Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Forward (+)

4273786 .. 4274413

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGCATCCATTTGTGACTGGGCAACCTGTGGAATATCATCCTGTTTTGTGTCCTTCTATCATGGAAGATTCTGAGATCCCTGCTCCATCATATTCATCAAACCTACAGACCTTTGAGATGTCAACATGCCGAGATTCATCTGATATGTGTAATATGGGTAGTTTGCACTGCTCAACCATAAATCCTGACAAGGTGTTGGAAAGTACACACATTTGGGGAAGAGACAGTGATGATGACATGTGTCAGATTGATGACAAACATGATGTTATGGTCGGTGAAGTAAACCTCGATTCTTCTTATATGCCCGACGACCTTAAGAGGCTTAGAGCTTTAACCCGATGTGCGAGCCCACTGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

4.65

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	73
AfaI	GTAC	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	240
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	353
BccI	CCATC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	107
BfrI	CTTAAG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	30
BoxI	GACNNNNGTC	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	7, 40
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	75, 326
BstF5I	GGATG	2 cut(s)	7, 40
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	132, 244
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	7, 40
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	169, 235, 353
Cac8I	GCNNGC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	4 cut(s)	64, 129, 241, 263
CviJI	RGCY	3 cut(s)	325, 332, 351
CviKI_1	RGCY	3 cut(s)	325, 332, 351
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	75, 326
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	4 cut(s)	67, 132, 244, 266
FatI	CATG	4 cut(s)	63, 128, 240, 262
FokI	GGATG	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	67, 132, 244, 266
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	71, 137, 293
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	126, 209, 286
Hpy188I	TCNGA	3 cut(s)	76, 145, 249
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	3 cut(s)	126, 209, 286
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	75, 326
Hsp92II	CATG	4 cut(s)	67, 132, 244, 266
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	6, 42, 57, 96, 201
LweI	GCATC	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	80, 234, 288
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	299, 315
MseI	TTAA	2 cut(s)	318, 335
MspCI	CTTAAG	1 cut(s)	317
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	4 cut(s)	67, 132, 244, 266
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	2 cut(s)	132, 244
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	71, 137, 293
PscI	ACATGT	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	318, 335
Sau3AI	GATC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	7 cut(s)	31, 108, 116, 198, 291, 318, 334
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	291
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	71, 137, 293
Tru1I	TTAA	2 cut(s)	318, 335
Tru9I	TTAA	2 cut(s)	318, 335
TscAI	CASTG	3 cut(s)	176, 235, 360
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	17, 87, 129
TspRI	CASTG	3 cut(s)	176, 235, 360
Vha464I	CTTAAG	1 cut(s)	317
XceI	RCATGY	2 cut(s)	132, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.