Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Forward (+)

4237804 .. 4244042

Gene Structure 6239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTCGTCTTCCGACCTCCGCCGCCGGACACCGACGACTCCCCGGTAACCCTAGTCGACAAGATCACCTCCTCTATTCGAAAATCCAGAGTCTTCTCCAAACCCTCGCCTCCGCCGCCGCCCAAGGACGCCGCGCCTCCGATCCGATGGCGAAAAGGAGAGTTGATCGGCTGCGGCGCCTTTGGCCGCGTCTACATGGGCATGAATCTCGGCTCCGGCGAGCTTCTCGCTGTGAAACAGGTTCTTATCGCAGTAAATAGTGCTTCCAAGGAGAAAGCTCAGGCTCACATCAAGGAGCTTGAGGAAGAAGTGAAGCTTCTAAAGAATCTGTCTCATCCAAACATTGTTAGATATTTGGGTACAGTGAGGGAGGAGGAAACCTTGAACATTCTGTTGGAGTTTGTCCCTGGTGGATCTATATCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTGTAATGAGAACATACACCAAGCAGCTGTTGTTGGGACTAGAATATTTACACAAAAATGGGATAATGCACAGGGACATTAAGGGAGCAAATATCCTTGTTGACAATAAAGGATGCATTAAGCTTGCAGATTTTGGTGCATCGAAACAGGTCGTGGAGCTGGCAACCATCTCTGGTGCTAAGTCTATGAAGGGTACACCATACTGGATGGCTCCTGAAGTTATTCGTCAGACTGGTCATAGCTTCTCTGCTGATATATGGAGCGTTGGATGTACTGTGATCGAGATGGCCACCGGAAAGCCTCCTTGGAGCGAACAGTACCAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACGAAGTCTCATCCACCAATCCCTGAGCATATTTCCTTTGAGGCGAAAGACTTTTTGTTAAAATGTCTGCAAAAGGAGCCAAATTTGAGGCCGACGGCATCTGAGTTGCTTCAGCATCCATTTGTGACTGGGCAACCTGTGGACTCTCATCCTGTTTTGCGTCCTTCTATCATGGAAGATTCTGAGATCCCTGCTCCATCATATTCATCAAACCTACAGACCTTTGAGATGTCAACGTGCCGAGATTCATCTGATATGTGTAATATGGGTAGTTTGCACTGCTCAATCATAAATCCTGACAAGGTGTTGGAAAGTACACACATTTGGGGAAGAGACAGTGATGATGACATGTGTCAGATTGATGACAAAGATGATATGGTCGGTGAAGTAAACCTCAATTCTTCTTATATGCCCGACGAACTTAAGAGCTTTAACCCGATGTGCGAGCCCACTGATGAGATGAGGTGCCAACTTCATGGAAGTTCAGAAACCGAACAAAATGGGATGGATCTGGATACTAGCCACCAAACTGATTTTCCTGCTGGCTGCTCTGGAACAATGGGTGCGGGTGAAAAAGATTTTTCATTTCCTTGTGGACCATCTCTTTCAGAGGATGATGATGAACTTACTGAATCAAAAATTACTGCATTCTTGGATGAAAAGGCTCTAGAACTGAAAAAACTGCAAACACCTCTATACGAAGAGTTTTACAACAGCATGAATGTAGTGTGCTCTCCAAGTTTTATGGATAGCTCGCCTGATGAAACTACTTCGAAGTACTTGAAATTACCTCCCAAAAGCAGATCACCCAAACGGAGTCCAATTGGCACTCCATCTGCAGTAGCTGATGCACTTAGTACTGTAAGCCCTGGGAGTAGTGGTAGGCGTGTATCAAATATTGGCAATGCAAGTGATCAAAACTCAAAGGACATGTCGTCACCTCCTCACACTGATTGGAAAGGGCTTGGAGTTGATGCTCAGCAAGAGCCAGGAAGCCCAAGTATGAGCTTCTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTAGAGAGAAAGCGAGAGATGATGCGCCAAGCAGGTGTAGGGAAAACATCATCGCCAAAGGATCGAGCTTTAAATAGGCAGAGAGAGCGCACAAGGTTTGCATCTCCAGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

669

Amino Acids

73.87

Weight (kDa)

5.6

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 322	2.4e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	63 - 318	1e-48	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	175 - 250	1.1e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1916
AasI	GACNNNNNNGTC	1 cut(s)	844
Acc36I	ACCTGC	1 cut(s)	1916
