Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

19273008 .. 19273317

Gene Structure 310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGACATGATTTGAGCGTATTTAGCTATGCATCTGTAATGGCTGCCACAATCAACTTCGCTGATGAAAACAAGCTTGGAGAAGGGGGCTTTGGACCTGTTTATAAGGGGAAATTGGCAACGGGACTAGAAATAGCTGTGAAGAGGCTTTCAAAATGTTCAGGGCAAGGAACACTAGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

61

Amino Acids

6.41

Weight (kDa)

6.53

Isoelectric Point (pI)

18.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	4 cut(s)	60, 75, 92, 107
AluBI	AGCT	3 cut(s)	27, 76, 137
AluI	AGCT	3 cut(s)	27, 76, 137
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	128, 176
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	18, 138
BsmFI	GGGAC	2 cut(s)	18, 138
Bst6I	CTCTTC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	6 cut(s)	27, 44, 76, 90, 137, 148
CviKI_1	RGCY	6 cut(s)	27, 44, 76, 90, 137, 148
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	34
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 30, 105
FaqI	GGGAC	2 cut(s)	18, 138
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	128, 176
GluI	GCNGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	11
LpnPI	CCDG	2 cut(s)	111, 147
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	128, 176
MboII	GAAGA	1 cut(s)	154
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	184
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	95
SetI	ASST	4 cut(s)	29, 78, 100, 139
SfaNI	GCATC	1 cut(s)	41
SgeI	CNNG	8 cut(s)	20, 85, 89, 110, 135, 140, 174, 179
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	128, 176
TasI	AATT	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	184
Tru9I	TTAA	1 cut(s)	184
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	95
XspI	CTAG	2 cut(s)	128, 176
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.