)	196, 199, 202, 205, 355, 1270, 1647, 1736
BceAI	ACGGC	3 cut(s)	197, 209, 227
BcgI	CGANNNNNNTGC	4 cut(s)	347, 381, 1642, 1676
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	4 cut(s)	16, 234, 886, 1399
BcnI	CCSGG	2 cut(s)	341, 398
BcoDI	GTCTC	2 cut(s)	907, 931
BfaI	CTAG	6 cut(s)	1037, 1235, 1241, 1719, 1734, 1776
BfmI	CTRYAG	1 cut(s)	1168
BfuAI	ACCTGC	1 cut(s)	887
BglI	GCCNNNNNGGC	1 cut(s)	590
Bme1390I	CCNGG	3 cut(s)	110, 341, 398
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	4 cut(s)	427, 502, 671, 672
BmiI	GGNNCC	6 cut(s)	345, 428, 504, 615, 673, 1332
BmrFI	CCNGG	3 cut(s)	110, 341, 398
BmrI	ACTGGG	1 cut(s)	1585
BmsI	GCATC	4 cut(s)	699, 1017, 1213, 1633
BmuI	ACTGGG	1 cut(s)	1585
BoxI	GACNNNNGTC	1 cut(s)	1590
BpiI	GAAGAC	4 cut(s)	238, 420, 1694, 1712
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	2 cut(s)	341, 398
Bsa29I	ATCGAT	1 cut(s)	1221
BsaAI	YACGTR	2 cut(s)	1181, 1498
BsaHI	GRCGYC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	907
BsaJI	CCNNGG	4 cut(s)	498, 675, 1445, 1544
BsaWI	WCCGGW	4 cut(s)	199, 346, 442, 1620
Bsc4I	CCNNNNNNNGG	7 cut(s)	346, 623, 746, 834, 1098, 1391, 1673
Bse118I	RCCGGY	2 cut(s)	199, 1079
Bse1I	ACTGG	2 cut(s)	498, 1580
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	1221
BseDI	CCNNGG	4 cut(s)	498, 675, 1445, 1544
BseGI	GGATG	7 cut(s)	556, 615, 1070, 1103, 1108, 1554, 1585
BseLI	CCNNNNNNNGG	7 cut(s)	346, 623, 746, 834, 1098, 1391, 1673
BseMII	CTCAG	3 cut(s)	732, 981, 1626
BseNI	ACTGG	2 cut(s)	498, 1580
BseRI	GAGGAG	5 cut(s)	31, 107, 621, 955, 1034
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	8 cut(s)	196, 199, 202, 205, 355, 1270, 1647, 1736
Bsh1236I	CGCG	2 cut(s)	1604, 1711
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	7 cut(s)	242, 429, 497, 584, 673, 1083, 1505
BshTI	ACCGGT	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	1221
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	9 cut(s)	200, 341, 347, 398, 443, 1080, 1095, 1314, 1621
BslFI	GGGAC	2 cut(s)	488, 526
BslI	CCNNNNNNNGG	7 cut(s)	346, 623, 746, 834, 1098, 1391, 1673
BsmAI	GTCTC	2 cut(s)	907, 931
BsmFI	GGGAC	2 cut(s)	488, 526
BsnI	GGCC	7 cut(s)	242, 429, 497, 584, 673, 1083, 1505
Bso31I	GGTCTC	1 cut(s)	907
Bsp119I	TTCGAA	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	631, 675
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
Bsp19I	CCATGG	1 cut(s)	675
Bsp68I	TCGCGA	1 cut(s)	1604
BspACI	CCGC	5 cut(s)	430, 593, 1092, 1286, 1711
BspANI	GGCC	7 cut(s)	242, 429, 497, 584, 673, 1083, 1505
BspCNI	CTCAG	3 cut(s)	733, 980, 1625
BspDI	ATCGAT	1 cut(s)	1221
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	1604, 1711
BspLI	GGNNCC	6 cut(s)	345, 428, 504, 615, 673, 1332
BspMI	ACCTGC	1 cut(s)	887
BspPI	GGATC	3 cut(s)	608, 621, 670
BspT104I	TTCGAA	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	907
BsrFI	RCCGGY	2 cut(s)	199, 1079
BsrI	ACTGG	2 cut(s)	498, 1580
BssAI	RCCGGY	2 cut(s)	199, 1079
BssECI	CCNNGG	4 cut(s)	498, 675, 1445, 1544
BssMI	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
BssNI	GRCGYC	1 cut(s)	480
BssSI	CACGAG	1 cut(s)	810
BssT1I	CCWWGG	4 cut(s)	498, 675, 1445, 1544
Bst2BI	CACGAG	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	643, 955, 1589
Bst6I	CTCTTC	3 cut(s)	49, 58, 1691
BstACI	GRCGYC	1 cut(s)	480
BstAPI	GCANNNNNTGC	2 cut(s)	766, 1730
BstBAI	YACGTR	2 cut(s)	1181, 1498
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	36, 75, 1081
BstDEI	CTNAG	4 cut(s)	703, 741, 967, 1612
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	7 cut(s)	556, 615, 1070, 1103, 1108, 1554, 1585
BstFNI	CGCG	2 cut(s)	1604, 1711
BstKTI	GATC	8 cut(s)	19, 237, 361, 376, 616, 665, 889, 1402
BstMAI	GTCTC	2 cut(s)	907, 931
BstMBI	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	7 cut(s)	190, 193, 590, 766, 1657, 1724, 1730
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	3 cut(s)	77, 944, 1348
BstPAI	GACNNNNGTC	1 cut(s)	1590
BstSCI	CCNGG	3 cut(s)	108, 339, 396
BstSFI	CTRYAG	1 cut(s)	1168
BstSLI	GKGCMC	1 cut(s)	675
BstUI	CGCG	2 cut(s)	1604, 1711
BstV1I	GCAGC	8 cut(s)	196, 199, 202, 205, 355, 1270, 1647, 1736
BstV2I	GAAGAC	4 cut(s)	238, 420, 1694, 1712
BstX2I	RGATCY	2 cut(s)	613, 662
BstYI	RGATCY	2 cut(s)	613, 662
Bsu15I	ATCGAT	1 cut(s)	1221
BsuRI	GGCC	7 cut(s)	242, 429, 497, 584, 673, 1083, 1505
BsuTUI	ATCGAT	1 cut(s)	1221
BtgI	CCRYGG	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	1060
BtsCI	GGATG	7 cut(s)	556, 615, 1070, 1103, 1108, 1554, 1585
BtsIMutI	CAGTG	1 cut(s)	842
BtuMI	TCGCGA	1 cut(s)	1604
BveI	ACCTGC	1 cut(s)	887
Cac8I	GCNNGC	3 cut(s)	36, 75, 1081
Cfr10I	RCCGGY	2 cut(s)	199, 1079
Cfr13I	GGNCC	4 cut(s)	427, 502, 671, 672
ClaI	ATCGAT	1 cut(s)	1221
CseI	GACGC	4 cut(s)	469, 701, 1120, 1717
Csp6I	GTAC	4 cut(s)	113, 646, 922, 1523
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	9 cut(s)	74, 320, 454, 507, 676, 941, 1249, 1345, 1648
CviQI	GTAC	4 cut(s)	113, 646, 922, 1523
DdeI	CTNAG	4 cut(s)	703, 741, 967, 1612
DpnI	GATC	8 cut(s)	18, 236, 360, 375, 615, 664, 888, 1401
DpnII	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
DrdI	GACNNNNNNGTC	1 cut(s)	1235
DseDI	GACNNNNNNGTC	1 cut(s)	1235
EaeI	YGGCCR	3 cut(s)	495, 582, 1503
Eam1104I	CTCTTC	3 cut(s)	49, 58, 1691
EarI	CTCTTC	3 cut(s)	49, 58, 1691
Eco130I	CCWWGG	4 cut(s)	498, 675, 1445, 1544
Eco24I	GRGCYC	1 cut(s)	675
Eco31I	GGTCTC	1 cut(s)	907
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	776, 1559
Eco72I	CACGTG	1 cut(s)	1498
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	4 cut(s)	498, 675, 1445, 1544
EcoT22I	ATGCAT	3 cut(s)	321, 1346, 1462
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	4 cut(s)	498, 675, 1445, 1544
FaeI	CATG	9 cut(s)	77, 323, 457, 510, 679, 944, 1252, 1348, 1651
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	2 cut(s)	488, 526
FatI	CATG	9 cut(s)	73, 319, 453, 506, 675, 940, 1248, 1344, 1647
FbaI	TGATCA	4 cut(s)	16, 234, 886, 1399
FblI	GTMKAC	2 cut(s)	294, 1584
FokI	GGATG	7 cut(s)	563, 622, 1057, 1110, 1115, 1561, 1592
FriOI	GRGCYC	1 cut(s)	675