AccB1I	GGYRCC	2 cut(s)	206, 1305
AccI	GTMKAC	2 cut(s)	87, 222
AccII	CGCG	2 cut(s)	164, 219
AciI	CCGC	9 cut(s)	50, 53, 143, 146, 149, 162, 204, 217, 1406
AclWI	GGATC	7 cut(s)	25, 166, 451, 481, 1021, 1356, 1962
AcoI	YGGCCR	2 cut(s)	214, 774
AcsI	RAATTY	2 cut(s)	467, 922
AcuI	CTGAAG	2 cut(s)	723, 935
AcyI	GRCGYC	2 cut(s)	159, 207
AfaI	GTAC	7 cut(s)	391, 682, 760, 806, 1156, 1619, 1699
AflII	CTTAAG	1 cut(s)	1262
AflIII	ACRYGT	2 cut(s)	1188, 1770
AgsI	TTSAA	2 cut(s)	415, 1624
AhdI	GACNNNNNGTC	1 cut(s)	1774
AjnI	CCWGG	4 cut(s)	436, 1708, 1828, 1999
AjuI	GAANNNNNNNTTGG	6 cut(s)	407, 439, 775, 807, 1359, 1391
Alw21I	GWGCWC	1 cut(s)	1574
Alw26I	GTCTC	4 cut(s)	366, 852, 1167, 1852
AlwI	GGATC	7 cut(s)	25, 166, 451, 481, 1021, 1356, 1962
AlwNI	CAGNNNCTG	1 cut(s)	1685
AoxI	GGCC	3 cut(s)	214, 774, 929
ApeKI	GCWGC	4 cut(s)	201, 511, 818, 1386
ApoI	RAATTY	2 cut(s)	467, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	1757, 1789
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	4 cut(s)	166, 209, 1920, 1983
AspS9I	GGNCC	1 cut(s)	1436
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	5 cut(s)	88, 1235, 1421, 1638, 1770
AsuII	TTCGAA	2 cut(s)	109, 1613
AvaII	GGWCC	1 cut(s)	1436
AxyI	CCTNAGG	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	776
BanI	GGYRCC	2 cut(s)	206, 1305
BanII	GRGCYC	1 cut(s)	1290
BbsI	GAAGAC	2 cut(s)	31, 115
Bbv12I	GWGCWC	1 cut(s)	1574
BbvI	GCAGC	4 cut(s)	188, 523, 805, 1373
BccI	CCATC	8 cut(s)	171, 662, 688, 766, 1045, 1339, 1447, 1681
BceAI	ACGGC	1 cut(s)	951
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	4 cut(s)	438, 1710, 1830, 2001
BciVI	GTATCC	1 cut(s)	1348
BclI	TGATCA	2 cut(s)	1753, 1885
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	4 cut(s)	366, 852, 1167, 1852
BfaI	CTAG	5 cut(s)	83, 527, 1359, 1508, 1895
BfmI	CTRYAG	2 cut(s)	1055, 1677
BfoI	RGCGCY	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	1262
BfuAI	ACCTGC	1 cut(s)	1916
BfuI	GTATCC	1 cut(s)	1348
BlpI	GCTNAGC	1 cut(s)	1818
BmcAI	AGTACT	2 cut(s)	1619, 1699
Bme1390I	CCNGG	5 cut(s)	74, 438, 1710, 1830, 2001
Bme18I	GGWCC	1 cut(s)	1436
BmeRI	GACNNNNNGTC	1 cut(s)	1774
BmgT120I	GGNCC	1 cut(s)	1436
BmiI	GGNNCC	5 cut(s)	208, 244, 699, 918, 1307
BmrFI	CCNGG	5 cut(s)	74, 438, 1710, 1830, 2001
BmrI	ACTGGG	1 cut(s)	978
BmsI	GCATC	8 cut(s)	590, 635, 947, 964, 1678, 1804, 1905, 2003
BmuI	ACTGGG	1 cut(s)	978
BoxI	GACNNNNGTC	1 cut(s)	1191
BpiI	GAAGAC	2 cut(s)	31, 115
BpmI	CTGGAG	1 cut(s)	1983
Bpu10I	CCTNAGC	2 cut(s)	309, 864
Bpu1102I	GCTNAGC	1 cut(s)	1818
Bpu14I	TTCGAA	2 cut(s)	109, 1613
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	448
BsaHI	GRCGYC	2 cut(s)	159, 207
