Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8476593.1

Orthogroup ID

OG0000922

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1164

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8476593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

atgtcttcaatccccagagacgaagcagcctcgattcaatggcagaagggcgatttgatcggttccggggcctttggccgtgtttacatgggcatgaataccgaatccggagagcttattgctgcaaaagaggctcatacgaaggtgcttcaagatgaagtgaggcttttagaaaacctgtcgcatccgaaaattattagatgtttaggaaccgagagggaggatgaaaccttaactatgctgttggaatatgtacctggaggatccatacaagcactattggagaaatttggatctttctctgttcctgtaataaaaagattcaccaagcagttgttgctggcactagaatatttacacaaaaaaggaatcatacatggggacattaaggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04722 ko04912 ko05166 map04010 map04016 map04722 map04912 map05166

Pfam Domains

Protein Families

Pkinase

Protein Analysis

131

Amino Acids

14.57

Weight (kDa)

6.42

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09000 AT1G09000 AT1G54960 AT1G54960
fragaria_vesca	FvH4_2g08110 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14780 FvH4_3g14790 FvH4_4g12990 FvH4_4g34210 FvH4_6g05800 FvH4_6g05800
malus_domestica	MD04G1205500.v1.1 MD12G1219600.v1.1
prunus_persica	Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1 Prupe.6G326300_v2.0.a1
pyrus_communis	pycom04g18180 pycom12g20510
rosa_chinensis	RchiOBHm_Chr3g0454721 RchiOBHm_Chr5g0024321 RchiOBHm_Chr5g0024331 RchiOBHm_Chr5g0024401 RchiOBHm_Chr5g0025361
rosa_laevigata	RLG00000032792 RLG00000032796
rosa_multiflora	Rmu_co7974142.1_g000001 Rmu_co8231501.1_g000001 Rmu_co8476593.1_g000001 Rmu_sc0005861.1_g000005 Rmu_sc0014903.1_g000002 Rmu_sc0015218.1_g000003
rosa_roxburghii	Rroxscaffold_1G00054820 Rroxscaffold_1G00054830 Rroxscaffold_1G00055870 Rroxscaffold_6G00424830
rosa_rugosa	Rorug03G0001600 Rorug05G0083100
rosa_samantha	Rh3AG061400 Rh3AG061600 Rh3BG063200 Rh3BG063400 Rh3CG062100 Rh3CG062300 Rh3DG063100 Rh5AG173900 Rh5AG174200 Rh5BG171100 Rh5BG171800 Rh5CG187000 Rh5CG187100 Rh5CG187200 Rh5DG173300 Rh5DG245400
rosa_wichuraiana	Rw3G004800 Rw5G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	107
AclWI	GGATC	3 cut(s)	258, 271, 301
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	9, 38, 152
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	258, 271, 301
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	2 cut(s)	69, 76
ApeKI	GCWGC	2 cut(s)	26, 122
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	316
BamHI	GGATCC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	38, 109
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	27, 123
BlsI	GCNGC	2 cut(s)	28, 124
Bme1390I	CCNGG	2 cut(s)	67, 258
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	4 cut(s)	64, 70, 211, 265
BmrFI	CCNGG	2 cut(s)	67, 258
BmsI	GCATC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	184, 229
BseXI	GCAGC	2 cut(s)	38, 109
BshFI	GGCC	2 cut(s)	71, 78
BsiSI	CCGG	2 cut(s)	66, 108
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	71, 78
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	57, 263, 293
BspANI	GGCC	2 cut(s)	71, 78
BspEI	TCCGGA	1 cut(s)	107
BspLI	GGNNCC	4 cut(s)	64, 70, 211, 265
BspPI	GGATC	3 cut(s)	258, 271, 301
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	3 cut(s)	57, 263, 293
Bst2UI	CCWGG	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	184, 229
BstKTI	GATC	3 cut(s)	60, 266, 296
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	57, 263, 293
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 337
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	65, 256
BstV1I	GCAGC	2 cut(s)	38, 109
BstX2I	RGATCY	2 cut(s)	263, 293
BstYI	RGATCY	2 cut(s)	263, 293
BsuRI	GGCC	2 cut(s)	71, 78
BtsCI	GGATG	2 cut(s)	184, 229
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	3 cut(s)	88, 94, 377
CviJI	RGCY	6 cut(s)	29, 71, 78, 115, 134, 166
CviKI_1	RGCY	6 cut(s)	29, 71, 78, 115, 134, 166
CviQI	GTAC	1 cut(s)	254
DpnI	GATC	3 cut(s)	59, 265, 295
DpnII	GATC	3 cut(s)	57, 263, 293
EaeI	YGGCCR	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	91, 97, 380
FaiI	YATR	8 cut(s)	89, 95, 138, 239, 252, 269, 374, 378
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	3 cut(s)	87, 93, 376
Fnu4HI	GCNGC	2 cut(s)	27, 123
FokI	GGATG	2 cut(s)	171, 236
Fsp4HI	GCNGC	2 cut(s)	27, 123
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	27, 123
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	71, 78
HapII	CCGG	2 cut(s)	66, 108
Hin1II	CATG	3 cut(s)	91, 97, 380
HinfI	GANTC	4 cut(s)	34, 104, 321, 369
HpaII	CCGG	2 cut(s)	66, 108
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	108, 152
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	40, 136
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 337
Hsp92II	CATG	3 cut(s)	91, 97, 380
Kpn2I	TCCGGA	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	57, 263, 293
LpnPI	CCDG	8 cut(s)	28, 79, 121, 191, 243, 270, 321, 326
Lsp1109I	GCAGC	2 cut(s)	38, 109
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	347
MalI	GATC	3 cut(s)	59, 265, 295
MboI	GATC	3 cut(s)	57, 263, 293
MflI	RGATCY	2 cut(s)	263, 293
MluCI	AATT	2 cut(s)	192, 287
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	40, 124, 156, 210, 214, 254
MroI	TCCGGA	1 cut(s)	107
MseI	TTAA	2 cut(s)	233, 387
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	2 cut(s)	66, 108
MspR9I	CCNGG	2 cut(s)	67, 258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	131, 337
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	57, 263, 293
NlaIII	CATG	3 cut(s)	91, 97, 380
NlaIV	GGNNCC	4 cut(s)	64, 70, 211, 265
PfeI	GAWTC	4 cut(s)	34, 104, 321, 369
PkrI	GCNGC	2 cut(s)	28, 124
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	4 cut(s)	64, 70, 211, 265
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	263, 293
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	233, 387
SatI	GCNGC	2 cut(s)	27, 123
Sau3AI	GATC	3 cut(s)	57, 263, 293
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	67, 258
SetI	ASST	5 cut(s)	117, 147, 180, 233, 259
SfaNI	GCATC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	192, 287
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	65, 256
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	192, 287
TfiI	GAWTC	4 cut(s)	34, 104, 321, 369
Tru1I	TTAA	2 cut(s)	233, 387
Tru9I	TTAA	2 cut(s)	233, 387
TseI	GCWGC	2 cut(s)	26, 122
TspDTI	ATGAA	3 cut(s)	110, 171, 240
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.