Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

168615 .. 175909

Gene Structure 7295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGTTTTATTTTGGTTATAAAAGGAGTCTGATATTATTTTTTCTCAAGCGAAAAAAAAATTATTTCGTTATTTTTGTGTTGGATCCAAAATTATATCTGTTTGCCGCTCTCCACCCACCAAATCACCCGCTTCTTTTATTTTCGTTCAGAAAAGAATTCCAAAAGGTTTGGGAAATGACGTGCGAAGTGGTGGTAATCGATGGCCCAAGTGGCCAGAAAACAAAGGGTCAAGATCTAGTGAACAAGACCAAGAAGCGGAAGAGGGGTAGCAAGGGCCCAGAAGATTTAGGGGTTGAGGAGAAAGAGGCTAAGATTGGGTTGTTTCGCAAAGAGCTTGATGGGTTGTTTGGGTACTACAGGGAAGTGATGAGTGAGAGAGGGTGCTTAGATTTGAAGCAATTTGGTAACGATTTGAAATCGGTCATTGGGGCTTTGATGGAAGAGAGTGCGCTGCCATTGTCAAAGCTTGTTGACGAGGTCTTCCAGAAGCTCAAGAACGGAAATGATGCTTTCGGGGATGTGACGTTGGCCACCGTGAAGAAGATTGTGCTCTTGGTTGGCCAGAGAGAAATGTACGGCGTGCCTAATGCCGATGCCGATGTGTTGGAGGACGAATCTGAATCCTGTCTCTGGTGTTGGGAGACAAGGGATGTAAAGTTGATGCCAGCTTCCGTGCGTGGGGTATTGAATATTAGGCGTACCTGTCGAAGAAAGATCAATGAAAGGATTACTGCTGTTTCTGCAATGATAATGGCATTACAAAAGCCGGAGAGTGATCAAAGCTACATTCAGGAGCTGATGAAGGCATCGGAAATGATTGATAAAGCTTCCTGTGAGGCAAAGATTCGCTCATTAATGGATCGCCTATCACTGAAAAATAGTGCAGACATGGTAAAAAAGCAAGCAAAAAGAGAGGAGAAACTGCAAATCAAACAAATGGAGCGAGATAAACGAGAGGCTGAGAAAGAGAAACAAAGATTGGAACGTGAGCGTCAAAAAGAAGAGCTGCAAAATGAGAAGGAGCAAAAGCGGCTGCTAGAGGAGTCAGAAAAAGTTGAAAAGCGTCGGGAAAAAGAAGAATCTGAAATAAGGAAACTACGGAGGAAGCAGCAAGAAGATGCTGAAAAAGAACAACGGCGCCGGGAGAAGGAAGAAGCTAAACTGAAAGATCAACTTTCCATAAAAAAGCAAGCTTCAATCATGGATCGTTTTCTTAAAAGAACCAAACCCAGCCCTGCATGCCAGAATGACCAATTACCAACTAAAGGAACTGTATCTATTTCATCAAGTAAGAACGATGAAAATTTGTCTGAGGCAGTTACTCAGTCAATGGACCACACCCTTTCATCTAATGACAAATTTAGTGCCCAGGATATCCGCAGGTCGCACTTGTCTTCTTGGCGCCATTTAGGTCATTCTATTCGTTCAAACAGAAACCAAAGTTGGGGAATACGTCGGAAGCCTAAGAGTGAGCTATTTAAGGAACTCAAGCTGACAACCAGTAAAGAACTAGTTCATGGTGATGATAGCATGGAGAAACTTGTAGATAGATGGGGAGAACCTGTTGATGATGAGAGATCATGTCAAATTCTTGCTGAGGTCAAGAAATTCAAATCAAGAAAGCAGTTGTTACAATTTGATAAGAGCCATAGACCTGCATTTTATGGTATATGGTCCAAGAAAAGTCATGTTGTTCGACCGTGTCACCCTCTTAGGAAGGACCCAGACTTGGATTACGATATCGATAGTGATGAGGACTGGGAAGAGGAGGATCCTGGTGAGAGCCTCTCTGATTGCGATAAAGACGATGAAGGAGAAAGTTTAGAAGAGGGATGTTCAAAAGCTGATGATGAAGATGAAAGTGAAGATGGTTTTTTCGTACCAGATGGCTATCTCTCAGAAAATGAGGGAGTAGAAGTGGACAGGATGGAAACTGATATCACATGTGAGGAGACCAAATCACCCAGTTGTAAGCAAGATTCAGAGAGCGAGAAATTCTCTTCTTTGCTTCGGCAGCAAAAGTATTTAGGAAATTTGACAGAACGTGCTCTTCAGAAAAATCAACCTTTAATCATATCAAATTTGATGCATGAGAAGGCATCTTTGCTAATGGTTCAAGATCTTAGTGGTACTCCTAAGCTGGAACAGATGTGCTTGCAAGCTCTGAGTATGCATGTGTTTCCTGGTGACTCATTGGTGGAGATAACAGTTGATGGCATGCAAGAAGAAGACCCAGAGGTTTACCTTTTAAACGGCAAGTGCAGTATTAAATCAAGCTCTGCTGTGGCTGTTATACCGGAATTAGATCTGCCTGCAATAGTGTCTGTCATTCAGTCGTGCTCCCAAAGTATCAATAAGGTGTTACAAGCTTTGCAGCAGAAGTTCCCAGCTGCTTCAAAGACTCAGTTAAGGAATAAAGTGCGAGAGATATCAGATTTTGTGGATAACCATTGGCAGGTCAAGAGGGAAATTCTGGACAAAGTTGGCTTGTCAATGTCTCCTGAAAAGAGTGCTGGGCTGCCCAAAAGTATTACTGCCTTTTTTTCAAAAAGGTGCTTGCCACCCAATGGTAAAAGCATCAACCCTAATGAAACCTCACCTCAGCAAGCTGTGAAGCCAGGTTCTGCTGTTGAAGGGCAGCAAAGTTGCACATACGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

887

Amino Acids

101.58

Weight (kDa)

6.47

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1A_dimeriz	PF12253	542 - 607	6.2e-19	Chromatin assembly factor 1 subunit A dimerization domain
Cac1_C	PF21796	770 - 820	1.7e-20	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
Acc36I	ACCTGC	3 cut(s)	1371, 1663, 2446
AccB1I	GGYRCC	2 cut(s)	1137, 1401
AccB7I	CCANNNNNTGG	1 cut(s)	2567
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	5 cut(s)	105, 128, 256, 1030, 1378
AclWI	GGATC	6 cut(s)	77, 90, 867, 1212, 1766, 1779
AcoI	YGGCCR	3 cut(s)	211, 528, 559
AcsI	RAATTY	9 cut(s)	155, 1303, 1358, 1587, 1607, 1994, 2032, 2080, 2469
AcuI	CTGAAG	1 cut(s)	2036
AcyI	GRCGYC	2 cut(s)	1138, 1402
AfaI	GTAC	5 cut(s)	353, 575, 700, 1881, 2131
AfiI	CCNNNNNNNGG	9 cut(s)	255, 630, 678, 1147, 1265, 1444, 1729, 2455, 2567
AflIII	ACRYGT	1 cut(s)	1943
AhlI	ACTAGT	1 cut(s)	1510
AjiI	CACGTC	1 cut(s)	180
AjnI	CCWGG	4 cut(s)	1368, 1774, 2182, 2617
AjuI	GAANNNNNNNTTGG	4 cut(s)	962, 994, 1426, 1458
Alw21I	GWGCWC	3 cut(s)	552, 2050, 2342
Alw26I	GTCTC	5 cut(s)	632, 635, 1946, 2502, 2652
AlwI	GGATC	6 cut(s)	77, 90, 867, 1212, 1766, 1779
AlwNI	CAGNNNCTG	2 cut(s)	796, 2624
AoxI	GGCC	5 cut(s)	202, 211, 274, 528, 559
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	9 cut(s)	451, 1006, 1033, 1108, 2014, 2374, 2390, 2518, 2638
ApoI	RAATTY	9 cut(s)	155, 1303, 1358, 1587, 1607, 1994, 2032, 2080, 2469
AseI	ATTAAT	1 cut(s)	854
Asp700I	GAANNNNTTC	1 cut(s)	1512
AspLEI	GCGC	3 cut(s)	451, 1140, 1404
AspS9I	GGNCC	6 cut(s)	203, 274, 275, 1333, 1674, 1720
AsuC2I	CCSGG	1 cut(s)	1142
AsuHPI	GGTGA	7 cut(s)	116, 1532, 1697, 1790, 1953, 2198, 2589
AvaII	GGWCC	3 cut(s)	1333, 1674, 1720
