Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Forward (+)

32114072 .. 32115087

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGCCCCACCCGCCGCTTCATCCCCGGCCAAGGTTCGGGAGCTTCCGGGCTCGTCACATCGTGTTCCCGCCACCGGACATCGACGACTCCCCGGTAACCTTAGTCGACAAGATCACCACCTCCCTTCGGAAATCCCGAGTCTTCTCCAAACCCTCCCCGCTGTTGTCGCCGCCTCCGTCCTCTTTCGTCCCCAAAGAGACCGCGCCTCTGGTCCGATGGCACAAGGGCGAGTTGATCGGCTGCGGCGCCTTCGGCCGCGTCTACATGGGCATGAATCTCAGCTCCGGCGAGCTTCTGGCCGTTAAGCAGGGGTCAGTAACTGGTCATTGGGTGTCAGTAACTGTAACTGGTTTCTGGGGAAATTCCGGTAACCAGAGTCCGGAGATCGGGGAAATTCTGGTGACCGGAGTCTGGCGGCCGGTGACCGGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

146

Amino Acids

15.73

Weight (kDa)

10.11

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	2 cut(s)	108, 264
AccII	CGCG	2 cut(s)	206, 261
AccIII	TCCGGA	1 cut(s)	382
AcoI	YGGCCR	4 cut(s)	29, 256, 300, 419
AcsI	RAATTY	2 cut(s)	364, 396
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	64
AfiI	CCNNNNNNNGG	8 cut(s)	33, 38, 76, 129, 382, 389, 414, 428
AluBI	AGCT	3 cut(s)	45, 285, 295
AluI	AGCT	3 cut(s)	45, 285, 295
Alw26I	GTCTC	1 cut(s)	194
AlwNI	CAGNNNCTG	2 cut(s)	323, 344
Ama87I	CYCGRG	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	4 cut(s)	29, 256, 300, 419
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	2 cut(s)	364, 396
AspLEI	GCGC	2 cut(s)	208, 251
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	3 cut(s)	28, 50, 95
AsuHPI	GGTGA	3 cut(s)	109, 415, 436
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	287
BcnI	CCSGG	3 cut(s)	28, 50, 95
BcoDI	GTCTC	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	7 cut(s)	5, 17, 173, 244, 247, 259, 419
BlsI	GCNGC	7 cut(s)	6, 18, 174, 245, 248, 260, 420
Bme1390I	CCNGG	3 cut(s)	28, 50, 95
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	3 cut(s)	28, 50, 95
BoxI	GACNNNNGTC	2 cut(s)	410, 431
BpiI	GAAGAC	1 cut(s)	136
BpuMI	CCSGG	3 cut(s)	28, 50, 95
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	26, 32, 93
BsaWI	WCCGGW	5 cut(s)	76, 368, 382, 407, 428
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 38, 76, 129, 382, 389, 414, 428
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	328, 355
BseAI	TCCGGA	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	26, 32, 93
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	8 cut(s)	33, 38, 76, 129, 382, 389, 414, 428
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	2 cut(s)	328, 355
BseX3I	CGGCCG	2 cut(s)	256, 419
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	206, 261
Bsh1285I	CGRYCG	2 cut(s)	259, 422
BshFI	GGCC	4 cut(s)	31, 258, 302, 421
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	259, 422
BsiHKCI	CYCGRG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	8 cut(s)	33, 38, 76, 129, 382, 389, 414, 428
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	31, 258, 302, 421
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	114, 237, 387
BspANI	GGCC	4 cut(s)	31, 258, 302, 421
BspCNI	CTCAG	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	206, 261
BspLI	GGNNCC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	328, 355
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	26, 32, 93
BssMI	GATC	3 cut(s)	114, 237, 387
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	103, 281
BstEII	GGTNACC	4 cut(s)	97, 371, 403, 424
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	206, 261
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	2 cut(s)	208, 251
BstKTI	GATC	3 cut(s)	117, 240, 390
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	114, 237, 387
BstMCI	CGRYCG	2 cut(s)	259, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 169, 255
BstPAI	GACNNNNGTC	2 cut(s)	410, 431
BstPI	GGTNACC	4 cut(s)	97, 371, 403, 424
BstSCI	CCNGG	3 cut(s)	26, 48, 93
BstUI	CGCG	2 cut(s)	206, 261
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	136
BstZI	CGGCCG	2 cut(s)	256, 419
BsuRI	GGCC	4 cut(s)	31, 258, 302, 421
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	293
CaiI	CAGNNNCTG	2 cut(s)	323, 344
CfoI	GCGC	2 cut(s)	208, 251
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	250
CviAII	CATG	2 cut(s)	268, 274
