Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

18667598 .. 18669076

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG187000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCATGGGAAATCCTCCTTGGAACAAACATTTCGAACGGGAACCAAATTTGAGGCCATCCGCGTCTGAGCTGCTTCAGCATCCTTTTTTAACTGGGAAACAAGGGAAATCTCAGTCTGGTGGTCATACTGCTTCTATGGAAATGAGTTCCTTTCAGGGGTGTCATGAAGTTATTAACCCCATCATGGAACTGGAAGGAGTGGTATCCATAGAGTCTGAAACATGTGATGAAGATATTGGTAGCACTTGGAGCGACCATAGTTCCGACTCCAATAATCCAGCCGCTCACGCCAATAAACATATCTTTTCAATATTCTTTAGAAAGTTTAAGAGACCAACAATAACTCCTAGTCATGGATCTACAAAGGGCAAGTTCAGCTATGCATCTATCAAGTTGGCCACATGCAACTTCTCTGAGGAAAACAAGCTCGGACAAGGGGGATTTGGATGTGTGTATAAGGGAATCGTGGAGACTGGACAACAGGTAGCTGTGAAAAGGCTTTCACTATATTCAGGGCAAGGATTTTCGGAGTTTAATAATGAACTGAGAACTATAGGTGAACTCCAACATAGAAACGTTATTCAGATTGTAGGATATTGCATTCATGGTGATGAGAGAATATTAATATACGAGTTCATGCCAAAAATTCATCCAAAAGCTTGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04722 ko04912 ko05166 map04010 map04016 map04722 map04912 map05166

Pfam Domains

Protein Families

Pkinase

Protein Analysis

223

Amino Acids

24.84

Weight (kDa)