BaeGI	GKGCMC	2 cut(s)	278, 1369
BalI	TGGCCA	3 cut(s)	213, 530, 561
BamHI	GGATCC	2 cut(s)	82, 1771
BanI	GGYRCC	2 cut(s)	1137, 1401
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	3 cut(s)	472, 1386, 2235
Bbv12I	GWGCWC	3 cut(s)	552, 2050, 2342
BbvCI	CCTCAGC	2 cut(s)	1596, 2601
BbvI	GCAGC	9 cut(s)	438, 993, 1020, 1120, 2026, 2377, 2386, 2505, 2650
BccI	CCATC	8 cut(s)	194, 332, 430, 1545, 1862, 1880, 1921, 2207
BceAI	ACGGC	3 cut(s)	592, 1151, 2269
BciT130I	CCWGG	4 cut(s)	1370, 1776, 2184, 2619
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	1142
BcoDI	GTCTC	5 cut(s)	632, 635, 1946, 2502, 2652
BcuI	ACTAGT	1 cut(s)	1510
BfaI	CTAG	3 cut(s)	236, 1037, 1511
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	2 cut(s)	1141, 1405
BfuAI	ACCTGC	3 cut(s)	1371, 1663, 2446
BglI	GCCNNNNNGGC	1 cut(s)	210
BglII	AGATCT	3 cut(s)	232, 2119, 2305
Bme1390I	CCNGG	5 cut(s)	1142, 1370, 1776, 2184, 2619
Bme18I	GGWCC	3 cut(s)	1333, 1674, 1720
BmgBI	CACGTC	1 cut(s)	180
BmgT120I	GGNCC	6 cut(s)	203, 274, 275, 1333, 1674, 1720
BmiI	GGNNCC	6 cut(s)	84, 276, 1139, 1403, 1722, 1773
BmrFI	CCNGG	5 cut(s)	1142, 1370, 1776, 2184, 2619
BmrI	ACTGGG	2 cut(s)	1768, 1959
BmsI	GCATC	8 cut(s)	496, 583, 651, 815, 1108, 2076, 2108, 2586
BmuI	ACTGGG	2 cut(s)	1768, 1959
BpiI	GAAGAC	3 cut(s)	472, 1386, 2235
BplI	GAGNNNNNCTC	4 cut(s)	1772, 1804, 1982, 2014
Bpu10I	CCTNAGC	3 cut(s)	1596, 2136, 2601
BpuEI	CTTGAG	3 cut(s)	29, 476, 1472
BpuMI	CCSGG	1 cut(s)	1142
Bsa29I	ATCGAT	2 cut(s)	198, 1743
BsaBI	GATNNNNATC	1 cut(s)	1890
BsaHI	GRCGYC	2 cut(s)	1138, 1402
BsaI	GGTCTC	1 cut(s)	1946
BsaJI	CCNNGG	1 cut(s)	1368
BsaWI	WCCGGW	1 cut(s)	2296
BsaXI	ACNNNNNCTCC	4 cut(s)	1548, 1578, 1902, 1932
Bsc4I	CCNNNNNNNGG	9 cut(s)	255, 630, 678, 1147, 1265, 1444, 1729, 2455, 2567
Bse1I	ACTGG	3 cut(s)	1500, 1763, 1965
Bse3DI	GCAATG	1 cut(s)	750
Bse8I	GATNNNNATC	1 cut(s)	1890
BseBI	CCWGG	4 cut(s)	1370, 1776, 2184, 2619
BseCI	ATCGAT	2 cut(s)	198, 1743
BseDI	CCNNGG	1 cut(s)	1368
BseGI	GGATG	4 cut(s)	523, 655, 1838, 1932
BseJI	GATNNNNATC	1 cut(s)	1890
BseLI	CCNNNNNNNGG	9 cut(s)	255, 630, 678, 1147, 1265, 1444, 1729, 2455, 2567
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	8 cut(s)	951, 1302, 1337, 1587, 1911, 2156, 2417, 2615
BseNI	ACTGG	3 cut(s)	1500, 1763, 1965
