pycom04g18180

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
20303551 .. 20306666
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18180.13

Sequence Viewer

Length: 1422 bp
ATGCACAGGGACATTAAGGGAGCAAATATCCTTGTTGATAATAAGGGATGCATCAAACTTGCAGATTTTGGGGCATCCAAACAGGTCGTAGAGCTGGCAACCATTTCTGGGGCTAAGTCTATGAAGGGTACACCATACTGGATGGCTCCTGAAGTTATTCTCCAGACTGGTCATAGCTTCTCGGCTGATATATGGAGTGTTGGATGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAACAGTACCAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACAAAGTCTCATCCACCAATCCCTGAGCATCTTTCCTTTGAGGCAAAAGATTTTTTGCTAAAATGTCTGCAAAAGGAACCACATTTGAGGTCAGTGGCATCTGAGTTGCTTCAGCATCCATTCGTAACTGGGGAACATATGGAATCTCAGGCTGTTTTTCGTACTTCTGTCATGGAAGATTCAGAACTTCGATCTCCATCATATTCTCCCAACCTGCACACCTTTGAGATGTCAACTTGCCCTGATTCAGATAATATGTGTAATTTGGGCAGTTTCCAACACTCAACTATACATCCTAACGAGTTGCTGGAAAGCAGACCCATTTGGGGAAGAAACAGCTGTGATGATGACATGTGTCAGATTGATGACAAAGACGATACTATGGTGGGCGAAGTAAAGCTGGGTTCTTCTTTGATGCTTGGCAACATTAAGAGTTTTAACCCAATGTGCGAACCCACTGATGATGAGTTGGTGTGCAAGTTTGGTGGAAATTTAGAAACAGAACAAAACGGAACAGATCTGGATACCACTCACCAAATTGATTTTCCTGCCGGAAACTCTGGAACAATTGGAGGGGGAGATAAAGGGTTTTCATTTCCTTGCGGTGCATCACTTGCGGAGGAAGATGATATACTTACTGAATCAAAAATCACGGCATTTTTGGATGAGAAGGCCCTAGAACTTAAAAAGCTGCAAACGCCATTATTTGAAGAGTTCTACAACAGCTTGAATGTAATTTGCTCTCCAAATTTTGCGGATAACTCGCCTGATGAACCCACCTCAAGGTACTTGAAATTACCTCCCAAAACTAGATCACCTAGTCGGGGAGTAGCTGATGCTCTTATTACTGGAAGCCCTGGGAGCAATGGCAGGCGCGTTTCAAATATTGGCAATGCAAATGTTCAAACTGCACAGGACATGCCATCTCCTCCACGCAGTCAGCAAGAGCCAGGCAGTCCAAGTATAAGCTCCTCTGAAAGAGAGAGGAAGTGGAAAGAAGAGCTTGATCTAGAGCTTGCAAGAAAGCGAGAGATGATGCGCCAAGCAGGTGTAGGAGGGAAGACATCATCTCCGAACGATCGAGGTTTAAATAGGCAGAGAGAACGAACTAGGTTTGCTTCTCCAGGCAAATGA

Protein Analysis

474

Amino Acids

52.02

Weight (kDa)

