Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

19204787 .. 19210638

Gene Structure 5852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG173900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGCATGGATACTGAATCCGGAGCGCTCATTGCTGCTAAAGAGGCTGACACTAAGGCCCTCCAAGAAGAAATGGAGCTTCTAGAAAACCTGTCTCATCCAAAAATTGTTAGGTATTTGGGGATGGAAATGGAGGATGAAACCGTGACTATGTTGTTGGAATATGTCCCTGGTGGATCCATACAATCACTTCTCGAGAAATTTAGATCTTTCTCCATTCCTGTGATAAAAACATACACTAAGCAGTTGTTGTTGGGACTAGAATATTTACACAAAAAAGGAATCATACACGGGGACATTAAGGTACGCTGCATTACTTTTTCTTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04722 ko04912 ko05166 map04010 map04016 map04722 map04912 map05166

Pfam Domains

Protein Families

Pkinase

Protein Analysis

110

Amino Acids

12.47

Weight (kDa)

5.34

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	13 - 105	9.8e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	14 - 103	4.6e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	20
AclWI	GGATC	2 cut(s)	171, 184
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	306
AfeI	AGCGCT	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	171, 184
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	20
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	35, 309
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	22, 296
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	83, 260
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	4
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	2 cut(s)	36, 310
BlsI	GCNGC	2 cut(s)	37, 311
Bme1390I	CCNGG	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	3 cut(s)	97, 129, 142
BseMI	GCAATG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	22, 296
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	3 cut(s)	152, 270, 308
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	3 cut(s)	152, 270, 308
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	176, 206
BspANI	GGCC	1 cut(s)	59
BspEI	TCCGGA	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	171, 184
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	176, 206
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	54, 240
BstF5I	GGATG	3 cut(s)	97, 129, 142
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	179, 209
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	176, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 44
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	22, 296
BstX2I	RGATCY	2 cut(s)	176, 206
BstYI	RGATCY	2 cut(s)	176, 206
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	97, 129, 142
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	3 cut(s)	47, 59, 79
CviKI_1	RGCY	3 cut(s)	47, 59, 79
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	54, 240
DpnI	GATC	2 cut(s)	178, 208
DpnII	GATC	2 cut(s)	176, 206
Eco47III	AGCGCT	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	10
FaiI	YATR	6 cut(s)	8, 152, 165, 182, 235, 287
FaqI	GGGAC	3 cut(s)	152, 270, 308
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	36, 310
FokI	GGATG	3 cut(s)	84, 136, 149
Fsp4HI	GCNGC	2 cut(s)	36, 310
FspBI	CTAG	2 cut(s)	83, 260
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	36, 310
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	17, 282
HpaII	CCGG	1 cut(s)	21
Hpy188III	TCNNGA	4 cut(s)	21, 83, 194, 196
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 44
HpyF3I	CTNAG	2 cut(s)	54, 240
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	176, 206
LmnI	GCTCC	2 cut(s)	23, 76
LpnPI	CCDG	5 cut(s)	34, 104, 156, 183, 234
Lsp1109I	GCAGC	2 cut(s)	22, 296
MaeI	CTAG	2 cut(s)	83, 260
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	178, 208
MboI	GATC	2 cut(s)	176, 206
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	2 cut(s)	176, 206
MluCI	AATT	2 cut(s)	105, 200
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	37, 71, 127
MroI	TCCGGA	1 cut(s)	20
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	32, 44
NdeII	GATC	2 cut(s)	176, 206
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	17, 282
PkrI	GCNGC	2 cut(s)	37, 311
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	176, 206
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	36, 310
Sau3AI	GATC	2 cut(s)	176, 206
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	4 cut(s)	81, 93, 116, 306
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	105, 200
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	2 cut(s)	83, 260
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	105, 200
TfiI	GAWTC	2 cut(s)	17, 282
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	35, 309
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	153
XapI	RAATTY	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	2 cut(s)	83, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.