FspBI	CTAG	6 cut(s)	1037, 1235, 1241, 1719, 1734, 1776
HaeIII	GGCC	7 cut(s)	242, 429, 497, 584, 673, 1083, 1505
HapII	CCGG	9 cut(s)	200, 341, 347, 398, 443, 1080, 1095, 1314, 1621
HgaI	GACGC	4 cut(s)	469, 701, 1120, 1717
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	9 cut(s)	77, 323, 457, 510, 679, 944, 1252, 1348, 1651
HincII	GTYRAC	2 cut(s)	229, 289
HindII	GTYRAC	2 cut(s)	229, 289
HindIII	AAGCTT	2 cut(s)	906, 1369
HinfI	GANTC	8 cut(s)	135, 354, 1055, 1113, 1122, 1407, 1440, 1610
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	9 cut(s)	200, 341, 347, 398, 443, 1080, 1095, 1314, 1621
HphI	GGTGA	4 cut(s)	361, 1300, 1409, 1610
Hpy166II	GTNNAC	7 cut(s)	229, 289, 295, 646, 791, 1291, 1585
Hpy188I	TCNGA	8 cut(s)	21, 134, 639, 662, 692, 970, 1127, 1791
Hpy188III	TCNNGA	5 cut(s)	250, 377, 443, 617, 1603
Hpy8I	GTNNAC	7 cut(s)	229, 289, 295, 646, 791, 1291, 1585
Hpy99I	CGWCG	4 cut(s)	173, 176, 183, 485
HpyAV	CCTTC	7 cut(s)	258, 323, 529, 533, 757, 1241, 1648
HpyCH4III	ACNGT	3 cut(s)	643, 955, 1589
HpyCH4IV	ACGT	6 cut(s)	231, 291, 648, 978, 1180, 1497
HpyCH4V	TGCA	8 cut(s)	319, 809, 989, 1226, 1344, 1460, 1520, 1663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	190, 193, 590, 766, 1657, 1724, 1730
HpyF3I	CTNAG	4 cut(s)	703, 741, 967, 1612
HpySE526I	ACGT	6 cut(s)	231, 291, 648, 978, 1180, 1497
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	9 cut(s)	77, 323, 457, 510, 679, 944, 1252, 1348, 1651
Kpn2I	TCCGGA	1 cut(s)	442
KroI	GCCGGC	1 cut(s)	1079
KroNI	GCCGGC	1 cut(s)	1081
Ksp22I	TGATCA	4 cut(s)	16, 234, 886, 1399
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
LmnI	GCTCC	2 cut(s)	634, 1657
Lsp1109I	GCAGC	8 cut(s)	196, 199, 202, 205, 355, 1270, 1647, 1736
LweI	GCATC	4 cut(s)	699, 1017, 1213, 1633
MaeI	CTAG	6 cut(s)	1037, 1235, 1241, 1719, 1734, 1776
MaeII	ACGT	6 cut(s)	231, 291, 648, 978, 1180, 1497
MaeIII	GTNAC	5 cut(s)	561, 949, 1553, 1571, 1607
MalI	GATC	8 cut(s)	18, 236, 360, 375, 615, 664, 888, 1401
MboI	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
MflI	RGATCY	2 cut(s)	613, 662
MhlI	GDGCHC	2 cut(s)	631, 675
MlsI	TGGCCA	2 cut(s)	497, 584
MluNI	TGGCCA	2 cut(s)	497, 584
MlyI	GAGTC	3 cut(s)	129, 1434, 1604
MmeI	TCCRAC	2 cut(s)	177, 1141
Mox20I	TGGCCA	2 cut(s)	497, 584
Mph1103I	ATGCAT	3 cut(s)	321, 1346, 1462
MroI	TCCGGA	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	1079
MroXI	GAANNNNTTC	2 cut(s)	392, 1469
MscI	TGGCCA	2 cut(s)	497, 584
MseI	TTAA	8 cut(s)	92, 228, 861, 869, 876, 1308, 1767, 1795
MslI	CAYNNNNRTG	2 cut(s)	945, 1339
Msp20I	TGGCCA	2 cut(s)	497, 584
MspI	CCGG	9 cut(s)	200, 341, 347, 398, 443, 1080, 1095, 1314, 1621
MspR9I	CCNGG	3 cut(s)	110, 341, 398
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	1604, 1711
MwoI	GCNNNNNNNGC	7 cut(s)	190, 193, 590, 766, 1657, 1724, 1730
NaeI	GCCGGC	1 cut(s)	1081
NciI	CCSGG	2 cut(s)	341, 398
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
NgoMIV	GCCGGC	1 cut(s)	1079
NlaIII	CATG	9 cut(s)	77, 323, 457, 510, 679, 944, 1252, 1348, 1651
