Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376565.1

Orthogroup ID

OG0009206

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 953

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 952 bp

atgcatttcgacattttgcaattgagtatcagatttttcaatatcaattttaatggttcagtatcacttcccacctcaaggaagacactgaattacacaaattttaaccaattaattcttaatcaacttgatcattcggcaggtaaagaagcttggagaccaaagtacaaataccgaccgagacatgcctatgtaacagtcttacactcctcagaagcctacgtttgtggtgcaatagctttggctcaaagcatcatacaaaccaactccaccaaagacctagtcctcctcgctgacgattccatcactcccacatccatcgccggcctacaagccgccggatgggatgtcaggcgaatccaacgaatccgaagcgtcttttcccaaaagggttcatacaatgagtggaactacagcaaactacgtgtatggcaactaactgaatactccaaagtcattttcatcgatgcagaccttctagtcctagaaaacatggacatcttcttcacatacccacaattatctgctgcggcgaaccacaagcacttatttaactccggcttgatggttttggaaccatctcaatgcatgtttgaatacctaatgcgaaaaagcttcaaaatcgagccttacaatggtggtgatcagggattcctcaacgaaatctttacttggtggcatagaatcccttggtggctaaatgcattgaaaactttcgagggaaagagtatcgaaaaacacgtgatggccgatgacctttatgcggtacattatttagggctgaagccctggatgtgttacagagattatgattgtaactgggatgtagacagtcatcaagttttcgcgagtgactcagctcaccggagatggtggcaaatttatgatgccatgcctaaggagctgcaaccttattgtggtttgacacagaagatggagaagagtttgaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

317

Amino Acids

37.16

Weight (kDa)

