Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017894.1

Orthogroup ID

OG0009206

Physical Location & Seq

Genomic Coordinates Forward (+)

1424 .. 2284

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017894.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgactaccccatgtgatcagatggcttcgaagctcgcctcctcctccccctcttcttcttccaaataccagcatgcctttctctacgccttaatcttctctttattcctggtactcctcgtttcatctttcagactcaatgttatcaactccaacttcgtaaatttcgtcgttgttcgtcggcagcagcagcaaccggtcaagaatcacaacgataaagccgttaacgtgatcaaggccgtcttcaagaaattgggtagaaggaagttgaaggtcgggttggtcaacgtagaccacgaccacacacagctaatgcatggattagaaggtatagacccggttcctgtgagattcgatagagttgctgctgatcggaagtgggaggattttttcccggattggatagacgaagacgagagatggggccgcccaaagtgtccggaaatccccatgccgaagtttgaggattacaagggcatcgatgtgatactggccaaggtcccatgtgggactaatattgggagtggtaagaaggaaggggttagggatgtgtttaggttacaagtgaatttggtggtggccaatatggcggcgaggatagggtggatggaccctgattatggtgctcctcatcggacggtgtacgttgtgttcgtcggatcttgtgggcccatggtggagattttcagatgtgatgacttagtgatgcgtgaagggaattatagggtttataagcctgagattgggaggctgaagcagaaggtgcttatgccttttgggtcgtgtgaacttgcctctggttatgcacgagcaggtaattatccgatccatgcgttatcttggttatcatattgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

286

Amino Acids

32.43

Weight (kDa)