BseRI	GAGGAG	5 cut(s)	311, 929, 1055, 1781, 1964
BseSI	GKGCMC	2 cut(s)	278, 1369
BseXI	GCAGC	9 cut(s)	438, 993, 1020, 1120, 2026, 2377, 2386, 2505, 2650
BseYI	CCCAGC	3 cut(s)	1229, 2386, 2513
BsgI	GTGCAG	2 cut(s)	903, 2281
Bsh1285I	CGRYCG	1 cut(s)	1700
BshFI	GGCC	5 cut(s)	204, 213, 276, 530, 561
BshNI	GGYRCC	2 cut(s)	1137, 1401
BshVI	ATCGAT	2 cut(s)	198, 1743
BsiEI	CGRYCG	1 cut(s)	1700
BsiHKAI	GWGCWC	3 cut(s)	552, 2050, 2342
BsiSI	CCGG	3 cut(s)	767, 1141, 2297
BslI	CCNNNNNNNGG	9 cut(s)	255, 630, 678, 1147, 1265, 1444, 1729, 2455, 2567
BsmAI	GTCTC	5 cut(s)	632, 635, 1946, 2502, 2652
BsnI	GGCC	5 cut(s)	204, 213, 276, 530, 561
Bso31I	GGTCTC	1 cut(s)	1946
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	5 cut(s)	278, 552, 1369, 2050, 2342
BspACI	CCGC	5 cut(s)	105, 128, 256, 1030, 1378
BspANI	GGCC	5 cut(s)	204, 213, 276, 530, 561
BspCNI	CTCAG	8 cut(s)	952, 1303, 1336, 1588, 1910, 2157, 2416, 2614
BspDI	ATCGAT	2 cut(s)	198, 1743
BspLI	GGNNCC	6 cut(s)	84, 276, 1139, 1403, 1722, 1773
BspMI	ACCTGC	3 cut(s)	1371, 1663, 2446
BspPI	GGATC	6 cut(s)	77, 90, 867, 1212, 1766, 1779
BspQI	GCTCTTC	2 cut(s)	996, 2055
BspT107I	GGYRCC	2 cut(s)	1137, 1401
BspTNI	GGTCTC	1 cut(s)	1946
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	750
BsrI	ACTGG	3 cut(s)	1500, 1763, 1965
BssECI	CCNNGG	1 cut(s)	1368
BssNI	GRCGYC	2 cut(s)	1138, 1402
Bst2UI	CCWGG	4 cut(s)	1370, 1776, 2184, 2619
Bst4CI	ACNGT	4 cut(s)	535, 1273, 1701, 2209
Bst6I	CTCTTC	7 cut(s)	254, 435, 996, 1758, 1821, 2005, 2055
BstACI	GRCGYC	2 cut(s)	1138, 1402
BstF5I	GGATG	4 cut(s)	523, 655, 1838, 1932
BstH2I	RGCGCY	2 cut(s)	1141, 1405
BstHHI	GCGC	3 cut(s)	451, 1140, 1404
BstMAI	GTCTC	5 cut(s)	632, 635, 1946, 2502, 2652
BstMCI	CGRYCG	1 cut(s)	1700
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 740, 1030, 1239, 2014
BstNI	CCWGG	4 cut(s)	1370, 1776, 2184, 2619
BstNSI	RCATGY	4 cut(s)	1242, 1947, 2177, 2221
BstSCI	CCNGG	5 cut(s)	1140, 1368, 1774, 2182, 2617
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	2 cut(s)	278, 1369
BstV1I	GCAGC	9 cut(s)	438, 993, 1020, 1120, 2026, 2377, 2386, 2505, 2650
BstV2I	GAAGAC	3 cut(s)	472, 1386, 2235
BstX2I	RGATCY	5 cut(s)	82, 232, 1771, 2119, 2305
BstYI	RGATCY	5 cut(s)	82, 232, 1771, 2119, 2305
Bsu15I	ATCGAT	2 cut(s)	198, 1743