5.24

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1325
AasI GACNNNNNNGTC 1 cut(s) 292
Acc36I ACCTGC 2 cut(s) 510, 1325
AccII CGCG 1 cut(s) 1164
AciI CCGC 3 cut(s) 891, 905, 1043
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 778, 1036
AcuI CTGAAG 2 cut(s) 171, 383
AfaI GTAC 5 cut(s) 130, 208, 254, 451, 1076
AfiI CCNNNNNNNGG 4 cut(s) 108, 614, 1071, 1112
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 5 cut(s) 998, 1018, 1081, 1170, 1193
AjnI CCWGG 3 cut(s) 1144, 1237, 1411
AjuI GAANNNNNNNTTGG 4 cut(s) 223, 255, 816, 848
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 2 cut(s) 222, 960
ApeKI GCWGC 2 cut(s) 266, 979
ApoI RAATTY 2 cut(s) 778, 1036
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 1164, 1329
AspS9I GGNCC 1 cut(s) 961
AsuHPI GGTGA 2 cut(s) 812, 1095
BaeI ACNNNNGTAYC 2 cut(s) 657, 690
BalI TGGCCA 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 903, 935
BbsI GAAGAC 1 cut(s) 1355
BbvI GCAGC 2 cut(s) 253, 966
BccI CCATC 4 cut(s) 136, 214, 493, 1219
BceAI ACGGC 1 cut(s) 957
BciT130I CCWGG 3 cut(s) 1146, 1239, 1413
BciVI GTATCC 1 cut(s) 805
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 5 cut(s) 965, 1098, 1107, 1298, 1398
BfuAI ACCTGC 2 cut(s) 510, 1325
BfuI GTATCC 1 cut(s) 805
BglII AGATCT 1 cut(s) 805
BisI GCNGC 2 cut(s) 267, 980
BlsI GCNGC 2 cut(s) 268, 981
Bme1390I CCNGG 3 cut(s) 1146, 1239, 1413
BmgT120I GGNCC 1 cut(s) 961
BmiI GGNNCC 3 cut(s) 147, 245, 366
BmrFI CCNGG 3 cut(s) 1146, 1239, 1413
BmrI ACTGGG 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 426
BoxI GACNNNNGTC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 1355
BpmI CTGGAG 2 cut(s) 146, 1395
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 1054
BsaBI GATNNNNATC 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 239, 1144, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 1342, 1372
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 614, 1071, 1112
Bse1I ACTGG 5 cut(s) 143, 172, 232, 421, 1141
Bse3DI GCAATG 2 cut(s) 1159, 1186
Bse8I GATNNNNATC 1 cut(s) 484
BseBI CCWGG 3 cut(s) 1146, 1239, 1413
BseDI CCNNGG 3 cut(s) 239, 1144, 1145
BseGI GGATG 8 cut(s) 53, 74, 147, 209, 298, 403, 580, 958
BseJI GATNNNNATC 1 cut(s) 484
BseLI CCNNNNNNNGG 4 cut(s) 108, 614, 1071, 1112
BseMI GCAATG 2 cut(s) 1159, 1186
BseMII CTCAG 3 cut(s) 303, 381, 449
BseNI ACTGG 5 cut(s) 143, 172, 232, 421, 1141
BseRI GAGGAG 2 cut(s) 1206, 1249
BseXI GCAGC 2 cut(s) 253, 966
BseYI CCCAGC 1 cut(s) 688
BsgI GTGCAG 2 cut(s) 488, 1182
Bsh1236I CGCG 1 cut(s) 1164
Bsh1285I CGRYCG 1 cut(s) 1369
BshFI GGCC 2 cut(s) 224, 962
BsiEI CGRYCG 1 cut(s) 1369
BsiSI CCGG 1 cut(s) 840
BslFI GGGAC 2 cut(s) 23, 298
BslI CCNNNNNNNGG 4 cut(s) 108, 614, 1071, 1112
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 23, 298
BsnI GGCC 2 cut(s) 224, 962
Bsp143I GATC 5 cut(s) 479, 805, 1100, 1294, 1366
BspACI CCGC 3 cut(s) 891, 905, 1043
BspANI GGCC 2 cut(s) 224, 962
BspCNI CTCAG 3 cut(s) 304, 382, 448
BspFNI CGCG 1 cut(s) 1164
BspLI GGNNCC 3 cut(s) 147, 245, 366
BspMI ACCTGC 2 cut(s) 510, 1325
BspQI GCTCTTC 1 cut(s) 1281
BsrDI GCAATG 2 cut(s) 1159, 1186
