Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Forward (+)

16649644 .. 16650331

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCAAGACATCTTTGGATCAGTCCGCCGATCACTCGTGTTCCGGCCACCGGACACCGACGACTCCCCGGTAACCCTAGTCGACAAGATCACCGCCTCCCTTCGGAAATTCCGAGTCTTCTCCAAAACCTCCCCGCCGCCGCCGCCGTCCTCTTTCGTCTCCAAAGAGACCGCGCCTTTGATCCGATGGCGCAATGGCGAGTTGATCGGCTGTGGCGCCTTCGGCCGCGTCTACATGGGCATGAATCTCGGCTCTGGCGAGCTTCTGGCCGTTAAGCAGGTTCTTATCGCAGTGAATAGCAAGGAGAAAGCTCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

107

Amino Acids

11.61

Weight (kDa)

10.0

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	2 cut(s)	81, 231
AccII	CGCG	2 cut(s)	173, 228
AciI	CCGC	8 cut(s)	25, 93, 134, 137, 140, 143, 171, 226
AclWI	GGATC	2 cut(s)	25, 175
AcoI	YGGCCR	3 cut(s)	44, 223, 267
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	49, 102
AluBI	AGCT	2 cut(s)	262, 311
AluI	AGCT	2 cut(s)	262, 311
Alw26I	GTCTC	2 cut(s)	161, 163
AlwI	GGATC	2 cut(s)	25, 175
AoxI	GGCC	3 cut(s)	44, 223, 267
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	3 cut(s)	175, 192, 218
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	109
BccI	CCATC	1 cut(s)	180
BceAI	ACGGC	2 cut(s)	130, 254
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	161, 163
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	4 cut(s)	137, 140, 143, 226
BlsI	GCNGC	4 cut(s)	138, 141, 144, 227
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 102
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	49, 102
BseMI	GCAATG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	173, 228
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	46, 225, 269
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	43, 50, 68
BslI	CCNNNNNNNGG	2 cut(s)	49, 102
BsmAI	GTCTC	2 cut(s)	161, 163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	46, 225, 269
Bso31I	GGTCTC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	17, 29, 87, 180, 204
BspACI	CCGC	8 cut(s)	25, 93, 134, 137, 140, 143, 171, 226
BspANI	GGCC	3 cut(s)	46, 225, 269
BspFNI	CGCG	2 cut(s)	173, 228
BspLI	GGNNCC	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	25, 175
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	5 cut(s)	17, 29, 87, 180, 204
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	70
BstFNI	CGCG	2 cut(s)	173, 228
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	3 cut(s)	175, 192, 218
BstKTI	GATC	5 cut(s)	20, 32, 90, 183, 207
BstMAI	GTCTC	2 cut(s)	161, 163
BstMBI	GATC	5 cut(s)	17, 29, 87, 180, 204
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 222
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	173, 228
BstV2I	GAAGAC	1 cut(s)	109
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	46, 225, 269
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	3 cut(s)	175, 192, 218
CseI	GACGC	1 cut(s)	217
CviAII	CATG	2 cut(s)	235, 241
CviJI	RGCY	7 cut(s)	46, 210, 225, 252, 262, 269, 311
CviKI_1	RGCY	7 cut(s)	46, 210, 225, 252, 262, 269, 311
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	5 cut(s)	19, 31, 89, 182, 206
DpnII	GATC	5 cut(s)	17, 29, 87, 180, 204
EaeI	YGGCCR	3 cut(s)	44, 223, 267
EagI	CGGCCG	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	238, 244
FaiI	YATR	2 cut(s)	236, 242
FatI	CATG	2 cut(s)	234, 240
FauI	CCCGC	1 cut(s)	141
FblI	GTMKAC	2 cut(s)	81, 231
Fnu4HI	GCNGC	4 cut(s)	137, 140, 143, 226
Fsp4HI	GCNGC	4 cut(s)	137, 140, 143, 226
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	3 cut(s)	174, 191, 217
GluI	GCNGC	4 cut(s)	137, 140, 143, 226
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	46, 225, 269
HapII	CCGG	3 cut(s)	43, 50, 68
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	3 cut(s)	175, 192, 218
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	238, 244
Hin6I	GCGC	3 cut(s)	173, 190, 216
HinP1I	GCGC	3 cut(s)	173, 190, 216
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	62, 114, 244
HpaII	CCGG	3 cut(s)	43, 50, 68
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	82, 232
Hpy188I	TCNGA	3 cut(s)	105, 113, 185
Hpy8I	GTNNAC	2 cut(s)	82, 232
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	110, 229
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 222
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	238, 244
HspAI	GCGC	3 cut(s)	173, 190, 216
KasI	GGCGCC	1 cut(s)	215
Kzo9I	GATC	5 cut(s)	17, 29, 87, 180, 204
LpnPI	CCDG	6 cut(s)	56, 63, 81, 240, 251, 263
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	19, 31, 89, 182, 206
MboI	GATC	5 cut(s)	17, 29, 87, 180, 204
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	1 cut(s)	107
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	56, 123
MnlI	CCTC	3 cut(s)	106, 139, 160
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	3 cut(s)	43, 50, 68
MspR9I	CCNGG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	173, 228
MwoI	GCNNNNNNNGC	2 cut(s)	142, 222
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	5 cut(s)	17, 29, 87, 180, 204
NlaIII	CATG	2 cut(s)	238, 244
NlaIV	GGNNCC	1 cut(s)	217
NmeAIII	GCCGAG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	109, 255
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	138, 141, 144, 227
PleI	GAGTC	2 cut(s)	56, 122
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	2 cut(s)	56, 122
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	137, 140, 143, 226
Sau3AI	GATC	5 cut(s)	17, 29, 87, 180, 204
SchI	GAGTC	2 cut(s)	56, 123
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	4 cut(s)	131, 264, 282, 313
SfoI	GGCGCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	8 cut(s)	25, 93, 134, 137, 140, 143, 171, 226
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	107
TauI	GCSGC	4 cut(s)	139, 142, 145, 228
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	2 cut(s)	81, 231
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.