Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Forward (+)

28059424 .. 28059624

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCAAGACATATTCGGATCAGTTCGCCGATCACTCGATTTTCGAACACTGCCGGACATCGATGACTCCCCAGTAACCATAGTCAACAACATCAACGCCTTAATTCGAAAATCCAGATTCTTCTCCAAACCCTCCTTGCCGCCGCAGCCGTCAATCCCCAAAGACGCCGCGCGTCTGATTCGATGTGAAAAGACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

66

Amino Acids

7.47

Weight (kDa)

10.01

Isoelectric Point (pI)

63.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	170, 172
AciI	CCGC	3 cut(s)	140, 143, 168
AclWI	GGATC	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	165
AhlI	ACTAGT	1 cut(s)	194
AlwI	GGATC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	172
AsuII	TTCGAA	2 cut(s)	43, 106
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	4 cut(s)	140, 143, 146, 168
BlsI	GCNGC	4 cut(s)	141, 144, 147, 169
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
Bpu14I	TTCGAA	2 cut(s)	43, 106
Bsa29I	ATCGAT	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	170, 172
BshVI	ATCGAT	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	53
Bsp119I	TTCGAA	2 cut(s)	43, 106
Bsp143I	GATC	2 cut(s)	17, 29
BspACI	CCGC	3 cut(s)	140, 143, 168
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	2 cut(s)	170, 172
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	2 cut(s)	43, 106
BsrI	ACTGG	1 cut(s)	71
BssMI	GATC	2 cut(s)	17, 29
BssNI	GRCGYC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	165
BstBI	TTCGAA	2 cut(s)	43, 106
BstFNI	CGCG	2 cut(s)	170, 172
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	20, 32
BstMBI	GATC	2 cut(s)	17, 29
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstUI	CGCG	2 cut(s)	170, 172
BstV1I	GCAGC	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	47
CfoI	GCGC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	2 cut(s)	161, 173
CviJI	RGCY	1 cut(s)	148
CviKI_1	RGCY	1 cut(s)	148
DpnI	GATC	2 cut(s)	19, 31
DpnII	GATC	2 cut(s)	17, 29
FaiI	YATR	2 cut(s)	11, 80
Fnu4HI	GCNGC	4 cut(s)	140, 143, 146, 168
Fsp4HI	GCNGC	4 cut(s)	140, 143, 146, 168
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	140, 143, 146, 168
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	161, 173
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	65, 117, 178
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	17, 177
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	17, 29
LpnPI	CCDG	3 cut(s)	66, 84, 127
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	19, 31
MboI	GATC	2 cut(s)	17, 29
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	101
MspI	CCGG	1 cut(s)	53
MvnI	CGCG	2 cut(s)	170, 172
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	17, 29
NspV	TTCGAA	2 cut(s)	43, 106
PfeI	GAWTC	2 cut(s)	117, 178
PkrI	GCNGC	4 cut(s)	141, 144, 147, 169
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	4 cut(s)	140, 143, 146, 168
Sau3AI	GATC	2 cut(s)	17, 29
SchI	GAGTC	1 cut(s)	59
SfuI	TTCGAA	2 cut(s)	43, 106
SgeI	CNNG	8 cut(s)	17, 47, 65, 83, 126, 148, 181, 183
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	3 cut(s)	140, 143, 168
SspMI	CTAG	1 cut(s)	195
TaqI	TCGA	5 cut(s)	36, 43, 60, 106, 181
TasI	AATT	1 cut(s)	102
TauI	GCSGC	3 cut(s)	142, 145, 170
TfiI	GAWTC	2 cut(s)	117, 178
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	1 cut(s)	145
TspRI	CASTG	1 cut(s)	54
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.