BsrI ACTGG 5 cut(s) 143, 172, 232, 421, 1141
BssECI CCNNGG 3 cut(s) 239, 1144, 1145
BssMI GATC 5 cut(s) 479, 805, 1100, 1294, 1366
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 1146, 1239, 1413
Bst4CI ACNGT 2 cut(s) 211, 252
Bst6I CTCTTC 3 cut(s) 278, 993, 1281
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 3 cut(s) 96, 1160, 1305
BstDEI CTNAG 4 cut(s) 114, 312, 390, 435
BstF5I GGATG 8 cut(s) 53, 74, 147, 209, 298, 403, 580, 958
BstFNI CGCG 1 cut(s) 1164
BstHHI GCGC 2 cut(s) 1164, 1329
BstKTI GATC 5 cut(s) 482, 808, 1103, 1297, 1369
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 5 cut(s) 479, 805, 1100, 1294, 1366
BstMCI CGRYCG 1 cut(s) 1369
BstMWI GCNNNNNNNGC 3 cut(s) 902, 985, 1149
BstNI CCWGG 3 cut(s) 1146, 1239, 1413
BstNSI RCATGY 2 cut(s) 643, 1210
BstPAI GACNNNNGTC 1 cut(s) 642
BstSCI CCNGG 3 cut(s) 1144, 1237, 1411
BstUI CGCG 1 cut(s) 1164
BstV1I GCAGC 2 cut(s) 253, 966
BstV2I GAAGAC 1 cut(s) 1355
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 2 cut(s) 224, 962
BtsCI GGATG 8 cut(s) 53, 74, 147, 209, 298, 403, 580, 958
BtsIMutI CAGTG 3 cut(s) 225, 387, 744
BveI ACCTGC 2 cut(s) 510, 1325
Cac8I GCNNGC 3 cut(s) 96, 1160, 1305
CfoI GCGC 2 cut(s) 1164, 1329
Cfr13I GGNCC 1 cut(s) 961
Csp6I GTAC 5 cut(s) 129, 207, 253, 450, 1075
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 3 cut(s) 460, 640, 1207
CviQI GTAC 5 cut(s) 129, 207, 253, 450, 1075
DdeI CTNAG 4 cut(s) 114, 312, 390, 435
DpnI GATC 5 cut(s) 481, 807, 1102, 1296, 1368
DpnII GATC 5 cut(s) 479, 805, 1100, 1294, 1366
DraI TTTAAA 1 cut(s) 1377
DrdI GACNNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 278, 993, 1281
EarI CTCTTC 3 cut(s) 278, 993, 1281
Eco130I CCWWGG 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 171, 383
EcoO109I RGGNCCY 1 cut(s) 961
EcoRII CCWGG 3 cut(s) 1144, 1237, 1411
EcoT14I CCWWGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 463, 643, 1210
FalI AAGNNNNNCTT 2 cut(s) 1275, 1307
FaqI GGGAC 2 cut(s) 23, 298
FatI CATG 3 cut(s) 459, 639, 1206
FauNDI CATATG 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 267, 980
FokI GGATG 8 cut(s) 60, 61, 154, 216, 285, 390, 567, 965
Fsp4HI GCNGC 2 cut(s) 267, 980
FspBI CTAG 5 cut(s) 965, 1098, 1107, 1298, 1398
GlaI GCGC 2 cut(s) 1163, 1328
GluI GCNGC 2 cut(s) 267, 980
GsaI CCCAGC 1 cut(s) 692
GsuI CTGGAG 2 cut(s) 146, 1395
HaeIII GGCC 2 cut(s) 224, 962
HapII CCGG 1 cut(s) 840
HhaI GCGC 2 cut(s) 1164, 1329
Hin1II CATG 3 cut(s) 463, 643, 1210
Hin6I GCGC 2 cut(s) 1162, 1327
HinP1I GCGC 2 cut(s) 1162, 1327
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 431, 467, 533, 929
HpaII CCGG 1 cut(s) 840
HphI GGTGA 2 cut(s) 812, 1095
Hpy166II GTNNAC 2 cut(s) 131, 522
Hpy188I TCNGA 6 cut(s) 391, 472, 538, 648, 1264, 1362
Hpy188III TCNNGA 5 cut(s) 149, 163, 809, 849, 1298
Hpy8I GTNNAC 2 cut(s) 131, 522
HpyAV CCTTC 2 cut(s) 118, 952
HpyCH4III ACNGT 2 cut(s) 211, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 902, 985, 1149
HpyF3I CTNAG 4 cut(s) 114, 312, 390, 435
Hsp92II CATG 3 cut(s) 463, 643, 1210
HspAI GCGC 2 cut(s) 1162, 1327
Kzo9I GATC 5 cut(s) 479, 805, 1100, 1294, 1366