6.83

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	139 - 216	5.6e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	141 - 216	5e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 285
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	1 cut(s)	367
AcoI	YGGCCR	2 cut(s)	3, 399
AcsI	RAATTY	2 cut(s)	49, 648
AcuI	CTGAAG	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	159, 187, 356
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	5 cut(s)	73, 381, 430, 491, 662
AluI	AGCT	5 cut(s)	73, 381, 430, 491, 662
Alw26I	GTCTC	2 cut(s)	328, 467
AlwI	GGATC	1 cut(s)	367
AoxI	GGCC	3 cut(s)	3, 56, 399
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	49, 648
AseI	ATTAAT	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	572, 623
AsuII	TTCGAA	1 cut(s)	36
BalI	TGGCCA	2 cut(s)	5, 401
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	67, 191
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	328, 467
BfaI	CTAG	2 cut(s)	351, 670
BfmI	CTRYAG	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	74, 285
BlsI	GCNGC	2 cut(s)	75, 286
BmiI	GGNNCC	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	91, 395
BmuI	ACTGGG	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	6, 20
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 187, 356
Bse1I	ACTGG	3 cut(s)	100, 198, 481
BseDI	CCNNGG	2 cut(s)	6, 20
BseGI	GGATG	4 cut(s)	59, 82, 455, 652
BseLI	CCNNNNNNNGG	3 cut(s)	159, 187, 356
BseMII	CTCAG	4 cut(s)	60, 128, 408, 539
BseNI	ACTGG	3 cut(s)	100, 198, 481
BseXI	GCAGC	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	5, 58, 401
BslI	CCNNNNNNNGG	3 cut(s)	159, 187, 356
BsmAI	GTCTC	2 cut(s)	328, 467
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	5, 58, 401
Bso31I	GGTCTC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	359
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	63, 285
BspANI	GGCC	3 cut(s)	5, 58, 401
BspCNI	CTCAG	4 cut(s)	61, 127, 409, 540
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	100, 198, 481
BssECI	CCNNGG	2 cut(s)	6, 20
BssMI	GATC	1 cut(s)	359
BssT1I	CCWWGG	2 cut(s)	6, 20
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	4 cut(s)	69, 114, 417, 548
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	4 cut(s)	59, 82, 455, 652
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	362
BstMAI	GTCTC	2 cut(s)	328, 467
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 252, 290, 378
BstNSI	RCATGY	2 cut(s)	228, 408
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	5, 58, 401
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	4 cut(s)	59, 82, 455, 652
Cac8I	GCNNGC	1 cut(s)	664
CciI	TCATGA	1 cut(s)	166
CseI	GACGC	1 cut(s)	54
CviAII	CATG	8 cut(s)	7, 167, 187, 225, 356, 405, 608, 640
DdeI	CTNAG	4 cut(s)	69, 114, 417, 548
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
EaeI	YGGCCR	2 cut(s)	3, 399
Eco130I	CCWWGG	2 cut(s)	6, 20
Eco31I	GGTCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	6, 20
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	2 cut(s)	6, 20
FaeI	CATG	8 cut(s)	10, 170, 190, 228, 359, 408, 611, 643
FatI	CATG	8 cut(s)	6, 166, 186, 224, 355, 404, 607, 639
Fnu4HI	GCNGC	2 cut(s)	74, 285
FokI	GGATG	4 cut(s)	46, 69, 462, 639
Fsp4HI	GCNGC	2 cut(s)	74, 285
FspBI	CTAG	2 cut(s)	351, 670
GluI	GCNGC	2 cut(s)	74, 285
HaeIII	GGCC	3 cut(s)	5, 58, 401
HgaI	GACGC	1 cut(s)	54
Hin1II	CATG	8 cut(s)	10, 170, 190, 228, 359, 408, 611, 643
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	215, 269, 465
HphI	GGTGA	2 cut(s)	572, 623
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	7 cut(s)	70, 220, 268, 418, 434, 532, 588
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	3 cut(s)	386, 408, 603
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 252, 290, 378
HpyF3I	CTNAG	4 cut(s)	69, 114, 417, 548
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	8 cut(s)	10, 170, 190, 228, 359, 408, 611, 643
Kzo9I	GATC	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	8 cut(s)	81, 105, 143, 179, 294, 462, 470, 501
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	91, 395
MaeI	CTAG	2 cut(s)	351, 670
MaeII	ACGT	1 cut(s)	579
MalI	GATC	1 cut(s)	361
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	1 cut(s)	359
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	1 cut(s)	359
MlsI	TGGCCA	2 cut(s)	5, 401
MluCI	AATT	2 cut(s)	49, 648
MluNI	TGGCCA	2 cut(s)	5, 401
MlyI	GAGTC	2 cut(s)	224, 263
MmeI	TCCRAC	2 cut(s)	291, 592
MnlI	CCTC	3 cut(s)	27, 48, 412
Mox20I	TGGCCA	2 cut(s)	5, 401
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	2 cut(s)	5, 401
MseI	TTAA	5 cut(s)	92, 177, 330, 537, 626
MslI	CAYNNNNRTG	1 cut(s)	612
Msp20I	TGGCCA	2 cut(s)	5, 401
Mva1269I	GAATGC	1 cut(s)	603
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	79, 252, 290, 378
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	359
NlaIII	CATG	8 cut(s)	10, 170, 190, 228, 359, 408, 611, 643
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	2 cut(s)	228, 408
NspV	TTCGAA	1 cut(s)	36
PagI	TCATGA	1 cut(s)	166
PciI	ACATGT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	2 cut(s)	75, 286
PleI	GAGTC	2 cut(s)	223, 263
PpsI	GAGTC	2 cut(s)	223, 263
PscI	ACATGT	1 cut(s)	224
PshBI	ATTAAT	1 cut(s)	626
Psp1406I	AACGTT	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	5 cut(s)	92, 177, 330, 537, 626
SatI	GCNGC	2 cut(s)	74, 285
Sau3AI	GATC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	224, 263
SetI	ASST	8 cut(s)	75, 383, 432, 489, 493, 562, 582, 664
SfaNI	GCATC	2 cut(s)	91, 395
SfcI	CTRYAG	1 cut(s)	555
SfuI	TTCGAA	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	2 cut(s)	49, 648
SsiI	CCGC	2 cut(s)	63, 285
SspI	AATATT	2 cut(s)	315, 624
SspMI	CTAG	2 cut(s)	351, 670
StyI	CCWWGG	2 cut(s)	6, 20
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	49, 648
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	5 cut(s)	92, 177, 330, 537, 626
Tru9I	TTAA	5 cut(s)	92, 177, 330, 537, 626
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	6 cut(s)	183, 246, 558, 596, 628, 641
VspI	ATTAAT	1 cut(s)	626
XapI	RAATTY	2 cut(s)	49, 648
XceI	RCATGY	2 cut(s)	228, 408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	351, 670
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.