Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7974142.1

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

107 .. 460

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7974142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcaagacattttcggatcagttcgccgatcactcgtcttccgacctccgccgccggacaccgacgactccccggtaaccctagtcgacaagatcacctcctctattcgaaaatccagagtcttctccaaaccctcgcctccgccgccgcccaaggacgccgcgccgcctccgatccgatggcgaaaaggagagttgatcggctgcggcgcctttggccgcgtctacatgggcatgaatctcggctccggcgagcttctcgctgtgaaacaggtatggtttcgaattcggtttcttctgcttgagggattcgaattgattttgcttgattttggtgatggagcgtggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

9.64

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	87, 225
AccII	CGCG	2 cut(s)	164, 222
AciI	CCGC	9 cut(s)	50, 53, 143, 146, 149, 162, 167, 207, 220
AclWI	GGATC	2 cut(s)	25, 169
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	285
AcyI	GRCGYC	2 cut(s)	159, 210
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	2 cut(s)	25, 169
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	2 cut(s)	166, 212
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	88, 347
AsuII	TTCGAA	3 cut(s)	109, 283, 312
BanI	GGYRCC	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	31, 115
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	174, 332
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BcnI	CCSGG	1 cut(s)	74
BfaI	CTAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	8 cut(s)	53, 146, 149, 162, 167, 205, 208, 220
BlsI	GCNGC	8 cut(s)	54, 147, 150, 163, 168, 206, 209, 221
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	211, 247
BmrFI	CCNGG	1 cut(s)	74
BpiI	GAAGAC	2 cut(s)	31, 115
Bpu14I	TTCGAA	3 cut(s)	109, 283, 312
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	159, 210
BsaJI	CCNNGG	2 cut(s)	72, 153
BseDI	CCNNGG	2 cut(s)	72, 153
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	164, 222
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	56, 74, 249
BsnI	GGCC	1 cut(s)	219
Bsp119I	TTCGAA	3 cut(s)	109, 283, 312
Bsp143I	GATC	5 cut(s)	17, 29, 93, 174, 198
BspACI	CCGC	9 cut(s)	50, 53, 143, 146, 149, 162, 167, 207, 220
BspANI	GGCC	1 cut(s)	219
BspFNI	CGCG	2 cut(s)	164, 222
BspLI	GGNNCC	2 cut(s)	211, 247
BspPI	GGATC	2 cut(s)	25, 169
BspT104I	TTCGAA	3 cut(s)	109, 283, 312
BspT107I	GGYRCC	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	72, 153
BssMI	GATC	5 cut(s)	17, 29, 93, 174, 198
BssNI	GRCGYC	2 cut(s)	159, 210
BssT1I	CCWWGG	1 cut(s)	153
BstACI	GRCGYC	2 cut(s)	159, 210
BstBI	TTCGAA	3 cut(s)	109, 283, 312
BstC8I	GCNNGC	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	76
BstFNI	CGCG	2 cut(s)	164, 222
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	166, 212
BstKTI	GATC	5 cut(s)	20, 32, 96, 177, 201
BstMBI	GATC	5 cut(s)	17, 29, 93, 174, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 216
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	2 cut(s)	164, 222
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	2 cut(s)	31, 115
BsuRI	GGCC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	2 cut(s)	166, 212
CseI	GACGC	2 cut(s)	167, 211
CviAII	CATG	2 cut(s)	229, 235
CviJI	RGCY	4 cut(s)	204, 219, 246, 256
CviKI_1	RGCY	4 cut(s)	204, 219, 246, 256
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	5 cut(s)	19, 31, 95, 176, 200
DpnII	GATC	5 cut(s)	17, 29, 93, 174, 198
EaeI	YGGCCR	1 cut(s)	217
EciI	GGCGGA	2 cut(s)	39, 132
Eco130I	CCWWGG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	232, 238
FaiI	YATR	3 cut(s)	230, 236, 277
FatI	CATG	2 cut(s)	228, 234
FblI	GTMKAC	2 cut(s)	87, 225
Fnu4HI	GCNGC	8 cut(s)	53, 146, 149, 162, 167, 205, 208, 220
Fsp4HI	GCNGC	8 cut(s)	53, 146, 149, 162, 167, 205, 208, 220
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	2 cut(s)	165, 211
GluI	GCNGC	8 cut(s)	53, 146, 149, 162, 167, 205, 208, 220
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	56, 74, 249
HgaI	GACGC	2 cut(s)	167, 211
HhaI	GCGC	2 cut(s)	166, 212
Hin1I	GRCGYC	2 cut(s)	159, 210
Hin1II	CATG	2 cut(s)	232, 238
Hin6I	GCGC	2 cut(s)	164, 210
HinP1I	GCGC	2 cut(s)	164, 210
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	68, 120, 238, 309
HpaII	CCGG	3 cut(s)	56, 74, 249
HphI	GGTGA	2 cut(s)	88, 347
Hpy166II	GTNNAC	2 cut(s)	88, 226
Hpy188I	TCNGA	4 cut(s)	17, 44, 174, 179
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	2 cut(s)	88, 226
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 216
Hsp92I	GRCGYC	2 cut(s)	159, 210
Hsp92II	CATG	2 cut(s)	232, 238
HspAI	GCGC	2 cut(s)	164, 210
KasI	GGCGCC	1 cut(s)	209
Kzo9I	GATC	5 cut(s)	17, 29, 93, 174, 198
LmnI	GCTCC	2 cut(s)	251, 341
LpnPI	CCDG	5 cut(s)	69, 87, 130, 257, 262
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	5 cut(s)	19, 31, 95, 176, 200
MboI	GATC	5 cut(s)	17, 29, 93, 174, 198
MboII	GAAGA	3 cut(s)	31, 115, 287
MluCI	AATT	2 cut(s)	285, 314
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	62, 129
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	57, 109, 112, 145, 150, 180, 298
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	3 cut(s)	56, 74, 249
MspR9I	CCNGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	164, 222
MwoI	GCNNNNNNNGC	2 cut(s)	145, 216
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	5 cut(s)	17, 29, 93, 174, 198
NlaIII	CATG	2 cut(s)	232, 238
NlaIV	GGNNCC	2 cut(s)	211, 247
NmeAIII	GCCGAG	1 cut(s)	222
NspV	TTCGAA	3 cut(s)	109, 283, 312
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	238, 309
PkrI	GCNGC	8 cut(s)	54, 147, 150, 163, 168, 206, 209, 221
PleI	GAGTC	2 cut(s)	62, 128
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	2 cut(s)	62, 128
PspEI	GGTNACC	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	211, 247
RseI	CAYNNNNRTG	1 cut(s)	233
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	8 cut(s)	53, 146, 149, 162, 167, 205, 208, 220
Sau3AI	GATC	5 cut(s)	17, 29, 93, 174, 198
SchI	GAGTC	2 cut(s)	62, 129
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	4 cut(s)	49, 101, 258, 276
SfoI	GGCGCC	1 cut(s)	211
SfuI	TTCGAA	3 cut(s)	109, 283, 312
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	285, 314
SsiI	CCGC	9 cut(s)	50, 53, 143, 146, 149, 162, 167, 207, 220
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	4 cut(s)	87, 109, 283, 312
TasI	AATT	2 cut(s)	285, 314
TauI	GCSGC	7 cut(s)	55, 148, 151, 164, 169, 210, 222
TfiI	GAWTC	2 cut(s)	238, 309
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	251
XapI	RAATTY	1 cut(s)	285
XmiI	GTMKAC	2 cut(s)	87, 225
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.