Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009206

Physical Location & Seq

Genomic Coordinates Forward (+)

4194652 .. 4195748

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG062900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACTACCCCATGTGATCAGATGGCTTCGAAGCTCGCCTCCTCCTCCCCCTCTTCGTCTTCCAAATACCAGCATGCCTTTCTCTACGCCTTAATCTTCTCTTTATTCCTGGTACTCCTCGTTTCATCTTTCAGACTCAATGTTATCAACTCCAACTTCGTAAATTTCGTCGTTGTTCGTCGGCAGCAGCAGCAGCAACCGGTCAAGAATCACAACGATAACGCCGTTAACGTGATCAAGGCCGTCTTCAAGAAATTGGGTAGAAGGAAGATGAAGGTCGGGTTGGTCAACGTAGACCACGACCACACACAGCTAATGCATGGATTAGAAGGTATAGACCCGGTTCCTGTGAGATTCGATAGAGTTGCTGCTGATCGGAAGTGGGAGGATTTTTTCCCGGATTGGATAGACGAAGACGAGAGATGGGGCCGCCCAAAGTGTCCGGAAATCCCCATGCCGAAGTTTGAGGATTACAAGGGCATCGATGTGATACTGGCCAAGGTCCCATGTGGGACTAATATTGGGAGTGGTAAGAAGGAAGGGGTTAGGGATGTGTTTAGGTTACAAGTGAATTTGGTGGTGGCCAATATGGCGGCGAGGATAGGGTGGATGGACCCTGATTATGGTGCTCCTCATCGGACGGTGTACGTTGTGTTCATCGGATCTTGTGGGCCCATGGTGGAGATTTTCAGATGTGATGACTTAGTGATGCGTCAAGGGAATTATAGGGTTTATAAGCCTGAGATTGGGAGGCTGAAGCAGAAGGTGCTTATGCCTTTTGGGTCTTGTGAACTTGCCTCTGGTTATGCACGAGCAGGTAATTATCCGATCCATGCATTATCTTGGTTATCATATTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

287

Amino Acids

32.62

Weight (kDa)