BsuRI	GGCC	5 cut(s)	204, 213, 276, 530, 561
BsuTUI	ATCGAT	2 cut(s)	198, 1743
BtrI	CACGTC	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	523, 655, 1838, 1932
BtsIMutI	CAGTG	1 cut(s)	869
BveI	ACCTGC	3 cut(s)	1371, 1663, 2446
CaiI	CAGNNNCTG	2 cut(s)	796, 2624
CfoI	GCGC	3 cut(s)	451, 1140, 1404
Cfr13I	GGNCC	6 cut(s)	203, 274, 275, 1333, 1674, 1720
ClaI	ATCGAT	2 cut(s)	198, 1743
CseI	GACGC	2 cut(s)	980, 1052
Csp6I	GTAC	5 cut(s)	352, 574, 699, 1880, 2130
CviQI	GTAC	5 cut(s)	352, 574, 699, 1880, 2130
DinI	GGCGCC	2 cut(s)	1139, 1403
DraI	TTTAAA	1 cut(s)	2250
EaeI	YGGCCR	3 cut(s)	211, 528, 559
Eam1104I	CTCTTC	7 cut(s)	254, 435, 996, 1758, 1821, 2005, 2055
EarI	CTCTTC	7 cut(s)	254, 435, 996, 1758, 1821, 2005, 2055
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	1946
Eco32I	GATATC	4 cut(s)	1375, 1741, 1939, 2430
Eco47I	GGWCC	3 cut(s)	1333, 1674, 1720
Eco57I	CTGAAG	1 cut(s)	2036
EcoO109I	RGGNCCY	2 cut(s)	274, 1720
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	4 cut(s)	1368, 1774, 2182, 2617
EcoRV	GATATC	4 cut(s)	1375, 1741, 1939, 2430
EcoT22I	ATGCAT	2 cut(s)	2091, 2175
EcoT38I	GRGCYC	1 cut(s)	278
EgeI	GGCGCC	2 cut(s)	1139, 1403
EheI	GGCGCC	2 cut(s)	1139, 1403
FalI	AAGNNNNNCTT	2 cut(s)	1158, 1190
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	4 cut(s)	530, 662, 1845, 1939
FriOI	GRGCYC	1 cut(s)	278
FspBI	CTAG	3 cut(s)	236, 1037, 1511
GlaI	GCGC	3 cut(s)	450, 1139, 1403
GsaI	CCCAGC	3 cut(s)	1233, 2390, 2517
HaeII	RGCGCY	2 cut(s)	1141, 1405
HaeIII	GGCC	5 cut(s)	204, 213, 276, 530, 561
HapII	CCGG	3 cut(s)	767, 1141, 2297
HgaI	GACGC	2 cut(s)	980, 1052
HhaI	GCGC	3 cut(s)	451, 1140, 1404
Hin1I	GRCGYC	2 cut(s)	1138, 1402
Hin6I	GCGC	3 cut(s)	449, 1138, 1402
HinP1I	GCGC	3 cut(s)	449, 1138, 1402
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	4 cut(s)	464, 825, 1191, 2367
HinfI	GANTC	9 cut(s)	25, 614, 620, 844, 1043, 1079, 1979, 2189, 2401
HpaII	CCGG	3 cut(s)	767, 1141, 2297
HphI	GGTGA	7 cut(s)	116, 1532, 1697, 1790, 1953, 2198, 2589
Hpy166II	GTNNAC	4 cut(s)	241, 472, 1921, 2242
Hpy8I	GTNNAC	4 cut(s)	241, 472, 1921, 2242
Hpy99I	CGWCG	2 cut(s)	1068, 1458
HpyAV	CCTTC	7 cut(s)	796, 1012, 1141, 1711, 1805, 2089, 2627
HpyCH4III	ACNGT	4 cut(s)	535, 1273, 1701, 2209
HpyCH4IV	ACGT	5 cut(s)	179, 524, 985, 1453, 2044