BsaJI	CCNNGG	7 cut(s)	72, 153, 297, 436, 791, 1708, 1709
BsaWI	WCCGGW	1 cut(s)	779
BsaXI	ACNNNNNCTCC	2 cut(s)	1705, 1735
Bse1I	ACTGG	3 cut(s)	695, 724, 973
Bse21I	CCTNAGG	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	1750
Bse8I	GATNNNNATC	1 cut(s)	448
BseBI	CCWGG	4 cut(s)	438, 1710, 1830, 2001
BseDI	CCNNGG	7 cut(s)	72, 153, 297, 436, 791, 1708, 1709
BseJI	GATNNNNATC	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	1750
BseMII	CTCAG	7 cut(s)	323, 474, 855, 933, 1014, 1832, 1845
BseNI	ACTGG	3 cut(s)	695, 724, 973
BseRI	GAGGAG	3 cut(s)	91, 416, 1773
BseXI	GCAGC	4 cut(s)	188, 523, 805, 1373
Bsh1236I	CGCG	2 cut(s)	164, 219
BshFI	GGCC	3 cut(s)	216, 776, 931
BshNI	GGYRCC	2 cut(s)	206, 1305
BsiHKAI	GWGCWC	1 cut(s)	1574
BsiSI	CCGG	4 cut(s)	56, 74, 246, 780
BslFI	GGGAC	4 cut(s)	419, 537, 575, 850
BsmAI	GTCTC	4 cut(s)	366, 852, 1167, 1852
BsmFI	GGGAC	4 cut(s)	419, 537, 575, 850
BsmI	GAATGC	1 cut(s)	1487
BsnI	GGCC	3 cut(s)	216, 776, 931
Bsp119I	TTCGAA	2 cut(s)	109, 1613
Bsp1286I	GDGCHC	2 cut(s)	1290, 1574
Bsp1720I	GCTNAGC	1 cut(s)	1818
BspACI	CCGC	9 cut(s)	50, 53, 143, 146, 149, 162, 204, 217, 1406
BspANI	GGCC	3 cut(s)	216, 776, 931
BspCNI	CTCAG	7 cut(s)	322, 475, 856, 934, 1015, 1831, 1846
BspFNI	CGCG	2 cut(s)	164, 219
BspLI	GGNNCC	5 cut(s)	208, 244, 699, 918, 1307
BspMAI	CTGCAG	1 cut(s)	1681
BspMI	ACCTGC	1 cut(s)	1916
BspPI	GGATC	7 cut(s)	25, 166, 451, 481, 1021, 1356, 1962
BspQI	GCTCTTC	1 cut(s)	1872
BspT104I	TTCGAA	2 cut(s)	109, 1613
BspT107I	GGYRCC	2 cut(s)	206, 1305
BspTI	CTTAAG	1 cut(s)	1262
BsrDI	GCAATG	1 cut(s)	1750
BsrI	ACTGG	3 cut(s)	695, 724, 973
BssECI	CCNNGG	7 cut(s)	72, 153, 297, 436, 791, 1708, 1709
BssNI	GRCGYC	2 cut(s)	159, 207
BssT1I	CCWWGG	3 cut(s)	153, 297, 791
Bst2UI	CCWGG	4 cut(s)	438, 1710, 1830, 2001
Bst4CI	ACNGT	5 cut(s)	394, 763, 804, 1178, 1702
Bst6I	CTCTTC	4 cut(s)	830, 1165, 1536, 1872
BstACI	GRCGYC	2 cut(s)	159, 207
BstAFI	CTTAAG	1 cut(s)	1262
BstBI	TTCGAA	2 cut(s)	109, 1613
BstC8I	GCNNGC	6 cut(s)	251, 612, 648, 1286, 1384, 1595
BstDEI	CTNAG	9 cut(s)	309, 483, 666, 864, 942, 1023, 1694, 1818, 1854
BstEII	GGTNACC	1 cut(s)	76
BstFNI	CGCG	2 cut(s)	164, 219
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	4 cut(s)	166, 209, 1920, 1983
BstMAI	GTCTC	4 cut(s)	366, 852, 1167, 1852
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 213, 916, 1978
BstNI	CCWGG	4 cut(s)	438, 1710, 1830, 2001
BstNSI	RCATGY	2 cut(s)	1192, 1774
BstPAI	GACNNNNGTC	1 cut(s)	1191
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	5 cut(s)	72, 436, 1708, 1828, 1999
BstSFI	CTRYAG	2 cut(s)	1055, 1677
BstUI	CGCG	2 cut(s)	164, 219