8.45

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08990 AT1G54940
fragaria_vesca	FvH4_6g05790
malus_domestica	MD04G1205600.v1.1 MD12G1219700.v1.1
prunus_persica	Prupe.6G326400_v2.0.a1
pyrus_communis	pycom04g18190 pycom12g20520
rosa_chinensis	RchiOBHm_Chr3g0454711
rosa_laevigata	RLG00000025422
rosa_multiflora	Rmu_co8376565.1_g000001 Rmu_sc0001792.1_g000024 Rmu_sc0003140.1_g000006 Rmu_sc0017894.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424840
rosa_rugosa	Rorug03G0001600
rosa_samantha	Rh3AG061300 Rh3BG063100 Rh3CG062000 Rh3DG062900 Rh3DG063000
rosa_wichuraiana	Rw3G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	828
AccII	CGCG	1 cut(s)	848
AciI	CCGC	3 cut(s)	336, 530, 764
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	100, 879
AcuI	CTGAAG	1 cut(s)	803
AcvI	CACGTG	1 cut(s)	742
AfaI	GTAC	2 cut(s)	167, 768
AfiI	CCNNNNNNNGG	5 cut(s)	78, 342, 635, 763, 917
AflIII	ACRYGT	2 cut(s)	424, 739
AgsI	TTSAA	5 cut(s)	40, 596, 619, 709, 949
AjnI	CCWGG	1 cut(s)	788
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	5 cut(s)	152, 239, 615, 860, 904
AluI	AGCT	5 cut(s)	152, 239, 615, 860, 904
Alw26I	GTCTC	2 cut(s)	151, 175
AoxI	GGCC	2 cut(s)	325, 747
ApeKI	GCWGC	2 cut(s)	527, 904
ApoI	RAATTY	2 cut(s)	100, 879
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AseI	ATTAAT	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	713
AsuHPI	GGTGA	2 cut(s)	653, 854
AxyI	CCTNAGG	1 cut(s)	897
BbrPI	CACGTG	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	514, 891
BccI	CCATC	8 cut(s)	311, 326, 336, 559, 586, 739, 864, 928
BciT130I	CCWGG	1 cut(s)	790
BclI	TGATCA	2 cut(s)	130, 643
BcoDI	GTCTC	2 cut(s)	151, 175
BfaI	CTAG	3 cut(s)	281, 479, 485
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	336, 528, 531, 905
BlsI	GCNGC	4 cut(s)	337, 529, 532, 906
Bme1390I	CCNGG	1 cut(s)	790
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	790
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	3 cut(s)	261, 457, 877
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	465
BsaAI	YACGTR	2 cut(s)	425, 742
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	689, 788
BsaWI	WCCGGW	1 cut(s)	864
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 342, 635, 763, 917
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	824
Bse21I	CCTNAGG	1 cut(s)	897
BseBI	CCWGG	1 cut(s)	790
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	689, 788
BseGI	GGATG	5 cut(s)	314, 347, 352, 798, 829
BseLI	CCNNNNNNNGG	5 cut(s)	78, 342, 635, 763, 917
BseMII	CTCAG	2 cut(s)	225, 870
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	2 cut(s)	199, 278
BseXI	GCAGC	2 cut(s)	514, 891
Bsh1236I	CGCG	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	327, 749
BshVI	ATCGAT	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	179
BsiSI	CCGG	4 cut(s)	324, 339, 558, 865
BslI	CCNNNNNNNGG	5 cut(s)	78, 342, 635, 763, 917
BsmAI	GTCTC	2 cut(s)	151, 175
BsnI	GGCC	2 cut(s)	327, 749
Bso31I	GGTCTC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	130, 643
Bsp68I	TCGCGA	1 cut(s)	848
BspACI	CCGC	3 cut(s)	336, 530, 764
BspANI	GGCC	2 cut(s)	327, 749
BspCNI	CTCAG	2 cut(s)	224, 869
BspDI	ATCGAT	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	848
BspLI	GGNNCC	1 cut(s)	576
BspMI	ACCTGC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	824
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	689, 788
BssMI	GATC	2 cut(s)	130, 643
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	2 cut(s)	199, 833
Bst6I	CTCTTC	1 cut(s)	935
BstBAI	YACGTR	2 cut(s)	425, 742
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	211, 856, 897
BstF5I	GGATG	5 cut(s)	314, 347, 352, 798, 829
BstFNI	CGCG	1 cut(s)	848
BstKTI	GATC	2 cut(s)	133, 646
BstMAI	GTCTC	2 cut(s)	151, 175
BstMBI	GATC	2 cut(s)	130, 643
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	901
BstNI	CCWGG	1 cut(s)	790
BstNSI	RCATGY	2 cut(s)	188, 592
BstSCI	CCNGG	1 cut(s)	788
BstSFI	CTRYAG	1 cut(s)	412
BstUI	CGCG	1 cut(s)	848
BstV1I	GCAGC	2 cut(s)	514, 891
BstV2I	GAAGAC	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	465
Bsu36I	CCTNAGG	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	327, 749
BsuTUI	ATCGAT	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	5 cut(s)	314, 347, 352, 798, 829
BtsIMutI	CAGTG	1 cut(s)	86
BtuMI	TCGCGA	1 cut(s)	848
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	465
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	166, 767
CviAII	CATG	4 cut(s)	185, 493, 589, 892
CviQI	GTAC	2 cut(s)	166, 767
DdeI	CTNAG	3 cut(s)	211, 856, 897
DpnI	GATC	2 cut(s)	132, 645
DpnII	GATC	2 cut(s)	130, 643
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