9.19

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08990 AT1G54940
fragaria_vesca	FvH4_6g05790
malus_domestica	MD04G1205600.v1.1 MD12G1219700.v1.1
prunus_persica	Prupe.6G326400_v2.0.a1
pyrus_communis	pycom04g18190 pycom12g20520
rosa_chinensis	RchiOBHm_Chr3g0454711
rosa_laevigata	RLG00000025422
rosa_multiflora	Rmu_co8376565.1_g000001 Rmu_sc0001792.1_g000024 Rmu_sc0003140.1_g000006 Rmu_sc0017894.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424840
rosa_rugosa	Rorug03G0001600
rosa_samantha	Rh3AG061300 Rh3BG063100 Rh3CG062000 Rh3DG062900 Rh3DG063000
rosa_wichuraiana	Rw3G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
Acc36I	ACCTGC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	430, 593
AclWI	GGATC	2 cut(s)	670, 823
AcoI	YGGCCR	2 cut(s)	495, 582
AcsI	RAATTY	2 cut(s)	163, 571
AcuI	CTGAAG	1 cut(s)	776
AfaI	GTAC	2 cut(s)	114, 647
AfiI	CCNNNNNNNGG	2 cut(s)	623, 746
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	2 cut(s)	34, 313
AluI	AGCT	2 cut(s)	34, 313
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	670, 823
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	5 cut(s)	240, 427, 495, 582, 671
ApaI	GGGCCC	1 cut(s)	675
ApeKI	GCWGC	5 cut(s)	184, 187, 190, 193, 368
ApoI	RAATTY	2 cut(s)	163, 571
AsiGI	ACCGGT	1 cut(s)	199
AspS9I	GGNCC	5 cut(s)	427, 502, 613, 671, 672
AsuC2I	CCSGG	2 cut(s)	341, 398
AsuII	TTCGAA	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	502, 613
BaeGI	GKGCMC	1 cut(s)	675
BalI	TGGCCA	2 cut(s)	497, 584
BanII	GRGCYC	1 cut(s)	675
BauI	CACGAG	1 cut(s)	810
BbsI	GAAGAC	3 cut(s)	51, 238, 420
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	5 cut(s)	196, 199, 202, 205, 355
BccI	CCATC	3 cut(s)	16, 417, 604
BceAI	ACGGC	2 cut(s)	209, 227
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	16, 234
BcnI	CCSGG	2 cut(s)	341, 398
BfuAI	ACCTGC	1 cut(s)	806
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	7 cut(s)	185, 188, 191, 194, 369, 430, 594
BlsI	GCNGC	7 cut(s)	186, 189, 192, 195, 370, 431, 595
Bme1390I	CCNGG	3 cut(s)	110, 341, 398
Bme18I	GGWCC	2 cut(s)	502, 613
BmgT120I	GGNCC	5 cut(s)	427, 502, 613, 671, 672
BmiI	GGNNCC	5 cut(s)	345, 428, 504, 615, 673
BmrFI	CCNGG	3 cut(s)	110, 341, 398
BmsI	GCATC	2 cut(s)	489, 699
BpiI	GAAGAC	3 cut(s)	51, 238, 420
Bpu14I	TTCGAA	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	341, 398
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	498, 675
BsaWI	WCCGGW	2 cut(s)	199, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 746
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	498, 675
BseGI	GGATG	2 cut(s)	556, 615
BseLI	CCNNNNNNNGG	2 cut(s)	623, 746
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	4 cut(s)	31, 34, 107, 621
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	5 cut(s)	196, 199, 202, 205, 355
BshFI	GGCC	5 cut(s)	242, 429, 497, 584, 673
BshTI	ACCGGT	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	4 cut(s)	200, 341, 398, 443
BslFI	GGGAC	2 cut(s)	488, 526
BslI	CCNNNNNNNGG	2 cut(s)	623, 746
BsmFI	GGGAC	2 cut(s)	488, 526
BsnI	GGCC	5 cut(s)	242, 429, 497, 584, 673
Bsp119I	TTCGAA	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	631, 675
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	5 cut(s)	16, 234, 373, 662, 828
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	2 cut(s)	430, 593
BspANI	GGCC	5 cut(s)	242, 429, 497, 584, 673
BspCNI	CTCAG	1 cut(s)	733
BspDI	ATCGAT	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	442
BspLI	GGNNCC	5 cut(s)	345, 428, 504, 615, 673
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	2 cut(s)	670, 823
BspT104I	TTCGAA	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	498, 675
BssMI	GATC	5 cut(s)	16, 234, 373, 662, 828
BssSI	CACGAG	1 cut(s)	810
BssT1I	CCWWGG	2 cut(s)	498, 675
Bst2BI	CACGAG	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	36, 75
BstDEI	CTNAG	2 cut(s)	703, 741
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	2 cut(s)	556, 615
BstKTI	GATC	5 cut(s)	19, 237, 376, 665, 831
BstMBI	GATC	5 cut(s)	16, 234, 373, 662, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 193, 590, 766
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	108, 339, 396
BstSLI	GKGCMC	1 cut(s)	675
BstV1I	GCAGC	5 cut(s)	196, 199, 202, 205, 355
BstV2I	GAAGAC	3 cut(s)	51, 238, 420
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	5 cut(s)	242, 429, 497, 584, 673
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	2 cut(s)	556, 615
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	2 cut(s)	36, 75
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	5 cut(s)	427, 502, 613, 671, 672
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	113, 646
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	7 cut(s)	12, 74, 320, 454, 507, 676, 833
CviQI	GTAC	2 cut(s)	113, 646
DdeI	CTNAG	2 cut(s)	703, 741
DpnI	GATC	5 cut(s)	18, 236, 375, 664, 830
DpnII	GATC	5 cut(s)	16, 234, 373, 662, 828