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 740, 1030, 1239, 2014
HpySE526I	ACGT	5 cut(s)	179, 524, 985, 1453, 2044
Hsp92I	GRCGYC	2 cut(s)	1138, 1402
HspAI	GCGC	3 cut(s)	449, 1138, 1402
KasI	GGCGCC	2 cut(s)	1137, 1401
Ksp22I	TGATCA	1 cut(s)	775
LguI	GCTCTTC	2 cut(s)	996, 2055
LmnI	GCTCC	4 cut(s)	793, 940, 1021, 2345
Lsp1109I	GCAGC	9 cut(s)	438, 993, 1020, 1120, 2026, 2377, 2386, 2505, 2650
LweI	GCATC	8 cut(s)	496, 583, 651, 815, 1108, 2076, 2108, 2586
MaeI	CTAG	3 cut(s)	236, 1037, 1511
MaeII	ACGT	5 cut(s)	179, 524, 985, 1453, 2044
MaeIII	GTNAC	7 cut(s)	404, 520, 1318, 1629, 1703, 2186, 2361
MbiI	CCGCTC	1 cut(s)	107
MflI	RGATCY	5 cut(s)	82, 232, 1771, 2119, 2305
MhlI	GDGCHC	5 cut(s)	278, 552, 1369, 2050, 2342
MlsI	TGGCCA	3 cut(s)	213, 530, 561
MluNI	TGGCCA	3 cut(s)	213, 530, 561
Mly113I	GGCGCC	2 cut(s)	1138, 1402
MlyI	GAGTC	4 cut(s)	34, 1052, 2183, 2395
MmeI	TCCRAC	3 cut(s)	60, 585, 1436
Mox20I	TGGCCA	3 cut(s)	213, 530, 561
Mph1103I	ATGCAT	2 cut(s)	2091, 2175
MroXI	GAANNNNTTC	1 cut(s)	1512
MscI	TGGCCA	3 cut(s)	213, 530, 561
MseI	TTAA	7 cut(s)	854, 1215, 1479, 2069, 2249, 2268, 2408
MslI	CAYNNNNRTG	1 cut(s)	1521
Msp20I	TGGCCA	3 cut(s)	213, 530, 561
MspA1I	CMGCKG	1 cut(s)	2390
MspI	CCGG	3 cut(s)	767, 1141, 2297
MspR9I	CCNGG	5 cut(s)	1142, 1370, 1776, 2184, 2619
MvaI	CCWGG	4 cut(s)	1370, 1776, 2184, 2619
MwoI	GCNNNNNNNGC	5 cut(s)	210, 740, 1030, 1239, 2014
NarI	GGCGCC	2 cut(s)	1138, 1402
NciI	CCSGG	1 cut(s)	1142
NlaIV	GGNNCC	6 cut(s)	84, 276, 1139, 1403, 1722, 1773
NmuCI	GTSAC	3 cut(s)	520, 1703, 2186
NsiI	ATGCAT	2 cut(s)	2091, 2175
NspI	RCATGY	4 cut(s)	1242, 1947, 2177, 2221
PaeI	GCATGC	2 cut(s)	1242, 2221
PciI	ACATGT	1 cut(s)	1943
PciSI	GCTCTTC	2 cut(s)	996, 2055
PdmI	GAANNNNTTC	1 cut(s)	1512
PfeI	GAWTC	5 cut(s)	614, 620, 844, 1079, 1979
PflFI	GACNNNGTC	2 cut(s)	476, 1701
PflMI	CCANNNNNTGG	1 cut(s)	2567
PleI	GAGTC	4 cut(s)	33, 1051, 2183, 2395
PluTI	GGCGCC	2 cut(s)	1141, 1405
PpsI	GAGTC	4 cut(s)	33, 1051, 2183, 2395
PpuMI	RGGWCCY	1 cut(s)	1720
PscI	ACATGT	1 cut(s)	1943
PshBI	ATTAAT	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	1720
Psp6I	CCWGG	4 cut(s)	1368, 1774, 2182, 2617
PspFI	CCCAGC	3 cut(s)	1229, 2386, 2513
PspGI	CCWGG	4 cut(s)	1368, 1774, 2182, 2617
PspN4I	GGNNCC	6 cut(s)	84, 276, 1139, 1403, 1722, 1773