BstV1I	GCAGC	4 cut(s)	188, 523, 805, 1373
BstV2I	GAAGAC	2 cut(s)	31, 115
BstX2I	RGATCY	4 cut(s)	443, 473, 1026, 1348
BstXI	CCANNNNNNTGG	1 cut(s)	1316
BstYI	RGATCY	4 cut(s)	443, 473, 1026, 1348
Bsu36I	CCTNAGG	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	1348
BsuRI	GGCC	3 cut(s)	216, 776, 931
BtgZI	GCGATG	1 cut(s)	1929
BtsI	GCAGTG	1 cut(s)	1117
BtsIMutI	CAGTG	5 cut(s)	399, 1117, 1183, 1290, 1788
BveI	ACCTGC	1 cut(s)	1916
Cac8I	GCNNGC	6 cut(s)	251, 612, 648, 1286, 1384, 1595
CaiI	CAGNNNCTG	1 cut(s)	1685
CfoI	GCGC	4 cut(s)	166, 209, 1920, 1983
Cfr13I	GGNCC	1 cut(s)	1436
CseI	GACGC	3 cut(s)	167, 208, 989
Csp6I	GTAC	7 cut(s)	390, 681, 759, 805, 1155, 1618, 1698
CspCI	CAANNNNNGTGG	2 cut(s)	1850, 1885
CviAII	CATG	7 cut(s)	226, 232, 1012, 1189, 1316, 1558, 1771
CviQI	GTAC	7 cut(s)	390, 681, 759, 805, 1155, 1618, 1698
DdeI	CTNAG	9 cut(s)	309, 483, 666, 864, 942, 1023, 1694, 1818, 1854
DinI	GGCGCC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	1965
DrdI	GACNNNNNNGTC	1 cut(s)	844
DriI	GACNNNNNGTC	1 cut(s)	1774
DseDI	GACNNNNNNGTC	1 cut(s)	844
EaeI	YGGCCR	2 cut(s)	214, 774
Eam1104I	CTCTTC	4 cut(s)	830, 1165, 1536, 1872
Eam1105I	GACNNNNNGTC	1 cut(s)	1774
EarI	CTCTTC	4 cut(s)	830, 1165, 1536, 1872
EciI	GGCGGA	2 cut(s)	39, 132
Eco130I	CCWWGG	3 cut(s)	153, 297, 791
Eco24I	GRGCYC	1 cut(s)	1290
Eco47I	GGWCC	1 cut(s)	1436
Eco57I	CTGAAG	2 cut(s)	723, 935
Eco81I	CCTNAGG	1 cut(s)	483
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	4 cut(s)	436, 1708, 1828, 1999
EcoT14I	CCWWGG	3 cut(s)	153, 297, 791
EcoT22I	ATGCAT	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	1290
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
ErhI	CCWWGG	3 cut(s)	153, 297, 791
FaeI	CATG	7 cut(s)	229, 235, 1015, 1192, 1319, 1561, 1774
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 1866, 1898
FaqI	GGGAC	4 cut(s)	419, 537, 575, 850
FatI	CATG	7 cut(s)	225, 231, 1011, 1188, 1315, 1557, 1770
FauI	CCCGC	1 cut(s)	1399
FbaI	TGATCA	2 cut(s)	1753, 1885
FblI	GTMKAC	2 cut(s)	87, 222
FriOI	GRGCYC	1 cut(s)	1290
FspBI	CTAG	5 cut(s)	83, 527, 1359, 1508, 1895
GlaI	GCGC	4 cut(s)	165, 208, 1919, 1982
GsuI	CTGGAG	1 cut(s)	1983
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	216, 776, 931
HapII	CCGG	4 cut(s)	56, 74, 246, 780
HgaI	GACGC	3 cut(s)	167, 208, 989
HhaI	GCGC	4 cut(s)	166, 209, 1920, 1983
Hin1I	GRCGYC	2 cut(s)	159, 207
Hin1II	CATG	7 cut(s)	229, 235, 1015, 1192, 1319, 1561, 1774
Hin6I	GCGC	4 cut(s)	164, 207, 1918, 1981
HinP1I	GCGC	4 cut(s)	164, 207, 1918, 1981
HincII	GTYRAC	3 cut(s)	88, 589, 1074
HindII	GTYRAC	3 cut(s)	88, 589, 1074
HindIII	AAGCTT	2 cut(s)	344, 608
