Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

7010056 .. 7010984

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTCGTCATCGGTTTCGGTTATGTGCAACGATGTCGTTCGGCATCAAGTCAAGTCATGCTGTTACTTCTCATTATAGATGCGTTTGTGATATGCGCTTGTGCATCTTGTTATGTTCGAGAGCTTCCGGGCTCGTCACATCGTGTTCCGGACACCGACGACTCCCCGGTAACCCTAGTCGACAAGATCATCGCCTCCCTTCGAAAATCCCGAGTCTTCTCCAAACCCTCCCTGCCATTGCCGTCGCCTCCGTCCTCCTCCGTCCCCAAAGAGATCGCGCCTCTGATCCGATGGCGCAAGGGCGAGTTGATCGGCTGTGGCGCCTTCGGCCGCATCTACATCGGCATGAATCTCGGCTCCGGCGAGCTTCTGGCCGTTAAGCAGGTCAAGGTTTCCAATTTGAGTTGTTACGATTTCCGGATTGGAGTTGATTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

147

Amino Acids

15.77

Weight (kDa)

9.17

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	2 cut(s)	148, 417
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	2 cut(s)	328, 372
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	124, 367
AluI	AGCT	2 cut(s)	124, 367
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	210
Aor13HI	TCCGGA	2 cut(s)	148, 417
AoxI	GGCC	2 cut(s)	328, 372
AspLEI	GCGC	4 cut(s)	98, 280, 297, 323
AsuC2I	CCSGG	2 cut(s)	129, 167
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	208
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	2 cut(s)	226, 359
BcgI	CGANNNNNNTGC	6 cut(s)	17, 51, 322, 334, 356, 368
BcnI	CCSGG	2 cut(s)	129, 167
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	129, 167
BmeT110I	CYCGRG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	322, 358
BmrFI	CCNGG	2 cut(s)	129, 167
BmsI	GCATC	4 cut(s)	53, 70, 113, 342
BpiI	GAAGAC	1 cut(s)	208
Bpu14I	TTCGAA	1 cut(s)	202
BpuMI	CCSGG	2 cut(s)	129, 167
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	2 cut(s)	148, 417
Bse3DI	GCAATG	1 cut(s)	236
BseAI	TCCGGA	2 cut(s)	148, 417
BseDI	CCNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	330, 374
BshNI	GGYRCC	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	5 cut(s)	128, 149, 167, 360, 418
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	330, 374
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp13I	TCCGGA	2 cut(s)	148, 417
Bsp143I	GATC	4 cut(s)	186, 273, 285, 309
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	330, 374
BspEI	TCCGGA	2 cut(s)	148, 417
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	322, 358
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	186, 273, 285, 309
BssNI	GRCGYC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	365
BstEII	GGTNACC	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	4 cut(s)	98, 280, 297, 323
BstKTI	GATC	4 cut(s)	189, 276, 288, 312
BstMBI	GATC	4 cut(s)	186, 273, 285, 309
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	127, 165
BstUI	CGCG	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	330, 374
BtgZI	GCGATG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	4 cut(s)	98, 280, 297, 323
CviAII	CATG	2 cut(s)	58, 346
CviJI	RGCY	7 cut(s)	124, 132, 315, 330, 357, 367, 374
CviKI_1	RGCY	7 cut(s)	124, 132, 315, 330, 357, 367, 374
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	4 cut(s)	188, 275, 287, 311
DpnII	GATC	4 cut(s)	186, 273, 285, 309
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	328, 372
EagI	CGGCCG	1 cut(s)	328
EclXI	CGGCCG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
FaeI	CATG	2 cut(s)	61, 349
FaiI	YATR	6 cut(s)	24, 59, 77, 94, 114, 347
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	57, 345
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	4 cut(s)	97, 279, 296, 322
GluI	GCNGC	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	330, 374
HapII	CCGG	5 cut(s)	128, 149, 167, 360, 418
HhaI	GCGC	4 cut(s)	98, 280, 297, 323
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	61, 349
Hin6I	GCGC	4 cut(s)	96, 278, 295, 321
HinP1I	GCGC	4 cut(s)	96, 278, 295, 321
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	161, 213, 349, 431
HpaII	CCGG	5 cut(s)	128, 149, 167, 360, 418
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	285, 290
Hpy188III	TCNNGA	4 cut(s)	119, 149, 210, 418
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	161, 247
HpyAV	CCTTC	2 cut(s)	209, 334
HpyCH4V	TGCA	2 cut(s)	28, 104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	61, 349
HspAI	GCGC	4 cut(s)	96, 278, 295, 321
KasI	GGCGCC	1 cut(s)	320
Kpn2I	TCCGGA	2 cut(s)	148, 417
Kzo9I	GATC	4 cut(s)	186, 273, 285, 309
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	8 cut(s)	141, 162, 180, 245, 356, 368, 373, 431
LweI	GCATC	4 cut(s)	53, 70, 113, 342
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	4 cut(s)	63, 135, 169, 407
MalI	GATC	4 cut(s)	188, 275, 287, 311
MboI	GATC	4 cut(s)	186, 273, 285, 309
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	397
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	155, 222
MnlI	CCTC	6 cut(s)	205, 238, 258, 265, 268, 291
MroI	TCCGGA	2 cut(s)	148, 417
MseI	TTAA	2 cut(s)	378, 439
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	5 cut(s)	128, 149, 167, 360, 418
MspR9I	CCNGG	2 cut(s)	129, 167
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	327
NarI	GGCGCC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	129, 167
NdeII	GATC	4 cut(s)	186, 273, 285, 309
NlaIII	CATG	2 cut(s)	61, 349
NlaIV	GGNNCC	2 cut(s)	322, 358
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	208, 360
PfeI	GAWTC	2 cut(s)	349, 431
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	2 cut(s)	155, 221
PluTI	GGCGCC	1 cut(s)	324
PpsI	GAGTC	2 cut(s)	155, 221
PspEI	GGTNACC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	322, 358
RseI	CAYNNNNRTG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	378, 439
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	4 cut(s)	186, 273, 285, 309
SchI	GAGTC	2 cut(s)	155, 222
ScrFI	CCNGG	2 cut(s)	129, 167
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	4 cut(s)	126, 369, 387, 393
SfaNI	GCATC	4 cut(s)	53, 70, 113, 342
SfoI	GGCGCC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	331
SspDI	GGCGCC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	127, 165
TaqI	TCGA	3 cut(s)	118, 180, 202
TasI	AATT	1 cut(s)	397
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	349, 431
Tru1I	TTAA	2 cut(s)	378, 439
Tru9I	TTAA	2 cut(s)	378, 439
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	2 cut(s)	240, 250
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.