NlaIV	GGNNCC	6 cut(s)	345, 428, 504, 615, 673, 1332
NmuCI	GTSAC	1 cut(s)	1607
NruI	TCGCGA	1 cut(s)	1604
NsiI	ATGCAT	3 cut(s)	321, 1346, 1462
NspI	RCATGY	3 cut(s)	77, 944, 1348
NspV	TTCGAA	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	6 cut(s)	165, 222, 228, 297, 1494, 1503
PdiI	GCCGGC	1 cut(s)	1081
PdmI	GAANNNNTTC	2 cut(s)	392, 1469
PfeI	GAWTC	5 cut(s)	354, 1055, 1113, 1122, 1407
PflFI	GACNNNGTC	1 cut(s)	1037
PfoI	TCCNGGA	1 cut(s)	396
PinAI	ACCGGT	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	3 cut(s)	129, 1434, 1604
PmaCI	CACGTG	1 cut(s)	1498
PmlI	CACGTG	1 cut(s)	1498
PpsI	GAGTC	3 cut(s)	129, 1434, 1604
Ppu21I	YACGTR	2 cut(s)	1181, 1498
PpuMI	RGGWCCY	1 cut(s)	502
PshAI	GACNNNNGTC	1 cut(s)	1590
PshBI	ATTAAT	1 cut(s)	869
PsiI	TTATAA	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	1498
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	345, 428, 504, 615, 673, 1332
PspOMI	GGGCCC	1 cut(s)	671
PspPI	GGNCC	4 cut(s)	427, 502, 671, 672
PspPPI	RGGWCCY	1 cut(s)	502
PsrI	GAACNNNNNNTAC	2 cut(s)	638, 670
PsuI	RGATCY	2 cut(s)	613, 662
PsyI	GACNNNGTC	1 cut(s)	1037
PvuI	CGATCG	1 cut(s)	361
RruI	TCGCGA	1 cut(s)	1604
RsaI	GTAC	4 cut(s)	114, 647, 923, 1524
RsaNI	GTAC	4 cut(s)	113, 646, 922, 1523
RseI	CAYNNNNRTG	2 cut(s)	945, 1339
SaqAI	TTAA	8 cut(s)	92, 228, 861, 869, 876, 1308, 1767, 1795
Sau3AI	GATC	8 cut(s)	16, 234, 358, 373, 613, 662, 886, 1399
Sau96I	GGNCC	4 cut(s)	427, 502, 671, 672
SchI	GAGTC	3 cut(s)	129, 1434, 1604
ScrFI	CCNGG	3 cut(s)	110, 341, 398
SduI	GDGCHC	2 cut(s)	631, 675
SfaNI	GCATC	4 cut(s)	699, 1017, 1213, 1633
SfcI	CTRYAG	1 cut(s)	1168
SfuI	TTCGAA	1 cut(s)	29
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	945, 1339
SmlI	CTYRAG	1 cut(s)	832
SmoI	CTYRAG	1 cut(s)	832
SphI	GCATGC	1 cut(s)	77
SsiI	CCGC	5 cut(s)	430, 593, 1092, 1286, 1711
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	6 cut(s)	1037, 1235, 1241, 1719, 1734, 1776
StyD4I	CCNGG	3 cut(s)	108, 339, 396
StyI	CCWWGG	4 cut(s)	498, 675, 1445, 1544
TaaI	ACNGT	3 cut(s)	643, 955, 1589
TaiI	ACGT	6 cut(s)	234, 294, 651, 981, 1183, 1500
TaqI	TCGA	9 cut(s)	29, 178, 357, 361, 483, 1221, 1380, 1473, 1488
TatI	WGTACW	2 cut(s)	921, 1522
TauI	GCSGC	3 cut(s)	432, 596, 1094
TfiI	GAWTC	5 cut(s)	354, 1055, 1113, 1122, 1407
Tru1I	TTAA	8 cut(s)	92, 228, 861, 869, 876, 1308, 1767, 1795
Tru9I	TTAA	8 cut(s)	92, 228, 861, 869, 876, 1308, 1767, 1795
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	1607
TseI	GCWGC	8 cut(s)	184, 187, 190, 193, 368, 1283, 1660, 1724
Tsp45I	GTSAC	1 cut(s)	1607
TspDTI	ATGAA	5 cut(s)	114, 646, 1140, 1207, 1431
TspGWI	ACGGA	1 cut(s)	1706
TspRI	CASTG	1 cut(s)	849
Tth111I	GACNNNGTC	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	502
VspI	ATTAAT	1 cut(s)	869
XapI	RAATTY	4 cut(s)	163, 388, 571, 856
XceI	RCATGY	3 cut(s)	77, 944, 1348
XmiI	GTMKAC	2 cut(s)	294, 1584
XmnI	GAANNNNTTC	2 cut(s)	392, 1469
XspI	CTAG	6 cut(s)	1037, 1235, 1241, 1719, 1734, 1776
Zsp2I	ATGCAT	3 cut(s)	321, 1346, 1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.