Rh5CG187200

MAP kinase kinase kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000922
Physical Location & Seq
Reverse (-)
18695762 .. 18697608
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG187200.1

Sequence Viewer

Length: 219 bp
ATGTCTTCAATGCCCCGAGACAAAGCAACCTCGATTCAATGGCGGAAGGGCGAATTGATCGGTTCCGGGGCCTTTGGCCGTGTTTACATGGGCATGAATACTGAATCCGGAGAGCTTATTGCTGTAAAAGAGGCAGCCATTTCAAGTGCAAAGCCTACGAGGGGTACACCATACTGGATGGCTCCTGAAGTCATTCGTGGGACTGGTCATGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04016 ko04722 ko04912 ko05166 map04010 map04016 map04722 map04912 map05166
Pfam Domains
Protein Families
Pkinase

Protein Analysis

72

Amino Acids

7.79

Weight (kDa)

9.3

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 9, 38, 144
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 2 cut(s) 69, 76
ApeKI GCWGC 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 15
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 12
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 64, 70, 183
BmrFI CCNGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 179, 208
BseAI TCCGGA 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 179, 208
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 71, 78
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 66, 108
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 2 cut(s) 71, 78
BsoBI CYCGRG 1 cut(s) 15
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 43
BspANI GGCC 2 cut(s) 71, 78
BspEI TCCGGA 1 cut(s) 107
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 64, 70, 183
BsrI ACTGG 2 cut(s) 179, 208
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 57
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 71, 78
BtsCI GGATG 1 cut(s) 183
CciI TCATGA 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 165
CviAII CATG 3 cut(s) 88, 94, 209
CviJI RGCY 6 cut(s) 71, 78, 115, 137, 154, 182
CviKI_1 RGCY 6 cut(s) 71, 78, 115, 137, 154, 182
CviQI GTAC 1 cut(s) 165
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 76
EciI GGCGGA 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 69
FaeI CATG 3 cut(s) 91, 97, 212
FaiI YATR 4 cut(s) 89, 95, 172, 210
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 87, 93, 208
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 71, 78
HapII CCGG 2 cut(s) 66, 108
Hin1II CATG 3 cut(s) 91, 97, 212
HinfI GANTC 2 cut(s) 34, 104
HpaII CCGG 2 cut(s) 66, 108
Hpy166II GTNNAC 2 cut(s) 85, 167
Hpy188III TCNNGA 3 cut(s) 108, 185, 209
Hpy8I GTNNAC 2 cut(s) 85, 167
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 149
Hsp92II CATG 3 cut(s) 91, 97, 212
Kpn2I TCCGGA 1 cut(s) 107
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 79, 121, 160, 189, 198
Lsp1109I GCAGC 1 cut(s) 146
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MluCI AATT 1 cut(s) 53
MnlI CCTC 3 cut(s) 40, 124, 153
MroI TCCGGA 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 2 cut(s) 66, 108
MspR9I CCNGG 1 cut(s) 67
NciI CCSGG 1 cut(s) 67
NdeII GATC 1 cut(s) 57
NlaIII CATG 3 cut(s) 91, 97, 212
NlaIV GGNNCC 3 cut(s) 64, 70, 183
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 34, 104
PkrI GCNGC 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 64, 70, 183
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 67
SetI ASST 2 cut(s) 32, 117
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 53
TfiI GAWTC 2 cut(s) 34, 104
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.