9.18

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08990 AT1G54940
fragaria_vesca	FvH4_6g05790
malus_domestica	MD04G1205600.v1.1 MD12G1219700.v1.1
prunus_persica	Prupe.6G326400_v2.0.a1
pyrus_communis	pycom04g18190 pycom12g20520
rosa_chinensis	RchiOBHm_Chr3g0454711
rosa_laevigata	RLG00000025422
rosa_multiflora	Rmu_co8376565.1_g000001 Rmu_sc0001792.1_g000024 Rmu_sc0003140.1_g000006 Rmu_sc0017894.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424840
rosa_rugosa	Rorug03G0001600
rosa_samantha	Rh3AG061300 Rh3BG063100 Rh3CG062000 Rh3DG062900 Rh3DG063000
rosa_wichuraiana	Rw3G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
Acc36I	ACCTGC	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	2 cut(s)	427, 590
AclWI	GGATC	2 cut(s)	667, 820
AcoI	YGGCCR	2 cut(s)	492, 579
AcsI	RAATTY	2 cut(s)	163, 568
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	114, 644
AfiI	CCNNNNNNNGG	2 cut(s)	620, 743
AgeI	ACCGGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	247, 271
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	2 cut(s)	34, 310
AluI	AGCT	2 cut(s)	34, 310
Alw21I	GWGCWC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	667, 820
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	5 cut(s)	237, 424, 492, 579, 668
ApaI	GGGCCC	1 cut(s)	672
ApeKI	GCWGC	4 cut(s)	184, 187, 190, 365
ApoI	RAATTY	2 cut(s)	163, 568
AsiGI	ACCGGT	1 cut(s)	196
AspS9I	GGNCC	5 cut(s)	424, 499, 610, 668, 669
AsuC2I	CCSGG	2 cut(s)	338, 395
AsuII	TTCGAA	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	499, 610
BaeGI	GKGCMC	1 cut(s)	672
BalI	TGGCCA	2 cut(s)	494, 581
BanII	GRGCYC	1 cut(s)	672
BauI	CACGAG	1 cut(s)	807
BbsI	GAAGAC	2 cut(s)	235, 417
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	4 cut(s)	196, 199, 202, 352
BccI	CCATC	3 cut(s)	16, 414, 601
BceAI	ACGGC	2 cut(s)	206, 224
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	16, 231
BcnI	CCSGG	2 cut(s)	338, 395
BfuAI	ACCTGC	1 cut(s)	803
BglI	GCCNNNNNGGC	1 cut(s)	587
BisI	GCNGC	6 cut(s)	185, 188, 191, 366, 427, 591
BlsI	GCNGC	6 cut(s)	186, 189, 192, 367, 428, 592
Bme1390I	CCNGG	3 cut(s)	110, 338, 395
Bme18I	GGWCC	2 cut(s)	499, 610
BmgT120I	GGNCC	5 cut(s)	424, 499, 610, 668, 669
BmiI	GGNNCC	5 cut(s)	342, 425, 501, 612, 670
BmrFI	CCNGG	3 cut(s)	110, 338, 395
BmsI	GCATC	2 cut(s)	486, 696
BpiI	GAAGAC	2 cut(s)	235, 417
Bpu14I	TTCGAA	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	338, 395
Bsa29I	ATCGAT	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	495, 672
BsaWI	WCCGGW	2 cut(s)	196, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 743
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	495, 672
BseGI	GGATG	2 cut(s)	553, 612
BseLI	CCNNNNNNNGG	2 cut(s)	620, 743
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	4 cut(s)	31, 34, 107, 618
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	4 cut(s)	196, 199, 202, 352
BshFI	GGCC	5 cut(s)	239, 426, 494, 581, 670
BshTI	ACCGGT	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	4 cut(s)	197, 338, 395, 440
BslFI	GGGAC	2 cut(s)	485, 523
BslI	CCNNNNNNNGG	2 cut(s)	620, 743
BsmFI	GGGAC	2 cut(s)	485, 523
BsnI	GGCC	5 cut(s)	239, 426, 494, 581, 670
Bsp119I	TTCGAA	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	628, 672
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	5 cut(s)	16, 231, 370, 659, 825
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	2 cut(s)	427, 590
BspANI	GGCC	5 cut(s)	239, 426, 494, 581, 670
BspCNI	CTCAG	1 cut(s)	730
BspDI	ATCGAT	1 cut(s)	480
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	5 cut(s)	342, 425, 501, 612, 670
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	2 cut(s)	667, 820
BspT104I	TTCGAA	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	495, 672
BssMI	GATC	5 cut(s)	16, 231, 370, 659, 825
BssSI	CACGAG	1 cut(s)	807
BssT1I	CCWWGG	2 cut(s)	495, 672
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	36, 75
BstDEI	CTNAG	2 cut(s)	700, 738
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	553, 612
BstKTI	GATC	5 cut(s)	19, 234, 373, 662, 828
BstMBI	GATC	5 cut(s)	16, 231, 370, 659, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 587, 763
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	108, 336, 393
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	4 cut(s)	196, 199, 202, 352
BstV2I	GAAGAC	2 cut(s)	235, 417
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	5 cut(s)	239, 426, 494, 581, 670
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	553, 612
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	36, 75
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	5 cut(s)	424, 499, 610, 668, 669
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	113, 643
CspAI	ACCGGT	1 cut(s)	196
CviAII	CATG	7 cut(s)	12, 74, 317, 451, 504, 673, 830
CviQI	GTAC	2 cut(s)	113, 643