LguI GCTCTTC 1 cut(s) 1281
LmnI GCTCC 5 cut(s) 20, 151, 243, 1149, 1262
Lsp1109I GCAGC 2 cut(s) 253, 966
MaeI CTAG 5 cut(s) 965, 1098, 1107, 1298, 1398
MaeIII GTNAC 1 cut(s) 412
MalI GATC 5 cut(s) 481, 807, 1102, 1296, 1368
MboI GATC 5 cut(s) 479, 805, 1100, 1294, 1366
MboII GAAGA 8 cut(s) 265, 476, 630, 687, 923, 1010, 1298, 1360
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 805
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 7 cut(s) 550, 778, 825, 855, 1023, 1036, 1082
MluNI TGGCCA 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 181, 589
Mox20I TGGCCA 1 cut(s) 224
Mph1103I ATGCAT 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 224
MseI TTAA 5 cut(s) 15, 717, 726, 972, 1376
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 1 cut(s) 840
MspR9I CCNGG 3 cut(s) 1146, 1239, 1413
MunI CAATTG 1 cut(s) 855
MvaI CCWGG 3 cut(s) 1146, 1239, 1413
MvnI CGCG 1 cut(s) 1164
MwoI GCNNNNNNNGC 3 cut(s) 902, 985, 1149
NdeI CATATG 1 cut(s) 426
NdeII GATC 5 cut(s) 479, 805, 1100, 1294, 1366
NlaIII CATG 3 cut(s) 463, 643, 1210
NlaIV GGNNCC 3 cut(s) 147, 245, 366
NmeAIII GCCGAG 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 2 cut(s) 643, 1210
PaqCI CACCTGC 1 cut(s) 1325
PasI CCCWGGG 1 cut(s) 1145
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 1281
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 4 cut(s) 431, 467, 533, 929
PkrI GCNGC 2 cut(s) 268, 981
Ple19I CGATCG 1 cut(s) 1369
PscI ACATGT 1 cut(s) 639
PshAI GACNNNNGTC 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 1144, 1237, 1411
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 3 cut(s) 1144, 1237, 1411
PspN4I GGNNCC 3 cut(s) 147, 245, 366
PspPI GGNCC 1 cut(s) 961
PsuI RGATCY 1 cut(s) 805
PvuI CGATCG 1 cut(s) 1369
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 5 cut(s) 130, 208, 254, 451, 1076
RsaNI GTAC 5 cut(s) 129, 207, 253, 450, 1075
SapI GCTCTTC 1 cut(s) 1281
SaqAI TTAA 5 cut(s) 15, 717, 726, 972, 1376
SatI GCNGC 2 cut(s) 267, 980
Sau3AI GATC 5 cut(s) 479, 805, 1100, 1294, 1366
Sau96I GGNCC 1 cut(s) 961
ScrFI CCNGG 3 cut(s) 1146, 1239, 1413
SmlI CTYRAG 1 cut(s) 1069
SmoI CTYRAG 1 cut(s) 1069
Sse9I AATT 7 cut(s) 550, 778, 825, 855, 1023, 1036, 1082
SsiI CCGC 3 cut(s) 891, 905, 1043
SspI AATATT 1 cut(s) 1174
SspMI CTAG 5 cut(s) 965, 1098, 1107, 1298, 1398
StyD4I CCNGG 3 cut(s) 1144, 1237, 1411
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 211, 252
TaqI TCGA 2 cut(s) 478, 1369
TasI AATT 7 cut(s) 550, 778, 825, 855, 1023, 1036, 1082
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 4 cut(s) 431, 467, 533, 929
Tru1I TTAA 5 cut(s) 15, 717, 726, 972, 1376
Tru9I TTAA 5 cut(s) 15, 717, 726, 972, 1376
TscAI CASTG 3 cut(s) 232, 387, 751
TseI GCWGC 2 cut(s) 266, 979
TspDTI ATGAA 3 cut(s) 137, 870, 1074
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 3 cut(s) 232, 387, 751
XapI RAATTY 2 cut(s) 778, 1036
XbaI TCTAGA 1 cut(s) 1297
XceI RCATGY 2 cut(s) 643, 1210
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 5 cut(s) 965, 1098, 1107, 1298, 1398
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.