HinfI	GANTC	9 cut(s)	68, 120, 235, 355, 983, 1019, 1085, 1472, 1657
HpaII	CCGG	4 cut(s)	56, 74, 246, 780
HphI	GGTGA	5 cut(s)	88, 1235, 1421, 1638, 1770
Hpy166II	GTNNAC	9 cut(s)	88, 223, 589, 683, 982, 1074, 1157, 1231, 1436
Hpy188III	TCNNGA	8 cut(s)	117, 701, 769, 1136, 1352, 1392, 1508, 1889
Hpy8I	GTNNAC	9 cut(s)	88, 223, 589, 683, 982, 1074, 1157, 1231, 1436
Hpy99I	CGWCG	3 cut(s)	68, 937, 1259
HpyAV	CCTTC	2 cut(s)	670, 1014
HpyCH4III	ACNGT	5 cut(s)	394, 763, 804, 1178, 1702
HpyCH4IV	ACGT	1 cut(s)	1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 213, 916, 1978
HpyF3I	CTNAG	9 cut(s)	309, 483, 666, 864, 942, 1023, 1694, 1818, 1854
HpySE526I	ACGT	1 cut(s)	1076
Hsp92I	GRCGYC	2 cut(s)	159, 207
Hsp92II	CATG	7 cut(s)	229, 235, 1015, 1192, 1319, 1561, 1774
HspAI	GCGC	4 cut(s)	164, 207, 1918, 1981
KasI	GGCGCC	1 cut(s)	206
Ksp22I	TGATCA	2 cut(s)	1753, 1885
LguI	GCTCTTC	1 cut(s)	1872
LmnI	GCTCC	9 cut(s)	248, 325, 572, 643, 703, 747, 795, 916, 1039
Lsp1109I	GCAGC	4 cut(s)	188, 523, 805, 1373
LweI	GCATC	8 cut(s)	590, 635, 947, 964, 1678, 1804, 1905, 2003
MaeI	CTAG	5 cut(s)	83, 527, 1359, 1508, 1895
MaeII	ACGT	1 cut(s)	1076
MaeIII	GTNAC	3 cut(s)	76, 964, 1776
MboII	GAAGA	9 cut(s)	31, 115, 347, 817, 1028, 1182, 1233, 1553, 1889
MfeI	CAATTG	1 cut(s)	1662
MflI	RGATCY	4 cut(s)	443, 473, 1026, 1348
MhlI	GDGCHC	2 cut(s)	1290, 1574
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	6 cut(s)	467, 922, 1237, 1479, 1625, 1662
MluNI	TGGCCA	1 cut(s)	776
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	4 cut(s)	62, 129, 977, 1666
MmeI	TCCRAC	4 cut(s)	67, 405, 733, 1128
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	6 cut(s)	567, 606, 899, 1263, 1272, 1964
MslI	CAYNNNNRTG	2 cut(s)	230, 543
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	514
MspCI	CTTAAG	1 cut(s)	1262
MspI	CCGG	4 cut(s)	56, 74, 246, 780
MspR9I	CCNGG	5 cut(s)	74, 438, 1710, 1830, 2001
MunI	CAATTG	1 cut(s)	1662
Mva1269I	GAATGC	1 cut(s)	1487
MvaI	CCWGG	4 cut(s)	438, 1710, 1830, 2001
MvnI	CGCG	2 cut(s)	164, 219
MwoI	GCNNNNNNNGC	4 cut(s)	145, 213, 916, 1978
NarI	GGCGCC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	74
NlaIII	CATG	7 cut(s)	229, 235, 1015, 1192, 1319, 1561, 1774
NlaIV	GGNNCC	5 cut(s)	208, 244, 699, 918, 1307
NmeAIII	GCCGAG	2 cut(s)	219, 1106
NmuCI	GTSAC	2 cut(s)	964, 1776
NsiI	ATGCAT	1 cut(s)	605
NspI	RCATGY	2 cut(s)	1192, 1774
NspV	TTCGAA	2 cut(s)	109, 1613
PaqCI	CACCTGC	1 cut(s)	1916
PasI	CCCWGGG	1 cut(s)	1709
PciI	ACATGT	2 cut(s)	1188, 1770
PciSI	GCTCTTC	1 cut(s)	1872
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	1487