DdeI	CTNAG	2 cut(s)	700, 738
DpnI	GATC	5 cut(s)	18, 233, 372, 661, 827
DpnII	GATC	5 cut(s)	16, 231, 370, 659, 825
EaeI	YGGCCR	2 cut(s)	492, 579
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	495, 672
Eco24I	GRGCYC	1 cut(s)	672
Eco47I	GGWCC	2 cut(s)	499, 610
Eco57I	CTGAAG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	495, 672
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	2 cut(s)	495, 672
FaeI	CATG	7 cut(s)	15, 77, 320, 454, 507, 676, 833
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	2 cut(s)	485, 523
FatI	CATG	7 cut(s)	11, 73, 316, 450, 503, 672, 829
FbaI	TGATCA	2 cut(s)	16, 231
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	185, 188, 191, 366, 427, 591
FokI	GGATG	2 cut(s)	560, 619
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	6 cut(s)	185, 188, 191, 366, 427, 591
GluI	GCNGC	6 cut(s)	185, 188, 191, 366, 427, 591
HaeIII	GGCC	5 cut(s)	239, 426, 494, 581, 670
HapII	CCGG	4 cut(s)	197, 338, 395, 440
Hin1II	CATG	7 cut(s)	15, 77, 320, 454, 507, 676, 833
HincII	GTYRAC	2 cut(s)	226, 286
HindII	GTYRAC	2 cut(s)	226, 286
HinfI	GANTC	3 cut(s)	135, 205, 351
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	4 cut(s)	197, 338, 395, 440
Hpy166II	GTNNAC	5 cut(s)	226, 286, 292, 643, 788
Hpy188I	TCNGA	7 cut(s)	21, 134, 375, 636, 659, 689, 825
Hpy188III	TCNNGA	3 cut(s)	202, 247, 440
Hpy8I	GTNNAC	5 cut(s)	226, 286, 292, 643, 788
Hpy99I	CGWCG	3 cut(s)	173, 183, 659
HpyAV	CCTTC	7 cut(s)	255, 265, 320, 526, 530, 707, 754
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	228, 288, 645
HpyCH4V	TGCA	2 cut(s)	316, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 587, 763
HpyF3I	CTNAG	2 cut(s)	700, 738
HpySE526I	ACGT	3 cut(s)	228, 288, 645
Hsp92II	CATG	7 cut(s)	15, 77, 320, 454, 507, 676, 833
Kpn2I	TCCGGA	1 cut(s)	439
Ksp22I	TGATCA	2 cut(s)	16, 231
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	16, 231, 370, 659, 825
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	4 cut(s)	196, 199, 202, 352
LweI	GCATC	2 cut(s)	486, 696
MaeII	ACGT	3 cut(s)	228, 288, 645
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	5 cut(s)	18, 233, 372, 661, 827
MboI	GATC	5 cut(s)	16, 231, 370, 659, 825
MboII	GAAGA	6 cut(s)	45, 48, 51, 88, 235, 422
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	628, 672
MlsI	TGGCCA	2 cut(s)	494, 581
MluCI	AATT	5 cut(s)	163, 251, 568, 718, 817
MluNI	TGGCCA	2 cut(s)	494, 581
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	177, 637
Mox20I	TGGCCA	2 cut(s)	494, 581
Mph1103I	ATGCAT	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	439
MscI	TGGCCA	2 cut(s)	494, 581
MseI	TTAA	3 cut(s)	92, 225, 859
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	2 cut(s)	494, 581
MspI	CCGG	4 cut(s)	197, 338, 395, 440
MspR9I	CCNGG	3 cut(s)	110, 338, 395
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	190, 587, 763
NciI	CCSGG	2 cut(s)	338, 395
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	5 cut(s)	16, 231, 370, 659, 825
NlaIII	CATG	7 cut(s)	15, 77, 320, 454, 507, 676, 833
NlaIV	GGNNCC	5 cut(s)	342, 425, 501, 612, 670
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	4 cut(s)	165, 219, 294, 651
PfeI	GAWTC	2 cut(s)	205, 351
PfoI	TCCNGGA	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	196
PkrI	GCNGC	6 cut(s)	186, 189, 192, 367, 428, 592
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	499
PsiI	TTATAA	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	5 cut(s)	342, 425, 501, 612, 670
PspOMI	GGGCCC	1 cut(s)	668
PspPI	GGNCC	5 cut(s)	424, 499, 610, 668, 669
PspPPI	RGGWCCY	1 cut(s)	499
PsrI	GAACNNNNNNTAC	2 cut(s)	635, 667
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	2 cut(s)	114, 644
RsaNI	GTAC	2 cut(s)	113, 643
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	92, 225, 859
SatI	GCNGC	6 cut(s)	185, 188, 191, 366, 427, 591
Sau3AI	GATC	5 cut(s)	16, 231, 370, 659, 825
Sau96I	GGNCC	5 cut(s)	424, 499, 610, 668, 669
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	110, 338, 395
SduI	GDGCHC	2 cut(s)	628, 672
SfaNI	GCATC	2 cut(s)	486, 696
SfuI	TTCGAA	1 cut(s)	29
SinI	GGWCC	2 cut(s)	499, 610
SmiMI	CAYNNNNRTG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	5 cut(s)	163, 251, 568, 718, 817
SsiI	CCGC	2 cut(s)	427, 590
SspI	AATATT	1 cut(s)	517
StyD4I	CCNGG	3 cut(s)	108, 336, 393
StyI	CCWWGG	2 cut(s)	495, 672
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	231, 291, 648
TaqI	TCGA	3 cut(s)	29, 354, 480
TasI	AATT	5 cut(s)	163, 251, 568, 718, 817
TauI	GCSGC	2 cut(s)	429, 593
TfiI	GAWTC	2 cut(s)	205, 351
Tru1I	TTAA	3 cut(s)	92, 225, 859
Tru9I	TTAA	3 cut(s)	92, 225, 859
TseI	GCWGC	4 cut(s)	184, 187, 190, 365
TspDTI	ATGAA	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	499, 610
XapI	RAATTY	2 cut(s)	163, 568
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.