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	6 cut(s)	203, 274, 275, 1333, 1674, 1720
PspPPI	RGGWCCY	1 cut(s)	1720
PstNI	CAGNNNCTG	2 cut(s)	796, 2624
PsuI	RGATCY	5 cut(s)	82, 232, 1771, 2119, 2305
PsyI	GACNNNGTC	2 cut(s)	476, 1701
PvuII	CAGCTG	1 cut(s)	2390
RsaI	GTAC	5 cut(s)	353, 575, 700, 1881, 2131
RsaNI	GTAC	5 cut(s)	352, 574, 699, 1880, 2130
RseI	CAYNNNNRTG	1 cut(s)	1521
SapI	GCTCTTC	2 cut(s)	996, 2055
SaqAI	TTAA	7 cut(s)	854, 1215, 1479, 2069, 2249, 2268, 2408
Sau96I	GGNCC	6 cut(s)	203, 274, 275, 1333, 1674, 1720
SchI	GAGTC	4 cut(s)	34, 1052, 2183, 2395
ScrFI	CCNGG	5 cut(s)	1142, 1370, 1776, 2184, 2619
SduI	GDGCHC	5 cut(s)	278, 552, 1369, 2050, 2342
SfaNI	GCATC	8 cut(s)	496, 583, 651, 815, 1108, 2076, 2108, 2586
SfcI	CTRYAG	1 cut(s)	355
SfiI	GGCCNNNNNGGCC	1 cut(s)	210
SfoI	GGCGCC	2 cut(s)	1139, 1403
SinI	GGWCC	3 cut(s)	1333, 1674, 1720
SmiMI	CAYNNNNRTG	1 cut(s)	1521
SmlI	CTYRAG	3 cut(s)	44, 491, 1487
SmoI	CTYRAG	3 cut(s)	44, 491, 1487
SpeI	ACTAGT	1 cut(s)	1510
SphI	GCATGC	2 cut(s)	1242, 2221
SsiI	CCGC	5 cut(s)	105, 128, 256, 1030, 1378
SspDI	GGCGCC	2 cut(s)	1137, 1401
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	3 cut(s)	236, 1037, 1511
StyD4I	CCNGG	5 cut(s)	1140, 1368, 1774, 2182, 2617
TaaI	ACNGT	4 cut(s)	535, 1273, 1701, 2209
TaiI	ACGT	5 cut(s)	182, 527, 988, 1456, 2047
TaqI	TCGA	4 cut(s)	198, 706, 1696, 1743
TaqII	GACCGA	1 cut(s)	409
TauI	GCSGC	2 cut(s)	107, 1033
TfiI	GAWTC	5 cut(s)	614, 620, 844, 1079, 1979
Tru1I	TTAA	7 cut(s)	854, 1215, 1479, 2069, 2249, 2268, 2408
Tru9I	TTAA	7 cut(s)	854, 1215, 1479, 2069, 2249, 2268, 2408
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	3 cut(s)	520, 1703, 2186
TseI	GCWGC	9 cut(s)	451, 1006, 1033, 1108, 2014, 2374, 2390, 2518, 2638
Tsp45I	GTSAC	3 cut(s)	520, 1703, 2186
TspGWI	ACGGA	3 cut(s)	513, 661, 1114
TspRI	CASTG	1 cut(s)	876
Tth111I	GACNNNGTC	2 cut(s)	476, 1701
Van91I	CCANNNNNTGG	1 cut(s)	2567
VpaK11BI	GGWCC	3 cut(s)	1333, 1674, 1720
VspI	ATTAAT	1 cut(s)	854
XapI	RAATTY	9 cut(s)	155, 1303, 1358, 1587, 1607, 1994, 2032, 2080, 2469
XceI	RCATGY	4 cut(s)	1242, 1947, 2177, 2221
XmnI	GAANNNNTTC	1 cut(s)	1512
XspI	CTAG	3 cut(s)	236, 1037, 1511
Zsp2I	ATGCAT	2 cut(s)	2091, 2175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.