CviJI	RGCY	9 cut(s)	31, 45, 53, 243, 258, 285, 295, 302, 421
CviKI_1	RGCY	9 cut(s)	31, 45, 53, 243, 258, 285, 295, 302, 421
DdeI	CTNAG	2 cut(s)	103, 281
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	3 cut(s)	116, 239, 389
DpnII	GATC	3 cut(s)	114, 237, 387
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	4 cut(s)	29, 256, 300, 419
EagI	CGGCCG	2 cut(s)	256, 419
EclXI	CGGCCG	2 cut(s)	256, 419
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	214
Eco52I	CGGCCG	2 cut(s)	256, 419
Eco88I	CYCGRG	1 cut(s)	138
Eco91I	GGTNACC	4 cut(s)	97, 371, 403, 424
EcoO65I	GGTNACC	4 cut(s)	97, 371, 403, 424
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	271, 277
FaiI	YATR	2 cut(s)	269, 275
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	267, 273
FauI	CCCGC	3 cut(s)	21, 78, 168
FblI	GTMKAC	2 cut(s)	108, 264
Fnu4HI	GCNGC	7 cut(s)	5, 17, 173, 244, 247, 259, 419
FokI	GGATG	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	7 cut(s)	5, 17, 173, 244, 247, 259, 419
GlaI	GCGC	2 cut(s)	207, 250
GluI	GCNGC	7 cut(s)	5, 17, 173, 244, 247, 259, 419
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	4 cut(s)	31, 258, 302, 421
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	2 cut(s)	208, 251
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	271, 277
Hin6I	GCGC	2 cut(s)	206, 249
HinP1I	GCGC	2 cut(s)	206, 249
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	6 cut(s)	89, 141, 277, 379, 411, 432
HphI	GGTGA	3 cut(s)	109, 415, 436
Hpy166II	GTNNAC	2 cut(s)	109, 265
Hpy188I	TCNGA	3 cut(s)	132, 218, 437
Hpy188III	TCNNGA	3 cut(s)	40, 138, 383
Hpy8I	GTNNAC	2 cut(s)	109, 265
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	137, 262
HpyCH4III	ACNGT	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 169, 255
HpyF3I	CTNAG	2 cut(s)	103, 281
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	271, 277
HspAI	GCGC	2 cut(s)	206, 249
KasI	GGCGCC	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	114, 237, 387
LmnI	GCTCC	2 cut(s)	42, 290
Lsp1109I	GCAGC	1 cut(s)	230
MaeIII	GTNAC	8 cut(s)	56, 97, 319, 340, 346, 371, 403, 424
MalI	GATC	3 cut(s)	116, 239, 389
MboI	GATC	3 cut(s)	114, 237, 387
MboII	GAAGA	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	2 cut(s)	364, 396
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	4 cut(s)	83, 150, 388, 420
MnlI	CCTC	5 cut(s)	133, 166, 186, 193, 219
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	163
MspR9I	CCNGG	3 cut(s)	28, 50, 95
MvnI	CGCG	2 cut(s)	206, 261
MwoI	GCNNNNNNNGC	3 cut(s)	13, 169, 255
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	3 cut(s)	28, 50, 95
NdeII	GATC	3 cut(s)	114, 237, 387
NlaIII	CATG	2 cut(s)	271, 277
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	3 cut(s)	56, 403, 424
PcsI	WCGNNNNNNNCGW	2 cut(s)	136, 176
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	7 cut(s)	6, 18, 174, 245, 248, 260, 420
PleI	GAGTC	4 cut(s)	83, 149, 387, 419
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	4 cut(s)	83, 149, 387, 419
PshAI	GACNNNNGTC	2 cut(s)	410, 431
PspEI	GGTNACC	4 cut(s)	97, 371, 403, 424
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	2 cut(s)	323, 344
RseI	CAYNNNNRTG	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	7 cut(s)	5, 17, 173, 244, 247, 259, 419
Sau3AI	GATC	3 cut(s)	114, 237, 387
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	4 cut(s)	83, 150, 388, 420
ScrFI	CCNGG	3 cut(s)	28, 50, 95
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	6 cut(s)	38, 47, 104, 125, 287, 297
SfoI	GGCGCC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	364, 396
SspDI	GGCGCC	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	26, 48, 93
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	84, 108
TasI	AATT	2 cut(s)	364, 396
TauI	GCSGC	6 cut(s)	7, 19, 175, 249, 261, 421
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	3 cut(s)	56, 403, 424
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	3 cut(s)	56, 403, 424
TspDTI	ATGAA	2 cut(s)	11, 290
TspGWI	ACGGA	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	364, 396
XmiI	GTMKAC	2 cut(s)	108, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.