Eco130I	CCWWGG	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	803
Eco72I	CACGTG	1 cut(s)	742
Eco81I	CCTNAGG	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	689
EcoT22I	ATGCAT	3 cut(s)	6, 590, 706
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	4 cut(s)	188, 496, 592, 895
FatI	CATG	4 cut(s)	184, 492, 588, 891
FbaI	TGATCA	2 cut(s)	130, 643
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	4 cut(s)	336, 528, 531, 905
FokI	GGATG	5 cut(s)	301, 354, 359, 805, 836
Fsp4HI	GCNGC	4 cut(s)	336, 528, 531, 905
FspBI	CTAG	3 cut(s)	281, 479, 485
GluI	GCNGC	4 cut(s)	336, 528, 531, 905
HaeIII	GGCC	2 cut(s)	327, 749
HapII	CCGG	4 cut(s)	324, 339, 558, 865
HgaI	GACGC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	188, 496, 592, 895
HindIII	AAGCTT	2 cut(s)	150, 613
HinfI	GANTC	6 cut(s)	299, 357, 366, 651, 684, 854
HpaII	CCGG	4 cut(s)	324, 339, 558, 865
HphI	GGTGA	2 cut(s)	653, 854
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	3 cut(s)	32, 214, 371
Hpy188III	TCNNGA	1 cut(s)	847
Hpy8I	GTNNAC	1 cut(s)	829
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	199, 833
HpyCH4IV	ACGT	3 cut(s)	222, 424, 741
HpyCH4V	TGCA	7 cut(s)	4, 19, 233, 470, 588, 704, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	901
HpyF3I	CTNAG	3 cut(s)	211, 856, 897
HpySE526I	ACGT	3 cut(s)	222, 424, 741
Hsp92II	CATG	4 cut(s)	188, 496, 592, 895
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Ksp22I	TGATCA	2 cut(s)	130, 643
Kzo9I	GATC	2 cut(s)	130, 643
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	2 cut(s)	514, 891
LweI	GCATC	3 cut(s)	261, 457, 877
MaeI	CTAG	3 cut(s)	281, 479, 485
MaeII	ACGT	3 cut(s)	222, 424, 741
MaeIII	GTNAC	4 cut(s)	193, 797, 815, 851
MalI	GATC	2 cut(s)	132, 645
MboI	GATC	2 cut(s)	130, 643
MboII	GAAGA	5 cut(s)	94, 493, 496, 943, 952
MfeI	CAATTG	1 cut(s)	20
MluCI	AATT	8 cut(s)	20, 46, 91, 100, 110, 114, 518, 879
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	6 cut(s)	85, 220, 296, 299, 665, 712
Mph1103I	ATGCAT	3 cut(s)	6, 590, 706
MroNI	GCCGGC	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	713
MseI	TTAA	5 cut(s)	51, 105, 113, 120, 552
MslI	CAYNNNNRTG	2 cut(s)	189, 583
MspI	CCGG	4 cut(s)	324, 339, 558, 865
MspR9I	CCNGG	1 cut(s)	790
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	790
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	1 cut(s)	901
NaeI	GCCGGC	1 cut(s)	325
NdeII	GATC	2 cut(s)	130, 643
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	4 cut(s)	188, 496, 592, 895
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	851
NruI	TCGCGA	1 cut(s)	848
NsiI	ATGCAT	3 cut(s)	6, 590, 706
NspI	RCATGY	2 cut(s)	188, 592
PcsI	WCGNNNNNNNCGW	2 cut(s)	738, 747
PdiI	GCCGGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	5 cut(s)	299, 357, 366, 651, 684
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	337, 529, 532, 906
PleI	GAGTC	1 cut(s)	848
PmaCI	CACGTG	1 cut(s)	742
PmlI	CACGTG	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	848
Ppu21I	YACGTR	2 cut(s)	425, 742
PshBI	ATTAAT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	788
PspCI	CACGTG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	1 cut(s)	576
PsyI	GACNNNGTC	1 cut(s)	281
RruI	TCGCGA	1 cut(s)	848
RsaI	GTAC	2 cut(s)	167, 768
RsaNI	GTAC	2 cut(s)	166, 767
RseI	CAYNNNNRTG	2 cut(s)	189, 583
SaqAI	TTAA	5 cut(s)	51, 105, 113, 120, 552
SatI	GCNGC	4 cut(s)	336, 528, 531, 905
Sau3AI	GATC	2 cut(s)	130, 643
SchI	GAGTC	1 cut(s)	848
ScrFI	CCNGG	1 cut(s)	790
SfaNI	GCATC	3 cut(s)	261, 457, 877
SfcI	CTRYAG	1 cut(s)	412
SmiMI	CAYNNNNRTG	2 cut(s)	189, 583
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	8 cut(s)	20, 46, 91, 100, 110, 114, 518, 879
SsiI	CCGC	3 cut(s)	336, 530, 764
SspMI	CTAG	3 cut(s)	281, 479, 485
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	2 cut(s)	199, 833
TaiI	ACGT	3 cut(s)	225, 427, 744
TaqI	TCGA	5 cut(s)	9, 465, 624, 717, 732
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	8 cut(s)	20, 46, 91, 100, 110, 114, 518, 879
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	2 cut(s)	338, 533
TfiI	GAWTC	5 cut(s)	299, 357, 366, 651, 684
Tru1I	TTAA	5 cut(s)	51, 105, 113, 120, 552
Tru9I	TTAA	5 cut(s)	51, 105, 113, 120, 552
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	851
TseI	GCWGC	2 cut(s)	527, 904
Tsp45I	GTSAC	1 cut(s)	851
TspDTI	ATGAA	2 cut(s)	384, 451
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	113
XapI	RAATTY	2 cut(s)	100, 879
XceI	RCATGY	2 cut(s)	188, 592
XmiI	GTMKAC	1 cut(s)	828
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	3 cut(s)	281, 479, 485
Zsp2I	ATGCAT	3 cut(s)	6, 590, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.