EaeI	YGGCCR	2 cut(s)	495, 582
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	498, 675
Eco24I	GRGCYC	1 cut(s)	675
Eco47I	GGWCC	2 cut(s)	502, 613
Eco57I	CTGAAG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	498, 675
EcoT22I	ATGCAT	2 cut(s)	321, 838
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	2 cut(s)	498, 675
FaeI	CATG	7 cut(s)	15, 77, 323, 457, 510, 679, 836
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	2 cut(s)	488, 526
FatI	CATG	7 cut(s)	11, 73, 319, 453, 506, 675, 832
FbaI	TGATCA	2 cut(s)	16, 234
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	7 cut(s)	185, 188, 191, 194, 369, 430, 594
FokI	GGATG	2 cut(s)	563, 622
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	7 cut(s)	185, 188, 191, 194, 369, 430, 594
GluI	GCNGC	7 cut(s)	185, 188, 191, 194, 369, 430, 594
HaeIII	GGCC	5 cut(s)	242, 429, 497, 584, 673
HapII	CCGG	4 cut(s)	200, 341, 398, 443
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	7 cut(s)	15, 77, 323, 457, 510, 679, 836
HincII	GTYRAC	2 cut(s)	229, 289
HindII	GTYRAC	2 cut(s)	229, 289
HinfI	GANTC	3 cut(s)	135, 208, 354
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	4 cut(s)	200, 341, 398, 443
Hpy166II	GTNNAC	5 cut(s)	229, 289, 295, 646, 791
Hpy188I	TCNGA	7 cut(s)	21, 134, 378, 639, 662, 692, 828
Hpy188III	TCNNGA	3 cut(s)	205, 250, 443
Hpy8I	GTNNAC	5 cut(s)	229, 289, 295, 646, 791
Hpy99I	CGWCG	2 cut(s)	173, 183
HpyAV	CCTTC	6 cut(s)	258, 268, 323, 529, 533, 757
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	3 cut(s)	231, 291, 648
HpyCH4V	TGCA	3 cut(s)	319, 809, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 193, 590, 766
HpyF3I	CTNAG	2 cut(s)	703, 741
HpySE526I	ACGT	3 cut(s)	231, 291, 648
Hsp92II	CATG	7 cut(s)	15, 77, 323, 457, 510, 679, 836
Kpn2I	TCCGGA	1 cut(s)	442
Ksp22I	TGATCA	2 cut(s)	16, 234
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	16, 234, 373, 662, 828
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	5 cut(s)	196, 199, 202, 205, 355
LweI	GCATC	2 cut(s)	489, 699
MaeII	ACGT	3 cut(s)	231, 291, 648
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	5 cut(s)	18, 236, 375, 664, 830
MboI	GATC	5 cut(s)	16, 234, 373, 662, 828
MboII	GAAGA	6 cut(s)	45, 51, 88, 238, 280, 425
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	2 cut(s)	631, 675
MlsI	TGGCCA	2 cut(s)	497, 584
MluCI	AATT	5 cut(s)	163, 254, 571, 721, 820
MluNI	TGGCCA	2 cut(s)	497, 584
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	177
Mox20I	TGGCCA	2 cut(s)	497, 584
Mph1103I	ATGCAT	2 cut(s)	321, 838
MroI	TCCGGA	1 cut(s)	442
MscI	TGGCCA	2 cut(s)	497, 584
MseI	TTAA	3 cut(s)	92, 228, 862
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	2 cut(s)	497, 584
MspI	CCGG	4 cut(s)	200, 341, 398, 443
MspR9I	CCNGG	3 cut(s)	110, 341, 398
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	4 cut(s)	190, 193, 590, 766
NciI	CCSGG	2 cut(s)	341, 398
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	5 cut(s)	16, 234, 373, 662, 828
NlaIII	CATG	7 cut(s)	15, 77, 323, 457, 510, 679, 836
NlaIV	GGNNCC	5 cut(s)	345, 428, 504, 615, 673
NsiI	ATGCAT	2 cut(s)	321, 838
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	4 cut(s)	165, 222, 228, 297
PfeI	GAWTC	2 cut(s)	208, 354
PfoI	TCCNGGA	1 cut(s)	396
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	7 cut(s)	186, 189, 192, 195, 370, 431, 595
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	5 cut(s)	345, 428, 504, 615, 673
PspOMI	GGGCCC	1 cut(s)	671
PspPI	GGNCC	5 cut(s)	427, 502, 613, 671, 672
PspPPI	RGGWCCY	1 cut(s)	502
PsrI	GAACNNNNNNTAC	2 cut(s)	638, 670
PsuI	RGATCY	1 cut(s)	662
RsaI	GTAC	2 cut(s)	114, 647
RsaNI	GTAC	2 cut(s)	113, 646
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	3 cut(s)	92, 228, 862
SatI	GCNGC	7 cut(s)	185, 188, 191, 194, 369, 430, 594
Sau3AI	GATC	5 cut(s)	16, 234, 373, 662, 828
Sau96I	GGNCC	5 cut(s)	427, 502, 613, 671, 672
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	110, 341, 398
SduI	GDGCHC	2 cut(s)	631, 675
SfaNI	GCATC	2 cut(s)	489, 699
SfuI	TTCGAA	1 cut(s)	29
SinI	GGWCC	2 cut(s)	502, 613
SmiMI	CAYNNNNRTG	1 cut(s)	485
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	5 cut(s)	163, 254, 571, 721, 820
SsiI	CCGC	2 cut(s)	430, 593
SspI	AATATT	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	108, 339, 396
StyI	CCWWGG	2 cut(s)	498, 675
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	3 cut(s)	234, 294, 651
TaqI	TCGA	3 cut(s)	29, 357, 483
TasI	AATT	5 cut(s)	163, 254, 571, 721, 820
TauI	GCSGC	2 cut(s)	432, 596
TfiI	GAWTC	2 cut(s)	208, 354
Tru1I	TTAA	3 cut(s)	92, 228, 862
Tru9I	TTAA	3 cut(s)	92, 228, 862
TseI	GCWGC	5 cut(s)	184, 187, 190, 193, 368
TspDTI	ATGAA	3 cut(s)	114, 287, 646
VpaK11BI	GGWCC	2 cut(s)	502, 613
XapI	RAATTY	2 cut(s)	163, 571
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	294
Zsp2I	ATGCAT	2 cut(s)	321, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.