Rh5DG173300

MAP kinase kinase kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000922
Physical Location & Seq
Reverse (-)
18601188 .. 18602703
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG173300.1

Sequence Viewer

Length: 285 bp
ATGTCTTCAATCCCCAGAGACGAAGCAGCCTCGATTCAATGGCAGAAGGGCGATTTGATCGGTTCCGGGGCCTTTGGCCGTGTTTACATGGGCATGAATACCGAATCCGGAGAGCTTATTGCTGCAAAAGAGGCAGCAAATATCCTTGTTGATAATAAAGGGCGCATTAAACTAGCAGATTTTGGTGCATCCAAACAGGCAGCCGTTTCAGGTGCAAAGCCTACAAGGGGTACACCATACTGGATGGCTCCTGAAGTCATTTGTGGGACTGGTCATGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04016 ko04722 ko04912 ko05166 map04010 map04016 map04722 map04912 map05166
Pfam Domains
Protein Families
Pkinase

Protein Analysis

94

Amino Acids

9.88

Weight (kDa)

6.55

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 46 - 91 1.1e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 9, 38
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 2 cut(s) 69, 76
ApeKI GCWGC 4 cut(s) 26, 122, 134, 200
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 67
BbvI GCAGC 4 cut(s) 38, 109, 146, 212
BccI CCATC 1 cut(s) 238
BceAI ACGGC 2 cut(s) 63, 188
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 173
BisI GCNGC 4 cut(s) 27, 123, 135, 201
BlsI GCNGC 4 cut(s) 28, 124, 136, 202
Bme1390I CCNGG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 64, 70, 249
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 245, 274
BseAI TCCGGA 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 188, 249
BseLI CCNNNNNNNGG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 245, 274
BseXI GCAGC 4 cut(s) 38, 109, 146, 212
BshFI GGCC 2 cut(s) 71, 78
BsiSI CCGG 2 cut(s) 66, 108
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 2 cut(s) 71, 78
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 57
BspANI GGCC 2 cut(s) 71, 78
BspEI TCCGGA 1 cut(s) 107
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 64, 70, 249
BsrI ACTGG 2 cut(s) 245, 274
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 57
BstF5I GGATG 2 cut(s) 188, 249
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 4 cut(s) 38, 109, 146, 212
BsuRI GGCC 2 cut(s) 71, 78
BtsCI GGATG 2 cut(s) 188, 249
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 231
CviAII CATG 3 cut(s) 88, 94, 275
CviJI RGCY 7 cut(s) 29, 71, 78, 115, 203, 220, 248
CviKI_1 RGCY 7 cut(s) 29, 71, 78, 115, 203, 220, 248
CviQI GTAC 1 cut(s) 231
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 91, 97, 278
FaiI YATR 4 cut(s) 89, 95, 238, 276
FaqI GGGAC 1 cut(s) 280
FatI CATG 3 cut(s) 87, 93, 274
Fnu4HI GCNGC 4 cut(s) 27, 123, 135, 201
FokI GGATG 2 cut(s) 175, 256
Fsp4HI GCNGC 4 cut(s) 27, 123, 135, 201
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 164
GluI GCNGC 4 cut(s) 27, 123, 135, 201
HaeIII GGCC 2 cut(s) 71, 78
HapII CCGG 2 cut(s) 66, 108
HhaI GCGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 91, 97, 278
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 34, 104
HpaII CCGG 2 cut(s) 66, 108
Hpy166II GTNNAC 2 cut(s) 85, 233
Hpy188III TCNNGA 3 cut(s) 108, 251, 275
Hpy8I GTNNAC 2 cut(s) 85, 233
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 125, 188, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Hsp92II CATG 3 cut(s) 91, 97, 278
HspAI GCGC 1 cut(s) 163
Kpn2I TCCGGA 1 cut(s) 107
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 28, 79, 121, 182, 195, 226, 255, 264
Lsp1109I GCAGC 4 cut(s) 38, 109, 146, 212
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 173
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MnlI CCTC 2 cut(s) 40, 124
MroI TCCGGA 1 cut(s) 107
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 2 cut(s) 66, 108
MspR9I CCNGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 67
NdeII GATC 1 cut(s) 57
NlaIII CATG 3 cut(s) 91, 97, 278
NlaIV GGNNCC 3 cut(s) 64, 70, 249
PagI TCATGA 1 cut(s) 274
PfeI GAWTC 2 cut(s) 34, 104
PkrI GCNGC 4 cut(s) 28, 124, 136, 202
PspN4I GGNNCC 3 cut(s) 64, 70, 249
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 4 cut(s) 27, 123, 135, 201
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 67
SetI ASST 2 cut(s) 117, 214
SfaNI GCATC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 92
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 32
TfiI GAWTC 2 cut(s) 34, 104
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 4 cut(s) 26, 122, 134, 200
TspDTI ATGAA 1 cut(s) 110
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.