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	5 cut(s)	235, 355, 1019, 1085, 1472
PleI	GAGTC	4 cut(s)	62, 128, 977, 1665
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	4 cut(s)	62, 128, 977, 1665
PscI	ACATGT	2 cut(s)	1188, 1770
PshAI	GACNNNNGTC	1 cut(s)	1191
Psp6I	CCWGG	4 cut(s)	436, 1708, 1828, 1999
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	4 cut(s)	436, 1708, 1828, 1999
PspN4I	GGNNCC	5 cut(s)	208, 244, 699, 918, 1307
PspPI	GGNCC	1 cut(s)	1436
PstI	CTGCAG	1 cut(s)	1681
PstNI	CAGNNNCTG	1 cut(s)	1685
PsuI	RGATCY	4 cut(s)	443, 473, 1026, 1348
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	7 cut(s)	391, 682, 760, 806, 1156, 1619, 1699
RsaNI	GTAC	7 cut(s)	390, 681, 759, 805, 1155, 1618, 1698
RseI	CAYNNNNRTG	2 cut(s)	230, 543
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	1872
SaqAI	TTAA	6 cut(s)	567, 606, 899, 1263, 1272, 1964
Sau96I	GGNCC	1 cut(s)	1436
ScaI	AGTACT	2 cut(s)	1619, 1699
SchI	GAGTC	4 cut(s)	62, 129, 977, 1666
ScrFI	CCNGG	5 cut(s)	74, 438, 1710, 1830, 2001
SduI	GDGCHC	2 cut(s)	1290, 1574
SfaNI	GCATC	8 cut(s)	590, 635, 947, 964, 1678, 1804, 1905, 2003
SfcI	CTRYAG	2 cut(s)	1055, 1677
SfoI	GGCGCC	1 cut(s)	208
SfuI	TTCGAA	2 cut(s)	109, 1613
SinI	GGWCC	1 cut(s)	1436
SmiMI	CAYNNNNRTG	2 cut(s)	230, 543
SmlI	CTYRAG	2 cut(s)	329, 1262
SmoI	CTYRAG	2 cut(s)	329, 1262
Sse9I	AATT	6 cut(s)	467, 922, 1237, 1479, 1625, 1662
SsiI	CCGC	9 cut(s)	50, 53, 143, 146, 149, 162, 204, 217, 1406
SspDI	GGCGCC	1 cut(s)	206
SspI	AATATT	2 cut(s)	533, 1738
SspMI	CTAG	5 cut(s)	83, 527, 1359, 1508, 1895
StyD4I	CCNGG	5 cut(s)	72, 436, 1708, 1828, 1999
StyI	CCWWGG	3 cut(s)	153, 297, 791
TaaI	ACNGT	5 cut(s)	394, 763, 804, 1178, 1702
TaiI	ACGT	1 cut(s)	1079
TaqI	TCGA	6 cut(s)	87, 109, 629, 768, 1613, 1957
TasI	AATT	6 cut(s)	467, 922, 1237, 1479, 1625, 1662
TatI	WGTACW	4 cut(s)	758, 1154, 1617, 1697
TauI	GCSGC	6 cut(s)	55, 148, 151, 164, 207, 219
TfiI	GAWTC	5 cut(s)	235, 355, 1019, 1085, 1472
Tru1I	TTAA	6 cut(s)	567, 606, 899, 1263, 1272, 1964
Tru9I	TTAA	6 cut(s)	567, 606, 899, 1263, 1272, 1964
TscAI	CASTG	5 cut(s)	399, 1124, 1183, 1297, 1795
TseFI	GTSAC	2 cut(s)	964, 1776
TseI	GCWGC	4 cut(s)	201, 511, 818, 1386
Tsp45I	GTSAC	2 cut(s)	964, 1776
TspGWI	ACGGA	1 cut(s)	1669
TspRI	CASTG	5 cut(s)	399, 1124, 1183, 1297, 1795
Vha464I	CTTAAG	1 cut(s)	1262
VpaK11BI	GGWCC	1 cut(s)	1436
XapI	RAATTY	2 cut(s)	467, 922
XbaI	TCTAGA	1 cut(s)	1507
XceI	RCATGY	2 cut(s)	1192, 1774
XmiI	GTMKAC	2 cut(s)	87, 222
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	5 cut(s)	83, 527, 1359, 1508, 1895
ZrmI	AGTACT	2 cut(s)	1619, 1699
Zsp2I	ATGCAT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.